Wall clock time and date at job start Mon Mar 30 2020 02:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47315 * 2 1 4 4 C 1.53000 * 109.46994 * 120.00325 * 2 1 3 5 5 C 1.53007 * 109.47121 * 174.16452 * 4 2 1 6 6 H 1.09006 * 109.46544 * 56.97372 * 5 4 2 7 7 C 1.50697 * 109.46965 * 176.97366 * 5 4 2 8 8 H 1.07995 * 120.00617 * 359.97438 * 7 5 4 9 9 C 1.37880 * 119.99500 * 180.02562 * 7 5 4 10 10 N 1.31516 * 119.99769 * 180.02562 * 9 7 5 11 11 Si 1.86799 * 120.00131 * 359.97438 * 9 7 5 12 12 H 1.48498 * 109.47447 * 270.00085 * 11 9 7 13 13 H 1.48501 * 109.46869 * 30.00602 * 11 9 7 14 14 H 1.48499 * 109.46802 * 149.99981 * 11 9 7 15 15 N 1.46901 * 109.46939 * 296.97809 * 5 4 2 16 16 C 1.46902 * 110.99547 * 299.99334 * 15 5 4 17 17 C 1.52996 * 117.49878 * 223.62313 * 16 15 5 18 18 C 1.53002 * 60.00157 * 252.51430 * 17 16 15 19 19 H 1.09005 * 109.46847 * 297.97721 * 1 2 3 20 20 H 1.08997 * 109.46991 * 57.97293 * 1 2 3 21 21 H 1.08999 * 109.47369 * 177.97955 * 1 2 3 22 22 H 1.09004 * 109.46932 * 240.00185 * 2 1 3 23 23 H 1.09001 * 109.47466 * 179.97438 * 3 2 1 24 24 H 1.09001 * 109.46977 * 300.00655 * 3 2 1 25 25 H 1.09004 * 109.46970 * 60.00208 * 3 2 1 26 26 H 1.08998 * 109.47509 * 54.16461 * 4 2 1 27 27 H 1.09000 * 109.47249 * 294.16256 * 4 2 1 28 28 H 0.96999 * 119.99927 * 180.02562 * 10 9 7 29 29 H 1.00898 * 110.99707 * 176.04676 * 15 5 4 30 30 H 1.09001 * 115.54940 * 9.33988 * 16 15 5 31 31 H 1.09000 * 117.50006 * 0.02562 * 17 16 15 32 32 H 1.08997 * 117.49893 * 145.02704 * 17 16 15 33 33 H 1.08998 * 117.50203 * 252.51132 * 18 17 16 34 34 H 1.08999 * 117.49817 * 107.48804 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5630 -0.8496 1.1781 6 1 4.0063 0.1404 1.0702 7 6 4.0724 -1.4932 2.4418 8 1 3.3795 -1.7816 3.2183 9 6 5.4235 -1.7131 2.6072 10 7 5.8681 -2.2752 3.7099 11 14 6.6223 -1.2137 1.2644 12 1 6.8066 -2.3444 0.3197 13 1 6.0840 -0.0393 0.5321 14 1 7.9293 -0.8601 1.8743 15 7 3.9311 -1.6794 0.0230 16 6 3.3499 -3.0239 0.1343 17 6 4.2478 -4.2127 -0.2140 18 6 3.1189 -3.8031 -1.1620 19 1 -0.3633 0.4821 0.9076 20 1 -0.3633 0.5450 -0.8712 21 1 -0.3634 -1.0270 -0.0362 22 1 1.8933 -0.5138 -0.8900 23 1 3.1301 1.4425 0.0005 24 1 1.6766 1.9563 -0.8899 25 1 1.6767 1.9563 0.8900 26 1 1.5939 -1.7144 1.3030 27 1 1.7645 -0.1508 2.1362 28 1 6.8187 -2.4295 3.8264 29 1 4.9333 -1.7264 -0.0836 30 1 2.6258 -3.1580 0.9380 31 1 5.2699 -3.9972 -0.5253 32 1 4.1147 -5.1293 0.3607 33 1 2.2431 -4.4502 -1.2110 34 1 3.3982 -3.3181 -2.0973 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261134685.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:01 Heat of formation + Delta-G solvation = 12.087820 kcal Electronic energy + Delta-G solvation = -13327.007207 eV Core-core repulsion = 11260.181978 eV Total energy + Delta-G solvation = -2066.825228 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -37.85449 -35.63758 -33.29833 -31.41224 -27.42073 -26.66706 -25.16819 -21.69234 -21.26206 -20.32628 -18.57524 -16.65012 -15.63435 -15.00290 -14.50483 -14.05081 -13.39165 -13.09418 -12.58811 -12.36311 -12.07336 -11.73321 -11.58552 -11.10403 -10.95152 -10.86988 -10.61685 -10.58878 -10.25390 -9.84801 -9.76809 -9.49923 -9.35375 -9.10673 -8.67654 -7.14966 -6.16076 -4.16699 3.16024 3.28750 3.29837 4.29442 4.60543 5.05676 5.31247 5.53965 5.54904 5.59718 5.71028 5.71976 6.03357 6.10091 6.21267 6.22095 6.27931 6.34902 6.43839 6.49925 6.56874 6.66419 6.71212 6.74452 6.80722 7.00678 7.21415 7.36376 7.64092 8.03616 8.33927 8.53452 8.89377 9.46226 10.97501 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.028728 B = 0.015116 C = 0.012156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.420693 B = 1851.873245 C = 2302.918763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 C -0.143 4.143 4 C -0.088 4.088 5 C 0.170 3.830 6 H 0.046 0.954 7 C -0.541 4.541 8 H 0.073 0.927 9 C 0.076 3.924 10 N -0.894 5.894 11 Si 0.863 3.137 12 H -0.274 1.274 13 H -0.259 1.259 14 H -0.292 1.292 15 N -0.659 5.659 16 C 0.068 3.932 17 C -0.213 4.213 18 C -0.193 4.193 19 H 0.047 0.953 20 H 0.043 0.957 21 H 0.048 0.952 22 H 0.079 0.921 23 H 0.058 0.942 24 H 0.040 0.960 25 H 0.046 0.954 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.264 0.736 29 H 0.316 0.684 30 H 0.113 0.887 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.869 1.750 -8.101 10.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 C -0.200 4.200 4 C -0.126 4.126 5 C 0.063 3.937 6 H 0.064 0.936 7 C -0.581 4.581 8 H 0.092 0.908 9 C -0.127 4.127 10 N -0.532 5.532 11 Si 0.692 3.308 12 H -0.201 1.201 13 H -0.184 1.184 14 H -0.219 1.219 15 N -0.293 5.293 16 C -0.044 4.044 17 C -0.252 4.252 18 C -0.231 4.231 19 H 0.066 0.934 20 H 0.062 0.938 21 H 0.067 0.933 22 H 0.098 0.902 23 H 0.077 0.923 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.139 0.861 30 H 0.130 0.870 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.207 1.982 -8.387 10.621 hybrid contribution 1.502 -0.325 0.112 1.540 sum -4.705 1.657 -8.276 9.663 Atomic orbital electron populations 1.21852 0.96923 1.00840 1.00516 1.21103 0.93703 0.95973 1.00610 1.21831 1.01624 0.96467 1.00061 1.21538 0.96325 0.99126 0.95617 1.19712 0.92896 0.93492 0.87601 0.93593 1.21690 0.93174 1.39986 1.03216 0.90847 1.24982 0.98195 0.94285 0.95225 1.69898 1.14548 1.42873 1.25849 0.87166 0.81216 0.79921 0.82470 1.20112 1.18366 1.21858 1.61036 1.13812 1.10245 1.44179 1.22117 1.00060 0.86453 0.95737 1.23240 0.95743 1.01355 1.04843 1.23110 0.99672 1.04518 0.95840 0.93436 0.93780 0.93278 0.90214 0.92316 0.94084 0.93529 0.92794 0.92806 0.92647 0.86129 0.86982 0.89890 0.89545 0.89781 0.89553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.19 37.16 0.34 -1.71 16 2 C -0.10 -1.61 2.85 -90.62 -0.26 -1.87 16 3 C -0.14 -2.28 8.97 37.16 0.33 -1.95 16 4 C -0.09 -1.74 3.91 -26.73 -0.10 -1.85 16 5 C 0.17 3.91 1.83 -68.86 -0.13 3.78 16 6 H 0.05 1.10 5.52 -51.93 -0.29 0.81 16 7 C -0.54 -14.77 8.20 -34.44 -0.28 -15.05 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 9 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 10 N -0.89 -26.96 13.96 55.43 0.77 -26.18 16 11 Si 0.86 21.17 24.61 -169.99 -4.18 16.98 16 12 H -0.27 -6.53 7.01 56.52 0.40 -6.13 16 13 H -0.26 -6.11 6.54 56.52 0.37 -5.74 16 14 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 15 N -0.66 -14.42 5.92 -100.95 -0.60 -15.02 16 16 C 0.07 1.39 4.99 -67.71 -0.34 1.05 16 17 C -0.21 -4.11 10.23 -26.73 -0.27 -4.39 16 18 C -0.19 -3.31 10.46 -26.73 -0.28 -3.59 16 19 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 20 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 21 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.08 1.43 7.53 -51.93 -0.39 1.04 16 23 H 0.06 1.02 6.53 -51.93 -0.34 0.69 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 1.07 6.22 -51.93 -0.32 0.75 16 27 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 29 H 0.32 7.27 3.82 -39.29 -0.15 7.12 16 30 H 0.11 2.41 6.03 -51.93 -0.31 2.09 16 31 H 0.08 1.66 8.09 -51.93 -0.42 1.24 16 32 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 33 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 264.55 15.07 3.99 3.99 Total: -1.00 -28.29 264.55 -6.72 -35.02 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -5.62 Total: 8.73 kcal Atomic # 6 Polarization: -22.43 SS G_CDS: -1.08 Total: -23.52 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: 0.18 Total: -41.20 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.18 Total: 16.98 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -28.29 -6.72 -35.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261134685.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.104 kcal (2) G-P(sol) polarization free energy of solvation -28.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds