Wall clock time and date at job start Mon Mar 30 2020 01:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47368 * 2 1 4 4 C 1.53000 * 109.90416 * 56.84866 * 3 2 1 5 5 C 1.53004 * 109.47069 * 60.14588 * 4 3 2 6 6 N 1.47902 * 109.91916 * 177.95150 * 3 2 1 7 7 C 1.48533 * 105.81729 * 94.02109 * 6 3 2 8 8 C 1.54935 * 103.22616 * 39.20940 * 7 6 3 9 9 C 1.53992 * 109.91479 * 295.54393 * 3 2 1 10 10 H 1.08994 * 110.31246 * 0.78789 * 9 3 2 11 11 C 1.50706 * 110.30910 * 122.95872 * 9 3 2 12 12 H 1.08003 * 119.99426 * 357.16556 * 11 9 3 13 13 C 1.37874 * 120.00040 * 177.17226 * 11 9 3 14 14 N 1.31512 * 119.99877 * 359.97438 * 13 11 9 15 15 Si 1.86801 * 119.99914 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47078 * 89.99586 * 15 13 11 17 17 H 1.48501 * 109.47044 * 209.99721 * 15 13 11 18 18 H 1.48500 * 109.46872 * 329.99361 * 15 13 11 19 19 H 1.08998 * 109.47556 * 174.05969 * 1 2 3 20 20 H 1.09002 * 109.47319 * 294.05607 * 1 2 3 21 21 H 1.09003 * 109.47266 * 54.05503 * 1 2 3 22 22 H 1.09002 * 109.47033 * 239.99700 * 2 1 3 23 23 H 1.09001 * 109.47166 * 120.00268 * 2 1 3 24 24 H 1.09007 * 109.47128 * 180.14316 * 4 3 2 25 25 H 1.08995 * 109.47545 * 300.13995 * 4 3 2 26 26 H 1.09001 * 109.47237 * 54.83061 * 5 4 3 27 27 H 1.09001 * 109.46617 * 174.82837 * 5 4 3 28 28 H 1.09000 * 109.46970 * 294.82466 * 5 4 3 29 29 H 1.00904 * 110.99892 * 333.51190 * 6 3 2 30 30 H 1.08994 * 110.67207 * 280.77215 * 7 6 3 31 31 H 1.08998 * 110.80869 * 157.70957 * 7 6 3 32 32 H 1.08999 * 110.72253 * 80.94165 * 8 7 6 33 33 H 1.09006 * 110.72207 * 204.22187 * 8 7 6 34 34 H 0.97006 * 119.99981 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4720 2.1958 1.2044 5 6 1.9190 1.5057 2.4948 6 7 3.5182 1.4543 0.0497 7 6 3.9701 1.5407 -1.3626 8 6 2.9553 2.5227 -2.0000 9 6 1.6263 2.1451 -1.3063 10 1 1.0508 1.4661 -1.9353 11 6 0.8245 3.3844 -1.0024 12 1 0.5819 3.6333 0.0202 13 6 0.4004 4.2004 -2.0297 14 7 0.6962 3.8974 -3.2748 15 14 -0.5940 5.7361 -1.6529 16 1 0.3257 6.8846 -1.4524 17 1 -1.5070 6.0254 -2.7878 18 1 -1.3914 5.5191 -0.4191 19 1 -0.3634 -1.0221 -0.1064 20 1 -0.3634 0.4189 0.9384 21 1 -0.3634 0.6033 -0.8320 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 1.8376 3.2227 1.1961 25 1 0.3833 2.1974 1.1516 26 1 3.0058 1.4223 2.5045 27 1 1.5921 2.0930 3.3529 28 1 1.4776 0.5104 2.5462 29 1 3.8718 0.6191 0.4920 30 1 3.9155 0.5646 -1.8445 31 1 4.9820 1.9413 -1.4215 32 1 3.2263 3.5550 -1.7786 33 1 2.8877 2.3629 -3.0762 34 1 0.3982 4.4717 -3.9976 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261142040.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:00 Heat of formation + Delta-G solvation = -28.197677 kcal Electronic energy + Delta-G solvation = -13685.456890 eV Core-core repulsion = 11616.884751 eV Total energy + Delta-G solvation = -2068.572139 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.49222 -35.02038 -34.57682 -31.97346 -30.99424 -28.55427 -26.19245 -24.14333 -23.48775 -21.58636 -19.56488 -17.78757 -17.16132 -16.47838 -15.95738 -15.47220 -15.25873 -14.12811 -14.04606 -13.55344 -13.40382 -13.35867 -12.90575 -12.76972 -12.60963 -12.44457 -12.19465 -11.97017 -11.72842 -11.58863 -11.44518 -11.28814 -10.58650 -10.46544 -10.42242 -9.18363 -8.05513 -6.10267 1.40921 1.42491 1.51186 2.47254 3.26949 3.54553 4.09208 4.15503 4.33050 4.42956 4.56325 4.64152 4.68065 4.71566 4.85019 4.92194 5.03301 5.07892 5.14318 5.21078 5.36578 5.40355 5.49581 5.55893 5.60297 5.71331 5.75275 5.87895 5.96126 6.30441 6.48324 6.80600 6.98656 7.56153 9.04393 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.033772 B = 0.014270 C = 0.012579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.884601 B = 1961.721151 C = 2225.450305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.129 4.129 3 C 0.106 3.894 4 C -0.082 4.082 5 C -0.144 4.144 6 N -0.662 5.662 7 C 0.042 3.958 8 C -0.090 4.090 9 C 0.047 3.953 10 H 0.000 1.000 11 C -0.515 4.515 12 H 0.074 0.926 13 C 0.007 3.993 14 N -0.926 5.926 15 Si 0.943 3.057 16 H -0.281 1.281 17 H -0.289 1.289 18 H -0.265 1.265 19 H 0.061 0.939 20 H 0.060 0.940 21 H 0.035 0.965 22 H 0.044 0.956 23 H 0.079 0.921 24 H 0.041 0.959 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.335 0.665 30 H 0.037 0.963 31 H 0.078 0.922 32 H 0.029 0.971 33 H 0.032 0.968 34 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.480 -6.669 7.554 10.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.168 4.168 3 C 0.015 3.985 4 C -0.120 4.120 5 C -0.201 4.201 6 N -0.291 5.291 7 C -0.087 4.087 8 C -0.129 4.129 9 C 0.028 3.972 10 H 0.018 0.982 11 C -0.553 4.553 12 H 0.092 0.908 13 C -0.191 4.191 14 N -0.566 5.566 15 Si 0.770 3.230 16 H -0.207 1.207 17 H -0.215 1.215 18 H -0.189 1.189 19 H 0.080 0.920 20 H 0.079 0.921 21 H 0.054 0.946 22 H 0.063 0.937 23 H 0.097 0.903 24 H 0.060 0.940 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.152 0.848 30 H 0.056 0.944 31 H 0.097 0.903 32 H 0.048 0.952 33 H 0.050 0.950 34 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.550 -5.894 7.568 9.926 hybrid contribution -0.783 0.231 -0.949 1.252 sum 1.767 -5.662 6.619 8.888 Atomic orbital electron populations 1.21699 0.95504 1.00996 1.01798 1.22066 0.97157 0.96498 1.01033 1.21653 0.86815 0.93720 0.96300 1.21360 0.98909 0.98379 0.93346 1.21810 1.01570 1.00237 0.96495 1.63082 1.07490 1.43239 1.15286 1.22992 0.98751 0.97671 0.89305 1.22198 0.96364 0.96932 0.97382 1.19474 0.92472 0.94173 0.91077 0.98188 1.21921 1.32086 1.07756 0.93554 0.90763 1.25738 0.97554 1.00626 0.95159 1.70120 1.48013 1.39169 0.99346 0.85775 0.78842 0.80632 0.77762 1.20743 1.21530 1.18918 0.91959 0.92116 0.94594 0.93749 0.90266 0.93996 0.92857 0.92281 0.93022 0.92296 0.84814 0.94444 0.90345 0.95219 0.94967 0.93651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.74 9.16 71.98 0.66 -4.08 16 2 C -0.13 -4.25 4.37 30.59 0.13 -4.12 16 3 C 0.11 4.13 0.57 3.67 0.00 4.13 16 4 C -0.08 -3.12 3.25 30.60 0.10 -3.02 16 5 C -0.14 -4.18 9.34 71.98 0.67 -3.51 16 6 N -0.66 -23.80 6.27 -459.14 -2.88 -26.68 16 7 C 0.04 1.59 7.54 86.65 0.65 2.24 16 8 C -0.09 -4.39 5.58 31.80 0.18 -4.21 16 9 C 0.05 2.33 1.97 -10.66 -0.02 2.31 16 10 H 0.00 0.00 6.65 -2.39 -0.02 -0.01 16 11 C -0.51 -27.95 7.55 25.60 0.19 -27.75 16 12 H 0.07 3.92 4.72 -2.91 -0.01 3.90 16 13 C 0.01 0.37 5.33 84.65 0.45 0.82 16 14 N -0.93 -54.91 12.42 21.45 0.27 -54.64 16 15 Si 0.94 44.55 29.54 68.60 2.03 46.58 16 16 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 17 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 18 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 19 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 20 H 0.06 1.91 6.76 -2.39 -0.02 1.89 16 21 H 0.03 1.45 6.61 -2.39 -0.02 1.43 16 22 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.08 2.17 6.74 -2.39 -0.02 2.15 16 24 H 0.04 1.82 6.97 -2.38 -0.02 1.80 16 25 H 0.05 2.13 5.68 -2.39 -0.01 2.11 16 26 H 0.06 1.66 7.41 -2.39 -0.02 1.64 16 27 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.06 1.51 6.83 -2.39 -0.02 1.50 16 29 H 0.34 9.94 8.30 -89.69 -0.74 9.20 16 30 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.03 1.58 7.86 -2.39 -0.02 1.56 16 33 H 0.03 1.67 8.04 -2.38 -0.02 1.65 16 34 H 0.25 14.54 8.31 -92.70 -0.77 13.77 16 Total: -1.00 -60.18 255.78 2.76 -57.41 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 0.33 Total: 14.52 kcal Atomic # 6 Polarization: -40.21 SS G_CDS: 3.02 Total: -37.19 kcal Atomic # 7 Polarization: -78.71 SS G_CDS: -2.61 Total: -81.32 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -60.18 2.76 -57.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261142040.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.215 kcal (2) G-P(sol) polarization free energy of solvation -60.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds