Wall clock time and date at job start Mon Mar 30 2020 01:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47525 * 2 1 4 4 C 1.50696 * 109.52118 * 302.73527 * 3 2 1 5 5 H 1.07995 * 119.99757 * 122.57873 * 4 3 2 6 6 C 1.37874 * 120.00185 * 302.57693 * 4 3 2 7 7 N 1.31519 * 119.99862 * 354.11902 * 6 4 3 8 8 Si 1.86800 * 120.00213 * 174.11608 * 6 4 3 9 9 H 1.48500 * 109.47181 * 180.02562 * 8 6 4 10 10 H 1.48497 * 109.46836 * 300.00221 * 8 6 4 11 11 H 1.48494 * 109.46994 * 60.00073 * 8 6 4 12 12 C 1.53120 * 109.52117 * 62.86559 * 3 2 1 13 13 C 1.53173 * 109.20500 * 177.56439 * 12 3 2 14 14 N 1.46851 * 109.55539 * 300.85484 * 13 12 3 15 15 C 1.46901 * 110.99772 * 185.84107 * 14 13 12 16 16 C 1.46853 * 111.19758 * 61.74365 * 14 13 12 17 17 C 1.53032 * 109.52233 * 298.25948 * 16 14 13 18 18 H 1.09001 * 109.47107 * 295.32238 * 1 2 3 19 19 H 1.09007 * 109.46358 * 55.31211 * 1 2 3 20 20 H 1.08998 * 109.47440 * 175.31014 * 1 2 3 21 21 H 1.09000 * 109.47253 * 239.99614 * 2 1 3 22 22 H 1.09008 * 109.46724 * 120.00316 * 2 1 3 23 23 H 0.97003 * 119.99760 * 179.97438 * 7 6 4 24 24 H 1.09005 * 109.49681 * 297.55885 * 12 3 2 25 25 H 1.08991 * 109.50709 * 57.68330 * 12 3 2 26 26 H 1.08995 * 109.44312 * 180.83121 * 13 12 3 27 27 H 1.08999 * 109.44024 * 60.87869 * 13 12 3 28 28 H 1.08997 * 109.47424 * 295.78559 * 15 14 13 29 29 H 1.09000 * 109.47102 * 55.79231 * 15 14 13 30 30 H 1.09003 * 109.46403 * 175.79266 * 15 14 13 31 31 H 1.08993 * 109.45941 * 178.23874 * 16 14 13 32 32 H 1.09000 * 109.45038 * 58.26738 * 16 14 13 33 33 H 1.08996 * 109.50838 * 299.23630 * 17 16 14 34 34 H 1.09009 * 109.50242 * 179.12077 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.4839 2.1733 -1.1948 5 1 0.9036 3.0733 -1.0551 6 6 1.7158 1.6929 -2.4661 7 7 2.5168 0.6652 -2.6448 8 14 0.8922 2.5016 -3.9349 9 1 1.3018 1.8023 -5.1792 10 1 -0.5826 2.4181 -3.7833 11 1 1.3023 3.9268 -4.0096 12 6 1.5901 2.1443 1.2843 13 6 2.1554 3.5677 1.3052 14 7 3.6216 3.5153 1.2413 15 6 4.2035 4.8550 1.3986 16 6 4.0766 2.8870 -0.0056 17 6 3.5699 1.4442 -0.0657 18 1 -0.3633 0.4395 0.9289 19 1 -0.3632 0.5849 -0.8451 20 1 -0.3634 -1.0242 -0.0840 21 1 1.8933 -0.5139 -0.8899 22 1 1.8933 -0.5139 0.8900 23 1 2.6797 0.3270 -3.5393 24 1 0.5012 2.1830 1.3154 25 1 1.9601 1.5934 2.1489 26 1 1.8496 4.0661 2.2251 27 1 1.7740 4.1221 0.4478 28 1 3.9018 5.4829 0.5604 29 1 3.8501 5.2975 2.3299 30 1 5.2906 4.7782 1.4222 31 1 5.1660 2.8910 -0.0377 32 1 3.6860 3.4448 -0.8567 33 1 3.9710 0.8822 0.7777 34 1 3.8947 0.9830 -0.9985 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261146946.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:45 Heat of formation + Delta-G solvation = -11.241036 kcal Electronic energy + Delta-G solvation = -13771.355973 eV Core-core repulsion = 11703.519129 eV Total energy + Delta-G solvation = -2067.836844 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.37799 -34.82015 -31.60027 -29.82383 -29.50616 -25.94750 -24.63189 -22.60538 -21.76040 -19.71903 -18.47879 -15.49292 -14.90267 -14.49815 -14.09899 -13.79614 -13.22763 -12.83182 -12.65261 -12.14409 -11.71950 -11.48282 -11.22841 -10.87903 -10.83802 -10.59729 -10.49411 -10.31939 -10.07429 -9.77126 -9.57169 -8.90263 -8.74837 -8.52156 -8.19553 -7.44598 -5.90895 -3.97119 3.30746 3.36511 3.39511 4.45114 4.83081 5.33964 5.72317 5.90696 5.98404 6.16388 6.25032 6.26470 6.41958 6.49759 6.59344 6.66766 6.72467 6.81107 6.92426 7.03445 7.10721 7.17696 7.31519 7.54345 7.58489 7.71131 7.77976 7.86548 8.01536 8.15379 8.31948 8.57679 9.01560 9.64772 11.09748 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.031443 B = 0.016096 C = 0.013252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.294104 B = 1739.132755 C = 2112.338415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.107 4.107 3 C 0.072 3.928 4 C -0.492 4.492 5 H 0.050 0.950 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.879 3.121 9 H -0.289 1.289 10 H -0.278 1.278 11 H -0.281 1.281 12 C -0.101 4.101 13 C 0.067 3.933 14 N -0.546 5.546 15 C 0.027 3.973 16 C 0.071 3.929 17 C -0.100 4.100 18 H 0.030 0.970 19 H 0.063 0.937 20 H 0.020 0.980 21 H 0.086 0.914 22 H 0.014 0.986 23 H 0.258 0.742 24 H 0.051 0.949 25 H 0.040 0.960 26 H 0.046 0.954 27 H 0.037 0.963 28 H 0.017 0.983 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.043 0.957 32 H 0.041 0.959 33 H 0.022 0.978 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.517 3.121 4.504 5.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.145 4.145 3 C 0.072 3.928 4 C -0.530 4.530 5 H 0.068 0.932 6 C -0.134 4.134 7 N -0.524 5.524 8 Si 0.708 3.292 9 H -0.214 1.214 10 H -0.204 1.204 11 H -0.207 1.207 12 C -0.138 4.138 13 C -0.061 4.061 14 N -0.271 5.271 15 C -0.122 4.122 16 C -0.056 4.056 17 C -0.139 4.139 18 H 0.049 0.951 19 H 0.082 0.918 20 H 0.039 0.961 21 H 0.104 0.896 22 H 0.032 0.968 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.035 0.965 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.041 0.959 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.753 2.714 4.728 5.503 hybrid contribution -0.728 1.038 -1.539 1.994 sum 0.025 3.752 3.189 4.924 Atomic orbital electron populations 1.21657 0.98221 0.98269 1.00771 1.21462 0.94017 0.99027 0.99969 1.18150 0.91624 0.91884 0.91139 1.21003 1.32060 1.09543 0.90423 0.93184 1.24851 0.95062 0.95125 0.98328 1.69786 1.35782 1.25172 1.21644 0.86869 0.80205 0.79455 0.82708 1.21428 1.20423 1.20681 1.21679 0.98522 0.94444 0.99200 1.21993 0.86948 0.98510 0.98656 1.62048 1.08797 1.18431 1.37843 1.22276 0.99547 0.90708 0.99626 1.21992 0.96877 0.97654 0.89077 1.21621 0.98158 0.92961 1.01113 0.95108 0.91831 0.96080 0.89556 0.96764 0.93151 0.93005 0.94078 0.93561 0.94428 0.96456 0.92577 0.92380 0.93828 0.94058 0.95939 0.88600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 9.31 37.16 0.35 -2.49 16 2 C -0.11 -2.50 4.71 -26.73 -0.13 -2.62 16 3 C 0.07 1.71 0.28 -155.54 -0.04 1.66 16 4 C -0.49 -12.58 4.77 -34.44 -0.16 -12.74 16 5 H 0.05 1.31 6.78 -52.49 -0.36 0.96 16 6 C 0.07 1.75 5.13 -17.82 -0.09 1.66 16 7 N -0.88 -23.68 9.41 55.43 0.52 -23.16 16 8 Si 0.88 20.77 29.54 -169.99 -5.02 15.75 16 9 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 12 C -0.10 -2.15 4.50 -26.58 -0.12 -2.27 16 13 C 0.07 1.34 5.25 -3.76 -0.02 1.32 16 14 N -0.55 -10.93 4.91 -242.87 -1.19 -12.12 16 15 C 0.03 0.45 9.59 60.07 0.58 1.03 16 16 C 0.07 1.55 5.26 -3.83 -0.02 1.53 16 17 C -0.10 -2.37 4.72 -26.65 -0.13 -2.49 16 18 H 0.03 0.60 6.81 -51.93 -0.35 0.25 16 19 H 0.06 1.48 6.96 -51.93 -0.36 1.12 16 20 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 21 H 0.09 2.23 6.19 -51.93 -0.32 1.91 16 22 H 0.01 0.31 8.14 -51.92 -0.42 -0.12 16 23 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 24 H 0.05 1.08 6.74 -51.93 -0.35 0.73 16 25 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.05 0.83 8.09 -51.93 -0.42 0.41 16 27 H 0.04 0.82 6.73 -51.93 -0.35 0.47 16 28 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.82 8.09 -51.93 -0.42 0.40 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.04 0.88 8.12 -51.93 -0.42 0.46 16 32 H 0.04 0.99 7.31 -51.93 -0.38 0.61 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.10 2.48 6.03 -51.92 -0.31 2.17 16 LS Contribution 253.71 15.07 3.82 3.82 Total: -1.00 -26.06 253.71 -7.38 -33.44 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -5.72 Total: -2.31 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: 0.21 Total: -15.42 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: -0.67 Total: -35.28 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -26.06 -7.38 -33.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261146946.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.197 kcal (2) G-P(sol) polarization free energy of solvation -26.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds