Wall clock time and date at job start Mon Mar 30 2020 01:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47525 * 2 1 4 4 C 1.50696 * 109.52118 * 302.73527 * 3 2 1 5 5 H 1.07995 * 119.99757 * 122.57873 * 4 3 2 6 6 C 1.37874 * 120.00185 * 302.57693 * 4 3 2 7 7 N 1.31519 * 119.99862 * 354.11902 * 6 4 3 8 8 Si 1.86800 * 120.00213 * 174.11608 * 6 4 3 9 9 H 1.48500 * 109.47181 * 180.02562 * 8 6 4 10 10 H 1.48497 * 109.46836 * 300.00221 * 8 6 4 11 11 H 1.48494 * 109.46994 * 60.00073 * 8 6 4 12 12 C 1.53120 * 109.52117 * 62.86559 * 3 2 1 13 13 C 1.53173 * 109.20500 * 177.56439 * 12 3 2 14 14 N 1.46851 * 109.55539 * 300.85484 * 13 12 3 15 15 C 1.46901 * 110.99772 * 185.84107 * 14 13 12 16 16 C 1.46853 * 111.19758 * 61.74365 * 14 13 12 17 17 C 1.53032 * 109.52233 * 298.25948 * 16 14 13 18 18 H 1.09001 * 109.47107 * 295.32238 * 1 2 3 19 19 H 1.09007 * 109.46358 * 55.31211 * 1 2 3 20 20 H 1.08998 * 109.47440 * 175.31014 * 1 2 3 21 21 H 1.09000 * 109.47253 * 239.99614 * 2 1 3 22 22 H 1.09008 * 109.46724 * 120.00316 * 2 1 3 23 23 H 0.97003 * 119.99760 * 179.97438 * 7 6 4 24 24 H 1.09005 * 109.49681 * 297.55885 * 12 3 2 25 25 H 1.08991 * 109.50709 * 57.68330 * 12 3 2 26 26 H 1.08995 * 109.44312 * 180.83121 * 13 12 3 27 27 H 1.08999 * 109.44024 * 60.87869 * 13 12 3 28 28 H 1.08997 * 109.47424 * 295.78559 * 15 14 13 29 29 H 1.09000 * 109.47102 * 55.79231 * 15 14 13 30 30 H 1.09003 * 109.46403 * 175.79266 * 15 14 13 31 31 H 1.08993 * 109.45941 * 178.23874 * 16 14 13 32 32 H 1.09000 * 109.45038 * 58.26738 * 16 14 13 33 33 H 1.08996 * 109.50838 * 299.23630 * 17 16 14 34 34 H 1.09009 * 109.50242 * 179.12077 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.4839 2.1733 -1.1948 5 1 0.9036 3.0733 -1.0551 6 6 1.7158 1.6929 -2.4661 7 7 2.5168 0.6652 -2.6448 8 14 0.8922 2.5016 -3.9349 9 1 1.3018 1.8023 -5.1792 10 1 -0.5826 2.4181 -3.7833 11 1 1.3023 3.9268 -4.0096 12 6 1.5901 2.1443 1.2843 13 6 2.1554 3.5677 1.3052 14 7 3.6216 3.5153 1.2413 15 6 4.2035 4.8550 1.3986 16 6 4.0766 2.8870 -0.0056 17 6 3.5699 1.4442 -0.0657 18 1 -0.3633 0.4395 0.9289 19 1 -0.3632 0.5849 -0.8451 20 1 -0.3634 -1.0242 -0.0840 21 1 1.8933 -0.5139 -0.8899 22 1 1.8933 -0.5139 0.8900 23 1 2.6797 0.3270 -3.5393 24 1 0.5012 2.1830 1.3154 25 1 1.9601 1.5934 2.1489 26 1 1.8496 4.0661 2.2251 27 1 1.7740 4.1221 0.4478 28 1 3.9018 5.4829 0.5604 29 1 3.8501 5.2975 2.3299 30 1 5.2906 4.7782 1.4222 31 1 5.1660 2.8910 -0.0377 32 1 3.6860 3.4448 -0.8567 33 1 3.9710 0.8822 0.7777 34 1 3.8947 0.9830 -0.9985 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261146946.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:45 Heat of formation + Delta-G solvation = -26.196730 kcal Electronic energy + Delta-G solvation = -13772.004500 eV Core-core repulsion = 11703.519129 eV Total energy + Delta-G solvation = -2068.485371 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.10584 -36.53635 -33.54831 -31.55341 -31.20615 -27.69162 -26.43914 -24.27879 -23.46210 -21.47286 -20.36382 -17.38081 -16.78706 -16.23462 -15.69871 -15.41836 -15.05787 -14.52394 -14.40848 -13.89210 -13.43013 -12.98638 -12.92540 -12.76437 -12.57891 -12.45624 -12.18871 -12.08941 -11.86313 -11.62573 -11.41466 -10.74357 -10.60943 -10.36355 -10.14596 -9.06319 -7.90652 -6.00771 1.40390 1.43892 1.48020 2.48859 3.28145 3.32118 4.30124 4.35395 4.44379 4.55572 4.69113 4.70229 4.78902 4.85832 4.93947 5.00685 5.01913 5.07174 5.20122 5.27212 5.37881 5.41097 5.48678 5.70367 5.72483 5.80406 5.90400 6.07179 6.26975 6.46056 6.48390 6.59416 7.03841 7.62255 9.07644 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.031443 B = 0.016096 C = 0.013252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.294104 B = 1739.132755 C = 2112.338415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.106 4.106 3 C 0.064 3.936 4 C -0.490 4.490 5 H 0.040 0.960 6 C 0.030 3.970 7 N -0.902 5.902 8 Si 0.924 3.076 9 H -0.290 1.290 10 H -0.276 1.276 11 H -0.282 1.282 12 C -0.097 4.097 13 C 0.069 3.931 14 N -0.551 5.551 15 C 0.026 3.974 16 C 0.080 3.920 17 C -0.097 4.097 18 H 0.048 0.952 19 H 0.041 0.959 20 H 0.036 0.964 21 H 0.057 0.943 22 H 0.023 0.977 23 H 0.254 0.746 24 H 0.055 0.945 25 H 0.047 0.953 26 H 0.075 0.925 27 H 0.018 0.982 28 H 0.013 0.987 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.014 0.986 33 H 0.024 0.976 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.298 3.924 5.737 6.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.144 4.144 3 C 0.064 3.936 4 C -0.529 4.529 5 H 0.058 0.942 6 C -0.169 4.169 7 N -0.542 5.542 8 Si 0.752 3.248 9 H -0.216 1.216 10 H -0.202 1.202 11 H -0.208 1.208 12 C -0.135 4.135 13 C -0.059 4.059 14 N -0.276 5.276 15 C -0.122 4.122 16 C -0.048 4.048 17 C -0.136 4.136 18 H 0.067 0.933 19 H 0.060 0.940 20 H 0.055 0.945 21 H 0.076 0.924 22 H 0.042 0.958 23 H 0.064 0.936 24 H 0.074 0.926 25 H 0.065 0.935 26 H 0.093 0.907 27 H 0.036 0.964 28 H 0.032 0.968 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.032 0.968 33 H 0.043 0.957 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.530 3.528 5.969 6.954 hybrid contribution -0.638 0.793 -1.888 2.145 sum -0.108 4.321 4.080 5.944 Atomic orbital electron populations 1.21551 0.96792 0.99103 1.00681 1.21402 0.95309 0.98727 0.98973 1.18219 0.91552 0.92086 0.91735 1.21119 1.31412 1.09053 0.91274 0.94192 1.25342 0.95677 0.95715 1.00176 1.69919 1.36639 1.26061 1.21581 0.86150 0.79480 0.78548 0.80586 1.21560 1.20203 1.20796 1.21608 0.98832 0.95110 0.97919 1.21973 0.87066 0.97602 0.99222 1.62049 1.08743 1.20607 1.36163 1.22382 1.00409 0.88735 1.00646 1.21799 0.97495 0.96295 0.89163 1.21506 0.98356 0.94068 0.99631 0.93325 0.94024 0.94456 0.92410 0.95812 0.93582 0.92623 0.93451 0.90655 0.96399 0.96799 0.90173 0.90880 0.92469 0.96809 0.95748 0.91397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.18 9.31 71.98 0.67 -4.51 16 2 C -0.11 -4.90 4.71 30.59 0.14 -4.76 16 3 C 0.06 3.01 0.28 -52.85 -0.01 2.99 16 4 C -0.49 -25.07 4.77 25.60 0.12 -24.94 16 5 H 0.04 2.09 6.78 -2.91 -0.02 2.07 16 6 C 0.03 1.55 5.13 84.65 0.43 1.98 16 7 N -0.90 -49.09 9.41 21.45 0.20 -48.88 16 8 Si 0.92 42.81 29.54 68.60 2.03 44.84 16 9 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 C -0.10 -3.95 4.50 30.69 0.14 -3.82 16 13 C 0.07 2.63 5.25 86.37 0.45 3.09 16 14 N -0.55 -20.79 4.91 -922.31 -4.53 -25.32 16 15 C 0.03 0.79 9.59 127.69 1.22 2.02 16 16 C 0.08 3.43 5.26 86.32 0.45 3.88 16 17 C -0.10 -4.57 4.72 30.65 0.14 -4.43 16 18 H 0.05 1.82 6.81 -2.39 -0.02 1.81 16 19 H 0.04 1.90 6.96 -2.38 -0.02 1.88 16 20 H 0.04 1.39 8.14 -2.39 -0.02 1.38 16 21 H 0.06 3.01 6.19 -2.39 -0.01 2.99 16 22 H 0.02 1.02 8.14 -2.38 -0.02 1.00 16 23 H 0.25 13.56 8.31 -92.71 -0.77 12.79 16 24 H 0.06 2.20 6.74 -2.38 -0.02 2.18 16 25 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.08 2.44 8.09 -2.39 -0.02 2.42 16 27 H 0.02 0.75 6.73 -2.39 -0.02 0.73 16 28 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.08 2.03 8.09 -2.39 -0.02 2.01 16 30 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.06 2.25 8.12 -2.39 -0.02 2.23 16 32 H 0.01 0.66 7.31 -2.39 -0.02 0.64 16 33 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.07 3.58 6.03 -2.38 -0.01 3.56 16 Total: -1.00 -54.34 253.71 2.51 -51.83 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: 1.04 Total: 6.03 kcal Atomic # 6 Polarization: -32.26 SS G_CDS: 3.77 Total: -28.49 kcal Atomic # 7 Polarization: -69.87 SS G_CDS: -4.33 Total: -74.20 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -54.34 2.51 -51.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261146946.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.630 kcal (2) G-P(sol) polarization free energy of solvation -54.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds