Wall clock time and date at job start Mon Mar 30 2020 02:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47398 * 2 1 4 4 C 1.52990 * 109.47124 * 174.51651 * 3 2 1 5 5 H 1.09003 * 109.91063 * 305.86379 * 4 3 2 6 6 C 1.54003 * 109.92009 * 184.76277 * 4 3 2 7 7 H 1.08997 * 110.30953 * 120.30631 * 6 4 3 8 8 C 1.50699 * 110.38692 * 358.18417 * 6 4 3 9 9 H 1.08001 * 120.00310 * 2.77970 * 8 6 4 10 10 C 1.37879 * 119.99988 * 182.77943 * 8 6 4 11 11 N 1.31516 * 119.99821 * 359.97438 * 10 8 6 12 12 Si 1.86797 * 120.00253 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47074 * 59.99783 * 12 10 8 14 14 H 1.48501 * 109.47078 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47105 * 299.99904 * 12 10 8 16 16 C 1.54594 * 105.13966 * 239.22608 * 6 4 3 17 17 C 1.54936 * 102.92482 * 338.03881 * 16 6 4 18 18 N 1.47904 * 110.08481 * 67.07390 * 4 3 2 19 19 C 1.46899 * 111.00368 * 265.29044 * 18 4 3 20 20 H 1.08997 * 109.46899 * 60.00100 * 1 2 3 21 21 H 1.09004 * 109.47690 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46776 * 300.00164 * 1 2 3 23 23 H 1.09006 * 109.46741 * 239.99367 * 2 1 3 24 24 H 1.09002 * 109.46877 * 120.00389 * 2 1 3 25 25 H 1.08994 * 109.47159 * 54.51070 * 3 2 1 26 26 H 1.09000 * 109.46817 * 294.51681 * 3 2 1 27 27 H 0.96997 * 120.00202 * 180.02562 * 11 10 8 28 28 H 1.08996 * 110.72212 * 96.40308 * 16 6 4 29 29 H 1.09004 * 110.71860 * 219.68306 * 16 6 4 30 30 H 1.09000 * 110.66582 * 155.84739 * 17 16 6 31 31 H 1.08999 * 110.66929 * 278.98396 * 17 16 6 32 32 H 1.09000 * 109.46896 * 65.68297 * 19 18 4 33 33 H 1.08992 * 109.47081 * 185.68835 * 19 18 4 34 34 H 1.09000 * 109.46989 * 305.68577 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5638 1.4445 0.1378 5 1 3.8577 0.8714 1.0172 6 6 4.0776 2.8913 0.2588 7 1 4.6086 3.0266 1.2011 8 6 2.9319 3.8653 0.1604 9 1 1.9194 3.5007 0.0692 10 6 3.1763 5.2220 0.1869 11 7 4.4092 5.6660 0.2985 12 14 1.7561 6.4294 0.0657 13 1 0.8225 6.2108 1.1995 14 1 2.2809 7.8176 0.1176 15 1 1.0360 6.2195 -1.2160 16 6 5.0441 3.0774 -0.9333 17 6 5.4429 1.6226 -1.2866 18 7 4.1841 0.8637 -1.0727 19 6 4.4572 -0.5680 -0.8890 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8933 -0.5140 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 1.5988 1.9838 0.8367 26 1 1.7591 1.9271 -0.9350 27 1 4.5811 6.6204 0.3175 28 1 4.5351 3.5524 -1.7719 29 1 5.9187 3.6552 -0.6341 30 1 5.7621 1.5529 -2.3265 31 1 6.2259 1.2651 -0.6180 32 1 3.5154 -1.1076 -0.7891 33 1 5.0035 -0.9473 -1.7525 34 1 5.0553 -0.7112 0.0109 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261150879.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:11 Heat of formation + Delta-G solvation = -6.776979 kcal Electronic energy + Delta-G solvation = -13331.103484 eV Core-core repulsion = 11263.460217 eV Total energy + Delta-G solvation = -2067.643268 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.47563 -33.91417 -33.15584 -30.55216 -29.12053 -25.85697 -24.28872 -23.61953 -20.97160 -19.75086 -18.88465 -15.91225 -15.21102 -14.68292 -14.44994 -14.23618 -13.21052 -12.90965 -12.68270 -12.20929 -12.02374 -11.65424 -11.58621 -11.04160 -11.00295 -10.77546 -10.57404 -10.31898 -10.20859 -9.79989 -9.66380 -9.47779 -9.04260 -8.52891 -8.33446 -7.63240 -5.94568 -3.95313 3.36351 3.40833 3.43577 4.49738 4.83536 5.38603 5.50242 5.56607 5.66486 5.76473 5.84349 5.93961 6.13272 6.17059 6.21126 6.31508 6.34051 6.42168 6.47504 6.55435 6.71143 6.89542 7.00875 7.20274 7.28417 7.36393 7.56459 7.70891 7.93453 7.99221 8.11722 8.51479 9.05175 9.68267 11.15840 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.030565 B = 0.013750 C = 0.009964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.854932 B = 2035.831401 C = 2809.340622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.131 4.131 3 C -0.085 4.085 4 C 0.073 3.927 5 H 0.026 0.974 6 C 0.044 3.956 7 H 0.025 0.975 8 C -0.513 4.513 9 H 0.073 0.927 10 C 0.060 3.940 11 N -0.893 5.893 12 Si 0.887 3.113 13 H -0.278 1.278 14 H -0.290 1.290 15 H -0.277 1.277 16 C -0.089 4.089 17 C 0.027 3.973 18 N -0.515 5.515 19 C 0.012 3.988 20 H 0.052 0.948 21 H 0.042 0.958 22 H 0.050 0.950 23 H 0.062 0.938 24 H 0.045 0.955 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.258 0.742 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.027 0.973 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.013 -8.852 -1.204 9.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.169 4.169 3 C -0.123 4.123 4 C -0.035 4.035 5 H 0.044 0.956 6 C 0.025 3.975 7 H 0.044 0.956 8 C -0.551 4.551 9 H 0.091 0.909 10 C -0.141 4.141 11 N -0.532 5.532 12 Si 0.716 3.284 13 H -0.204 1.204 14 H -0.215 1.215 15 H -0.203 1.203 16 C -0.128 4.128 17 C -0.101 4.101 18 N -0.240 5.240 19 C -0.137 4.137 20 H 0.071 0.929 21 H 0.061 0.939 22 H 0.069 0.931 23 H 0.080 0.920 24 H 0.064 0.936 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.045 0.955 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -2.258 -8.647 -1.637 9.085 hybrid contribution -0.043 0.582 0.647 0.871 sum -2.301 -8.065 -0.990 8.445 Atomic orbital electron populations 1.21767 0.96964 1.00257 1.01635 1.21807 0.94856 0.99480 1.00745 1.21577 0.94488 0.93407 1.02816 1.22514 0.94922 0.97437 0.88594 0.95637 1.19506 0.94718 0.88998 0.94327 0.95647 1.21484 0.93602 0.90343 1.49688 0.90914 1.25007 0.95276 0.98470 0.95337 1.69975 1.18731 1.13850 1.50648 0.86732 0.82819 0.80275 0.78612 1.20389 1.21535 1.20275 1.22370 0.99334 0.91130 0.99947 1.23349 0.90539 0.97081 0.99115 1.64629 1.21555 1.01154 1.36630 1.22628 1.00543 0.91464 0.99031 0.92923 0.93920 0.93108 0.91984 0.93581 0.91277 0.90977 0.93215 0.92011 0.92382 0.91967 0.95513 0.91406 0.92647 0.96535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.91 37.16 0.37 -1.76 16 2 C -0.13 -2.13 4.88 -26.73 -0.13 -2.26 16 3 C -0.09 -1.69 3.38 -26.74 -0.09 -1.78 16 4 C 0.07 1.56 2.59 -66.64 -0.17 1.38 16 5 H 0.03 0.54 7.64 -51.93 -0.40 0.14 16 6 C 0.04 1.09 2.92 -90.41 -0.26 0.83 16 7 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 8 C -0.51 -13.80 7.55 -34.44 -0.26 -14.06 16 9 H 0.07 1.89 4.71 -52.49 -0.25 1.65 16 10 C 0.06 1.66 5.33 -17.82 -0.09 1.57 16 11 N -0.89 -25.72 12.42 55.43 0.69 -25.03 16 12 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 C -0.09 -2.13 5.58 -24.87 -0.14 -2.27 16 17 C 0.03 0.54 6.56 -1.89 -0.01 0.53 16 18 N -0.52 -10.19 5.07 -230.78 -1.17 -11.36 16 19 C 0.01 0.20 9.08 60.06 0.55 0.75 16 20 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 21 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 22 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.06 1.00 6.08 -51.93 -0.32 0.68 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.07 1.44 6.84 -51.93 -0.36 1.09 16 26 H 0.07 1.56 7.38 -51.93 -0.38 1.18 16 27 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.06 1.59 7.86 -51.93 -0.41 1.18 16 29 H 0.06 1.45 8.04 -51.93 -0.42 1.03 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.03 0.51 8.02 -51.93 -0.42 0.10 16 32 H 0.07 1.02 5.36 -51.93 -0.28 0.74 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.02 0.26 7.94 -51.93 -0.41 -0.15 16 LS Contribution 261.29 15.07 3.94 3.94 Total: -1.00 -27.81 261.29 -7.54 -35.35 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -5.72 Total: -2.16 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: -0.25 Total: -17.08 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: -0.48 Total: -36.39 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -27.81 -7.54 -35.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261150879.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.570 kcal (2) G-P(sol) polarization free energy of solvation -27.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds