Wall clock time and date at job start Mon Mar 30 2020 02:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47398 * 2 1 4 4 C 1.52990 * 109.47124 * 174.51651 * 3 2 1 5 5 H 1.09003 * 109.91063 * 305.86379 * 4 3 2 6 6 C 1.54003 * 109.92009 * 184.76277 * 4 3 2 7 7 H 1.08997 * 110.30953 * 120.30631 * 6 4 3 8 8 C 1.50699 * 110.38692 * 358.18417 * 6 4 3 9 9 H 1.08001 * 120.00310 * 2.77970 * 8 6 4 10 10 C 1.37879 * 119.99988 * 182.77943 * 8 6 4 11 11 N 1.31516 * 119.99821 * 359.97438 * 10 8 6 12 12 Si 1.86797 * 120.00253 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47074 * 59.99783 * 12 10 8 14 14 H 1.48501 * 109.47078 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47105 * 299.99904 * 12 10 8 16 16 C 1.54594 * 105.13966 * 239.22608 * 6 4 3 17 17 C 1.54936 * 102.92482 * 338.03881 * 16 6 4 18 18 N 1.47904 * 110.08481 * 67.07390 * 4 3 2 19 19 C 1.46899 * 111.00368 * 265.29044 * 18 4 3 20 20 H 1.08997 * 109.46899 * 60.00100 * 1 2 3 21 21 H 1.09004 * 109.47690 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46776 * 300.00164 * 1 2 3 23 23 H 1.09006 * 109.46741 * 239.99367 * 2 1 3 24 24 H 1.09002 * 109.46877 * 120.00389 * 2 1 3 25 25 H 1.08994 * 109.47159 * 54.51070 * 3 2 1 26 26 H 1.09000 * 109.46817 * 294.51681 * 3 2 1 27 27 H 0.96997 * 120.00202 * 180.02562 * 11 10 8 28 28 H 1.08996 * 110.72212 * 96.40308 * 16 6 4 29 29 H 1.09004 * 110.71860 * 219.68306 * 16 6 4 30 30 H 1.09000 * 110.66582 * 155.84739 * 17 16 6 31 31 H 1.08999 * 110.66929 * 278.98396 * 17 16 6 32 32 H 1.09000 * 109.46896 * 65.68297 * 19 18 4 33 33 H 1.08992 * 109.47081 * 185.68835 * 19 18 4 34 34 H 1.09000 * 109.46989 * 305.68577 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5638 1.4445 0.1378 5 1 3.8577 0.8714 1.0172 6 6 4.0776 2.8913 0.2588 7 1 4.6086 3.0266 1.2011 8 6 2.9319 3.8653 0.1604 9 1 1.9194 3.5007 0.0692 10 6 3.1763 5.2220 0.1869 11 7 4.4092 5.6660 0.2985 12 14 1.7561 6.4294 0.0657 13 1 0.8225 6.2108 1.1995 14 1 2.2809 7.8176 0.1176 15 1 1.0360 6.2195 -1.2160 16 6 5.0441 3.0774 -0.9333 17 6 5.4429 1.6226 -1.2866 18 7 4.1841 0.8637 -1.0727 19 6 4.4572 -0.5680 -0.8890 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8933 -0.5140 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 1.5988 1.9838 0.8367 26 1 1.7591 1.9271 -0.9350 27 1 4.5811 6.6204 0.3175 28 1 4.5351 3.5524 -1.7719 29 1 5.9187 3.6552 -0.6341 30 1 5.7621 1.5529 -2.3265 31 1 6.2259 1.2651 -0.6180 32 1 3.5154 -1.1076 -0.7891 33 1 5.0035 -0.9473 -1.7525 34 1 5.0553 -0.7112 0.0109 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261150879.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:10 Heat of formation + Delta-G solvation = -23.736048 kcal Electronic energy + Delta-G solvation = -13331.838885 eV Core-core repulsion = 11263.460217 eV Total energy + Delta-G solvation = -2068.378668 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.16129 -35.33169 -35.11176 -32.39826 -30.68096 -27.62609 -25.77871 -25.44305 -22.42221 -21.46961 -20.70429 -17.89204 -16.89717 -16.47787 -16.05808 -15.87977 -14.63587 -14.49431 -14.29392 -13.77098 -13.50758 -13.37700 -13.17056 -12.82553 -12.57985 -12.43809 -12.32442 -11.99757 -11.72392 -11.61125 -11.37476 -11.11324 -10.81825 -10.53132 -10.44138 -9.19427 -8.07055 -6.13358 1.43238 1.44583 1.51354 2.47089 3.24563 3.28579 4.06465 4.19920 4.29373 4.32923 4.43954 4.53235 4.56492 4.71254 4.74280 4.90712 4.97367 4.98752 5.05266 5.16807 5.22135 5.27839 5.40419 5.45600 5.57360 5.64252 5.71462 5.79400 5.90959 6.24238 6.38200 6.47688 6.94704 7.53377 9.03029 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.030565 B = 0.013750 C = 0.009964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.854932 B = 2035.831401 C = 2809.340622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.122 4.122 3 C -0.078 4.078 4 C 0.080 3.920 5 H 0.029 0.971 6 C 0.032 3.968 7 H -0.009 1.009 8 C -0.522 4.522 9 H 0.079 0.921 10 C 0.008 3.992 11 N -0.925 5.925 12 Si 0.949 3.051 13 H -0.270 1.270 14 H -0.290 1.290 15 H -0.271 1.271 16 C -0.083 4.083 17 C 0.038 3.962 18 N -0.523 5.523 19 C 0.012 3.988 20 H 0.048 0.952 21 H 0.067 0.933 22 H 0.048 0.952 23 H 0.068 0.932 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.256 0.744 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.083 0.917 31 H 0.038 0.962 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.035 -10.602 -1.683 11.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.159 4.159 3 C -0.116 4.116 4 C -0.029 4.029 5 H 0.047 0.953 6 C 0.013 3.987 7 H 0.009 0.991 8 C -0.560 4.560 9 H 0.097 0.903 10 C -0.190 4.190 11 N -0.566 5.566 12 Si 0.775 3.225 13 H -0.195 1.195 14 H -0.215 1.215 15 H -0.197 1.197 16 C -0.121 4.121 17 C -0.090 4.090 18 N -0.248 5.248 19 C -0.137 4.137 20 H 0.068 0.932 21 H 0.086 0.914 22 H 0.068 0.932 23 H 0.087 0.913 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.101 0.899 31 H 0.056 0.944 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -3.289 -10.417 -2.117 11.127 hybrid contribution 0.313 1.104 0.813 1.406 sum -2.976 -9.313 -1.304 9.864 Atomic orbital electron populations 1.21745 0.95370 1.01854 1.01452 1.21697 0.96235 0.96515 1.01493 1.21418 0.93434 0.95913 1.00849 1.22360 0.95941 0.94911 0.89644 0.95257 1.19527 0.94456 0.91678 0.93064 0.99126 1.21883 0.94464 0.90983 1.48717 0.90344 1.25784 0.97547 1.00338 0.95339 1.70115 1.20595 1.13918 1.51940 0.85748 0.79970 0.77908 0.78883 1.19516 1.21538 1.19665 1.22131 0.97934 0.93629 0.98452 1.23247 0.91063 0.94122 1.00567 1.64623 1.21280 1.03241 1.35635 1.22726 1.01826 0.88856 1.00249 0.93247 0.91421 0.93249 0.91324 0.92588 0.92907 0.93169 0.93469 0.94554 0.94559 0.89873 0.94395 0.89928 0.90510 0.96096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 9.91 71.98 0.71 -3.07 16 2 C -0.12 -3.63 4.88 30.59 0.15 -3.48 16 3 C -0.08 -3.04 3.38 30.59 0.10 -2.94 16 4 C 0.08 3.34 2.59 45.06 0.12 3.46 16 5 H 0.03 1.20 7.64 -2.39 -0.02 1.18 16 6 C 0.03 1.63 2.92 -10.66 -0.03 1.60 16 7 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 8 C -0.52 -28.70 7.55 25.60 0.19 -28.50 16 9 H 0.08 4.13 4.71 -2.91 -0.01 4.12 16 10 C 0.01 0.43 5.33 84.65 0.45 0.88 16 11 N -0.93 -54.92 12.42 21.45 0.27 -54.65 16 12 Si 0.95 44.33 29.54 68.60 2.03 46.36 16 13 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 14 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 15 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 16 C -0.08 -4.05 5.58 31.80 0.18 -3.87 16 17 C 0.04 1.46 6.56 86.65 0.57 2.03 16 18 N -0.52 -19.68 5.07 -884.06 -4.48 -24.16 16 19 C 0.01 0.34 9.08 127.69 1.16 1.50 16 20 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 21 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 22 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.07 1.97 6.08 -2.38 -0.01 1.96 16 24 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.05 2.19 6.84 -2.39 -0.02 2.18 16 26 H 0.05 2.15 7.38 -2.39 -0.02 2.14 16 27 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 28 H 0.04 1.91 7.86 -2.39 -0.02 1.90 16 29 H 0.04 1.88 8.04 -2.39 -0.02 1.86 16 30 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 31 H 0.04 1.39 8.02 -2.39 -0.02 1.37 16 32 H 0.08 2.15 5.36 -2.39 -0.01 2.14 16 33 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.02 0.59 7.94 -2.39 -0.02 0.57 16 Total: -1.00 -60.23 261.29 2.46 -57.77 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: 1.04 Total: 7.08 kcal Atomic # 6 Polarization: -36.00 SS G_CDS: 3.60 Total: -32.40 kcal Atomic # 7 Polarization: -74.60 SS G_CDS: -4.21 Total: -78.81 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -60.23 2.46 -57.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261150879.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.032 kcal (2) G-P(sol) polarization free energy of solvation -60.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds