Wall clock time and date at job start Mon Mar 30 2020 02:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47222 * 2 1 4 4 C 1.52994 * 109.47540 * 174.92466 * 3 2 1 5 5 H 1.08999 * 110.46015 * 307.97294 * 4 3 2 6 6 C 1.54385 * 110.41065 * 70.37980 * 4 3 2 7 7 H 1.09000 * 110.41041 * 23.69148 * 6 4 3 8 8 C 1.50702 * 110.32387 * 261.53108 * 6 4 3 9 9 H 1.07998 * 119.99831 * 2.90380 * 8 6 4 10 10 C 1.37878 * 119.99938 * 182.91185 * 8 6 4 11 11 N 1.31516 * 119.99943 * 359.97438 * 10 8 6 12 12 Si 1.86803 * 119.99828 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47168 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.46939 * 120.00089 * 12 10 8 15 15 H 1.48503 * 109.46829 * 239.99626 * 12 10 8 16 16 C 1.54255 * 105.05738 * 142.63165 * 6 4 3 17 17 C 1.54375 * 105.06550 * 0.02562 * 16 6 4 18 18 N 1.48557 * 110.41191 * 185.55182 * 4 3 2 19 19 C 1.46899 * 110.99699 * 82.18230 * 18 4 3 20 20 H 1.09000 * 109.47374 * 60.00652 * 1 2 3 21 21 H 1.09007 * 109.46862 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47240 * 300.00217 * 1 2 3 23 23 H 1.08999 * 109.47627 * 239.99406 * 2 1 3 24 24 H 1.09005 * 109.47014 * 119.99030 * 2 1 3 25 25 H 1.09003 * 109.46627 * 54.92198 * 3 2 1 26 26 H 1.08999 * 109.46552 * 294.92730 * 3 2 1 27 27 H 0.96995 * 119.99684 * 180.02562 * 11 10 8 28 28 H 1.08996 * 110.32555 * 241.10238 * 16 6 4 29 29 H 1.09004 * 110.32456 * 118.89864 * 16 6 4 30 30 H 1.09003 * 110.41277 * 217.37179 * 17 16 6 31 31 H 1.09001 * 110.41694 * 94.92256 * 17 16 6 32 32 H 1.09002 * 109.47263 * 172.98346 * 19 18 4 33 33 H 1.09006 * 109.47330 * 52.98859 * 19 18 4 34 34 H 1.08993 * 109.47673 * 292.98524 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5646 1.4445 0.1276 5 1 3.8764 0.8407 0.9798 6 6 4.2143 0.9194 -1.1707 7 1 3.5380 1.0528 -2.0151 8 6 4.5825 -0.5343 -1.0209 9 1 4.3372 -1.0625 -0.1115 10 6 5.2328 -1.1897 -2.0449 11 7 5.5313 -0.5465 -3.1525 12 14 5.6899 -2.9914 -1.8589 13 1 5.2469 -3.4797 -0.5283 14 1 5.0243 -3.7835 -2.9242 15 1 7.1625 -3.1431 -1.9762 16 6 5.4826 1.7768 -1.3594 17 6 5.4930 2.7474 -0.1590 18 7 4.0713 2.8343 0.2641 19 6 3.9633 3.2999 1.6532 20 1 -0.3634 0.5137 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5137 0.8901 25 1 1.6043 1.9819 0.8411 26 1 1.7527 1.9294 -0.9320 27 1 5.9884 -1.0078 -3.8730 28 1 5.4282 2.3324 -2.2955 29 1 6.3716 1.1463 -1.3437 30 1 5.8585 3.7275 -0.4657 31 1 6.1067 2.3473 0.6481 32 1 4.4530 4.2688 1.7508 33 1 4.4450 2.5810 2.3159 34 1 2.9117 3.3955 1.9236 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261150882.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:20 Heat of formation + Delta-G solvation = -19.038873 kcal Electronic energy + Delta-G solvation = -13277.655631 eV Core-core repulsion = 11209.480648 eV Total energy + Delta-G solvation = -2068.174983 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.34167 -34.02425 -33.10990 -30.47530 -28.99350 -26.17110 -24.24907 -23.37009 -20.78617 -19.85133 -18.85031 -16.31438 -14.82118 -14.64305 -14.30070 -14.05875 -13.67796 -12.88656 -12.74914 -12.34367 -11.91819 -11.69419 -11.53184 -11.03746 -10.85567 -10.57103 -10.53152 -10.34300 -10.23632 -9.98112 -9.93768 -9.64117 -8.95496 -8.68611 -8.35097 -7.73979 -5.98638 -4.01368 3.29843 3.38466 3.41761 4.44155 4.79864 5.33821 5.62421 5.63682 5.67868 5.80269 5.82906 5.96248 6.12482 6.17814 6.25037 6.30299 6.37434 6.40916 6.47424 6.60522 6.69251 6.86945 7.04807 7.13835 7.24071 7.32354 7.62085 7.73600 7.83848 7.94256 8.05771 8.51523 9.01512 9.61952 11.10569 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.026953 B = 0.014178 C = 0.010386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.595315 B = 1974.407216 C = 2695.392397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.091 4.091 4 C 0.065 3.935 5 H 0.042 0.958 6 C 0.057 3.943 7 H 0.034 0.966 8 C -0.508 4.508 9 H 0.055 0.945 10 C 0.062 3.938 11 N -0.887 5.887 12 Si 0.885 3.115 13 H -0.274 1.274 14 H -0.285 1.285 15 H -0.286 1.286 16 C -0.094 4.094 17 C 0.031 3.969 18 N -0.520 5.520 19 C 0.017 3.983 20 H 0.049 0.951 21 H 0.047 0.953 22 H 0.043 0.957 23 H 0.082 0.918 24 H 0.052 0.948 25 H 0.041 0.959 26 H 0.060 0.940 27 H 0.259 0.741 28 H 0.044 0.956 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.030 0.970 32 H 0.056 0.944 33 H 0.020 0.980 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.149 3.446 6.044 8.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.129 4.129 4 C -0.043 4.043 5 H 0.060 0.940 6 C 0.038 3.962 7 H 0.052 0.948 8 C -0.546 4.546 9 H 0.073 0.927 10 C -0.140 4.140 11 N -0.526 5.526 12 Si 0.713 3.287 13 H -0.198 1.198 14 H -0.211 1.211 15 H -0.212 1.212 16 C -0.133 4.133 17 C -0.097 4.097 18 N -0.244 5.244 19 C -0.133 4.133 20 H 0.068 0.932 21 H 0.066 0.934 22 H 0.062 0.938 23 H 0.101 0.899 24 H 0.071 0.929 25 H 0.059 0.941 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.038 0.962 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.366 3.813 5.555 8.029 hybrid contribution 0.853 -1.503 0.639 1.843 sum -3.513 2.310 6.194 7.486 Atomic orbital electron populations 1.21786 0.97295 1.00661 1.00824 1.21495 0.93831 0.97330 1.03291 1.21371 0.94873 0.95976 1.00640 1.22943 0.94308 0.86711 1.00322 0.94030 1.19404 0.92155 0.93750 0.90930 0.94784 1.21216 1.37250 0.94910 1.01269 0.92688 1.24955 0.95978 0.97670 0.95361 1.69999 1.41094 1.36015 1.05447 0.86644 0.78098 0.85851 0.78067 1.19840 1.21074 1.21179 1.22216 1.01573 0.95545 0.93954 1.23180 0.88564 0.99383 0.98597 1.65300 1.15999 1.23809 1.19253 1.22436 1.01046 0.99365 0.90412 0.93152 0.93433 0.93777 0.89888 0.92916 0.94073 0.92146 0.93166 0.93689 0.91567 0.92194 0.95199 0.92517 0.96179 0.92161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.91 37.16 0.37 -1.83 16 2 C -0.12 -2.20 5.48 -26.73 -0.15 -2.35 16 3 C -0.09 -1.71 4.88 -26.73 -0.13 -1.84 16 4 C 0.06 1.38 1.83 -66.07 -0.12 1.26 16 5 H 0.04 0.93 7.43 -51.93 -0.39 0.55 16 6 C 0.06 1.41 2.12 -90.39 -0.19 1.22 16 7 H 0.03 0.93 7.74 -51.93 -0.40 0.53 16 8 C -0.51 -13.59 7.34 -34.44 -0.25 -13.84 16 9 H 0.05 1.47 7.58 -52.49 -0.40 1.07 16 10 C 0.06 1.69 5.09 -17.82 -0.09 1.60 16 11 N -0.89 -25.31 12.35 55.43 0.68 -24.63 16 12 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 13 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 16 C -0.09 -2.26 5.75 -25.35 -0.15 -2.41 16 17 C 0.03 0.62 6.49 -2.17 -0.01 0.61 16 18 N -0.52 -10.36 5.34 -230.33 -1.23 -11.59 16 19 C 0.02 0.27 9.41 60.06 0.56 0.84 16 20 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 21 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.08 1.73 7.13 -51.93 -0.37 1.36 16 24 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.04 0.71 7.41 -51.93 -0.38 0.32 16 26 H 0.06 1.18 7.96 -51.93 -0.41 0.77 16 27 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.07 1.72 7.24 -51.93 -0.38 1.35 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.03 0.60 8.00 -51.93 -0.42 0.18 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.02 0.33 7.95 -51.93 -0.41 -0.09 16 34 H 0.06 0.91 7.47 -51.93 -0.39 0.52 16 LS Contribution 268.06 15.07 4.04 4.04 Total: -1.00 -27.65 268.06 -7.73 -35.38 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -6.04 Total: -2.57 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: -0.16 Total: -16.74 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: -0.55 Total: -36.22 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -27.65 -7.73 -35.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261150882.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.343 kcal (2) G-P(sol) polarization free energy of solvation -27.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds