Wall clock time and date at job start Mon Mar 30 2020 01:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.47203 * 2 1 4 4 C 1.52997 * 110.06567 * 299.93497 * 3 2 1 5 5 C 1.53997 * 109.91769 * 61.13800 * 3 2 1 6 6 H 1.09005 * 110.30703 * 359.21400 * 5 3 2 7 7 C 1.50697 * 110.30670 * 237.04609 * 5 3 2 8 8 H 1.07998 * 120.00824 * 2.83084 * 7 5 3 9 9 C 1.37887 * 119.99597 * 182.82591 * 7 5 3 10 10 N 1.31511 * 119.99827 * 179.97438 * 9 7 5 11 11 Si 1.86799 * 120.00126 * 0.02562 * 9 7 5 12 12 H 1.48498 * 109.47049 * 89.99510 * 11 9 7 13 13 H 1.48500 * 109.46951 * 209.99799 * 11 9 7 14 14 H 1.48505 * 109.46804 * 329.99653 * 11 9 7 15 15 C 1.54589 * 105.13967 * 118.12582 * 5 3 2 16 16 C 1.54934 * 102.92175 * 338.04673 * 15 5 3 17 17 N 1.47894 * 109.91823 * 178.72712 * 3 2 1 18 18 C 1.46907 * 111.00038 * 26.49311 * 17 3 2 19 19 H 1.08998 * 109.46820 * 305.92244 * 1 2 3 20 20 H 1.08995 * 109.46976 * 65.92117 * 1 2 3 21 21 H 1.08992 * 109.46784 * 185.92423 * 1 2 3 22 22 H 1.08999 * 109.47266 * 240.00035 * 2 1 3 23 23 H 1.08998 * 109.47150 * 119.99637 * 2 1 3 24 24 H 1.09007 * 109.46980 * 300.24927 * 4 3 2 25 25 H 1.09002 * 109.47209 * 60.24543 * 4 3 2 26 26 H 1.09002 * 109.47283 * 180.24727 * 4 3 2 27 27 H 0.96998 * 120.00235 * 180.02562 * 10 9 7 28 28 H 1.09003 * 110.72624 * 219.68106 * 15 5 3 29 29 H 1.09010 * 110.72073 * 96.40403 * 15 5 3 30 30 H 1.08996 * 110.66545 * 278.97203 * 16 15 5 31 31 H 1.09002 * 110.81100 * 155.91676 * 16 15 5 32 32 H 1.09001 * 109.46948 * 296.26764 * 18 17 3 33 33 H 1.09000 * 109.46869 * 176.27458 * 18 17 3 34 34 H 1.08994 * 109.46915 * 56.27223 * 18 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 1.5389 2.1765 -1.2454 5 6 1.5560 2.1701 1.2680 6 1 0.9467 1.5029 1.8777 7 6 0.7726 3.4028 0.8968 8 1 0.5862 3.6318 -0.1420 9 6 0.2935 4.2382 1.8836 10 7 -0.3898 5.3142 1.5597 11 14 0.6163 3.8425 3.6805 12 1 1.8892 4.4777 4.1063 13 1 -0.4993 4.3642 4.5103 14 1 0.7154 2.3708 3.8531 15 6 2.8453 2.5617 2.0258 16 6 3.8929 1.5681 1.4637 17 7 3.5186 1.4542 0.0309 18 6 4.0673 0.2264 -0.5605 19 1 -0.3633 0.6029 0.8322 20 1 -0.3633 0.4193 -0.9382 21 1 -0.3632 -1.0221 0.1061 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 1.8996 1.6654 -2.1381 25 1 0.4490 2.1860 -1.2476 26 1 1.9112 3.2010 -1.2378 27 1 -0.7265 5.9021 2.2539 28 1 2.7190 2.4227 3.0995 29 1 3.1285 3.5898 1.7997 30 1 3.8116 0.6015 1.9607 31 1 4.9012 1.9688 1.5673 32 1 3.7670 -0.6320 0.0405 33 1 5.1551 0.2898 -0.5853 34 1 3.6868 0.1105 -1.5753 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261152637.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:58 Heat of formation + Delta-G solvation = -10.447195 kcal Electronic energy + Delta-G solvation = -13796.327082 eV Core-core repulsion = 11728.524662 eV Total energy + Delta-G solvation = -2067.802420 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.90920 -35.14962 -34.46103 -32.92158 -30.54652 -28.08271 -26.04539 -25.30518 -23.63075 -22.03900 -19.14280 -18.46127 -16.85974 -16.36668 -16.24018 -15.58983 -15.14303 -14.73393 -14.27999 -13.92387 -13.71466 -13.25974 -12.93926 -12.79395 -12.59000 -12.28388 -12.25490 -12.02220 -11.99902 -11.61457 -11.49748 -11.45608 -10.85733 -10.69101 -10.63612 -9.11757 -8.18041 -6.18150 1.33174 1.35383 1.43773 2.39174 3.14531 3.22314 3.92789 4.01376 4.16022 4.31801 4.41283 4.48610 4.63128 4.69960 4.71832 4.78171 4.85786 4.92620 5.04623 5.06159 5.11125 5.15292 5.23593 5.34240 5.37538 5.53143 5.55465 5.69514 5.84660 6.22954 6.37596 6.50552 6.89350 7.45340 8.96923 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.037869 B = 0.015156 C = 0.013456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.209568 B = 1846.960010 C = 2080.303274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.127 4.127 3 C 0.104 3.896 4 C -0.098 4.098 5 C 0.010 3.990 6 H 0.029 0.971 7 C -0.500 4.500 8 H 0.066 0.934 9 C 0.013 3.987 10 N -0.953 5.953 11 Si 0.928 3.072 12 H -0.271 1.271 13 H -0.300 1.300 14 H -0.250 1.250 15 C -0.137 4.137 16 C 0.046 3.954 17 N -0.530 5.530 18 C 0.016 3.984 19 H 0.040 0.960 20 H 0.052 0.948 21 H 0.066 0.934 22 H 0.079 0.921 23 H 0.056 0.944 24 H 0.046 0.954 25 H 0.048 0.952 26 H 0.034 0.966 27 H 0.260 0.740 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.086 0.914 32 H 0.037 0.963 33 H 0.074 0.926 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.988 -12.119 -1.037 14.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.166 4.166 3 C 0.014 3.986 4 C -0.155 4.155 5 C -0.009 4.009 6 H 0.047 0.953 7 C -0.538 4.538 8 H 0.084 0.916 9 C -0.183 4.183 10 N -0.595 5.595 11 Si 0.755 3.245 12 H -0.196 1.196 13 H -0.228 1.228 14 H -0.174 1.174 15 C -0.175 4.175 16 C -0.082 4.082 17 N -0.254 5.254 18 C -0.132 4.132 19 H 0.059 0.941 20 H 0.072 0.928 21 H 0.085 0.915 22 H 0.097 0.903 23 H 0.075 0.925 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.104 0.896 32 H 0.056 0.944 33 H 0.093 0.907 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.138 -11.552 -1.288 13.640 hybrid contribution -0.554 -0.047 1.396 1.502 sum 6.584 -11.599 0.108 13.338 Atomic orbital electron populations 1.21763 0.95556 1.01287 1.01856 1.22048 0.96791 0.96056 1.01687 1.21666 0.86677 0.94111 0.96102 1.21548 0.99495 0.99041 0.95434 1.20035 0.92807 0.94831 0.93218 0.95312 1.21733 1.31088 1.06166 0.94839 0.91600 1.25743 0.95080 0.94884 1.02623 1.70035 1.39748 1.15419 1.34317 0.86125 0.77265 0.79689 0.81400 1.19646 1.22766 1.17372 1.22882 0.97319 0.99281 0.98064 1.23129 0.98883 0.97811 0.88364 1.64765 1.08315 1.36827 1.15486 1.22572 1.00490 0.90329 0.99802 0.94076 0.92844 0.91459 0.90292 0.92487 0.93478 0.93296 0.94654 0.93071 0.93054 0.93031 0.93146 0.89592 0.94434 0.90741 0.91168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.71 9.23 71.98 0.66 -4.05 16 2 C -0.13 -3.98 3.60 30.60 0.11 -3.87 16 3 C 0.10 3.96 0.64 3.67 0.00 3.96 16 4 C -0.10 -3.95 6.97 71.98 0.50 -3.45 16 5 C 0.01 0.47 1.47 -10.66 -0.02 0.46 16 6 H 0.03 1.34 5.56 -2.38 -0.01 1.33 16 7 C -0.50 -27.72 8.11 25.60 0.21 -27.52 16 8 H 0.07 3.95 4.95 -2.91 -0.01 3.94 16 9 C 0.01 0.73 5.46 84.66 0.46 1.19 16 10 N -0.95 -59.89 13.96 21.45 0.30 -59.59 16 11 Si 0.93 45.08 24.70 68.60 1.69 46.77 16 12 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 13 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 14 H -0.25 -11.25 6.36 99.48 0.63 -10.62 16 15 C -0.14 -5.78 4.75 31.80 0.15 -5.63 16 16 C 0.05 1.54 6.55 86.65 0.57 2.11 16 17 N -0.53 -18.42 5.17 -859.96 -4.45 -22.87 16 18 C 0.02 0.42 8.31 127.69 1.06 1.48 16 19 H 0.04 1.55 6.38 -2.39 -0.02 1.53 16 20 H 0.05 1.72 6.82 -2.39 -0.02 1.70 16 21 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 22 H 0.08 2.12 6.54 -2.39 -0.02 2.10 16 23 H 0.06 1.71 7.67 -2.39 -0.02 1.69 16 24 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 25 H 0.05 2.08 5.73 -2.39 -0.01 2.07 16 26 H 0.03 1.63 7.00 -2.39 -0.02 1.61 16 27 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 28 H 0.05 2.08 5.94 -2.39 -0.01 2.07 16 29 H 0.05 2.41 7.84 -2.38 -0.02 2.39 16 30 H 0.05 1.51 7.91 -2.39 -0.02 1.49 16 31 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.04 0.89 6.47 -2.39 -0.02 0.88 16 33 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.07 1.72 7.54 -2.39 -0.02 1.71 16 Total: -1.00 -63.06 246.72 2.25 -60.81 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 0.99 Total: 10.21 kcal Atomic # 6 Polarization: -39.04 SS G_CDS: 3.71 Total: -35.33 kcal Atomic # 7 Polarization: -78.31 SS G_CDS: -4.15 Total: -82.46 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.69 Total: 46.77 kcal Total: -63.06 2.25 -60.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261152637.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.364 kcal (2) G-P(sol) polarization free energy of solvation -63.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds