Wall clock time and date at job start Mon Mar 30 2020 02:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47061 * 2 1 4 4 C 1.53004 * 109.46868 * 119.99632 * 2 1 3 5 5 C 1.52998 * 109.47123 * 175.00321 * 4 2 1 6 6 H 1.08994 * 109.91175 * 54.29760 * 5 4 2 7 7 N 1.47913 * 110.07776 * 293.08904 * 5 4 2 8 8 C 1.48538 * 105.81627 * 215.22404 * 7 5 4 9 9 C 1.54935 * 103.22747 * 39.21179 * 8 7 5 10 10 C 1.53991 * 109.91770 * 175.40615 * 5 4 2 11 11 H 1.09000 * 110.30836 * 239.69040 * 10 5 4 12 12 C 1.50698 * 110.30886 * 1.85375 * 10 5 4 13 13 H 1.08002 * 120.00237 * 54.80409 * 12 10 5 14 14 C 1.37879 * 120.00429 * 234.80218 * 12 10 5 15 15 N 1.31507 * 120.00439 * 173.01634 * 14 12 10 16 16 Si 1.86808 * 119.99595 * 353.01241 * 14 12 10 17 17 H 1.48508 * 109.46765 * 85.96647 * 16 14 12 18 18 H 1.48495 * 109.46978 * 205.96340 * 16 14 12 19 19 H 1.48494 * 109.47227 * 325.97011 * 16 14 12 20 20 H 1.08999 * 109.47094 * 300.00092 * 1 2 3 21 21 H 1.08999 * 109.46777 * 60.00530 * 1 2 3 22 22 H 1.08995 * 109.46835 * 180.02562 * 1 2 3 23 23 H 1.08993 * 109.47402 * 239.99599 * 2 1 3 24 24 H 1.09002 * 109.47259 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47054 * 299.99909 * 3 2 1 26 26 H 1.09007 * 109.47302 * 59.99674 * 3 2 1 27 27 H 1.09004 * 109.46761 * 55.00040 * 4 2 1 28 28 H 1.08999 * 109.47319 * 295.00258 * 4 2 1 29 29 H 1.00895 * 110.99932 * 335.73911 * 7 5 4 30 30 H 1.08994 * 110.66508 * 280.77291 * 8 7 5 31 31 H 1.09000 * 110.66288 * 157.64300 * 8 7 5 32 32 H 1.09002 * 110.72238 * 204.22710 * 9 8 7 33 33 H 1.08997 * 110.72492 * 80.94021 * 9 8 7 34 34 H 0.97000 * 120.00451 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1882 6 1 4.0024 0.1563 1.0405 7 7 3.9653 -1.7300 0.0840 8 6 5.1725 -2.4493 0.5652 9 6 4.8475 -2.7313 2.0536 10 6 4.0988 -1.4518 2.4923 11 1 4.7842 -0.7630 2.9862 12 6 2.9566 -1.8029 3.4105 13 1 2.1574 -2.4388 3.0594 14 6 2.9318 -1.3124 4.6988 15 7 1.8729 -1.5033 5.4549 16 14 4.4026 -0.3767 5.3704 17 1 4.2905 1.0561 4.9963 18 1 4.4348 -0.5010 6.8498 19 1 5.6514 -0.9412 4.7988 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 3.1301 1.4425 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9564 0.8900 27 1 1.6053 -1.7198 1.2952 28 1 1.7516 -0.1583 2.1370 29 1 3.2249 -2.3770 -0.1421 30 1 6.0569 -1.8182 0.4773 31 1 5.3083 -3.3820 0.0177 32 1 5.7632 -2.8594 2.6308 33 1 4.2045 -3.6062 2.1489 34 1 1.8553 -1.1580 6.3611 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261168797.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:42 Heat of formation + Delta-G solvation = -23.868892 kcal Electronic energy + Delta-G solvation = -13332.853699 eV Core-core repulsion = 11264.469270 eV Total energy + Delta-G solvation = -2068.384428 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.43768 -35.09414 -32.63929 -29.61416 -29.18951 -26.69573 -24.98742 -23.54635 -20.96393 -19.36330 -18.66807 -16.73998 -15.28426 -14.66344 -14.33968 -14.01955 -13.44804 -12.96251 -12.58418 -12.54209 -12.04665 -11.77495 -11.58124 -11.05471 -11.03086 -10.79359 -10.64255 -10.39947 -10.13119 -9.94984 -9.79257 -9.61357 -9.30666 -8.80630 -8.50807 -7.82953 -6.08974 -4.03947 3.27522 3.36030 3.37947 4.41027 5.05707 5.21212 5.46792 5.52734 5.55225 5.72157 5.96680 6.05929 6.09808 6.20806 6.22334 6.32204 6.33461 6.42835 6.48627 6.60678 6.65981 6.70896 6.83387 6.92391 7.12887 7.19234 7.22037 7.40793 7.70012 7.73826 8.11997 8.52658 8.94605 9.54611 11.03843 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.027820 B = 0.014653 C = 0.011490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.234535 B = 1910.460340 C = 2436.394130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.101 4.101 3 C -0.143 4.143 4 C -0.088 4.088 5 C 0.074 3.926 6 H 0.063 0.937 7 N -0.674 5.674 8 C 0.037 3.963 9 C -0.151 4.151 10 C -0.013 4.013 11 H 0.036 0.964 12 C -0.498 4.498 13 H 0.075 0.925 14 C 0.069 3.931 15 N -0.900 5.900 16 Si 0.877 3.123 17 H -0.277 1.277 18 H -0.291 1.291 19 H -0.270 1.270 20 H 0.052 0.948 21 H 0.042 0.958 22 H 0.050 0.950 23 H 0.066 0.934 24 H 0.056 0.944 25 H 0.040 0.960 26 H 0.049 0.951 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.328 0.672 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.000 2.027 -8.730 9.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.120 4.120 3 C -0.200 4.200 4 C -0.126 4.126 5 C -0.036 4.036 6 H 0.081 0.919 7 N -0.302 5.302 8 C -0.093 4.093 9 C -0.190 4.190 10 C -0.034 4.034 11 H 0.055 0.945 12 C -0.536 4.536 13 H 0.093 0.907 14 C -0.132 4.132 15 N -0.538 5.538 16 Si 0.705 3.295 17 H -0.203 1.203 18 H -0.218 1.218 19 H -0.195 1.195 20 H 0.071 0.929 21 H 0.061 0.939 22 H 0.069 0.931 23 H 0.085 0.915 24 H 0.075 0.925 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.143 0.857 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.248 2.579 -8.966 9.597 hybrid contribution 0.415 -0.153 1.301 1.374 sum 2.664 2.425 -7.665 8.470 Atomic orbital electron populations 1.21824 0.96411 1.01168 1.00738 1.21227 0.94540 0.96240 0.99960 1.21831 1.01255 0.96511 1.00407 1.21715 0.94264 1.00398 0.96182 1.22537 0.95325 0.95811 0.89881 0.91864 1.63017 1.07406 1.21050 1.38726 1.23049 0.94562 0.96727 0.94932 1.23283 0.99649 1.00963 0.95108 1.20450 0.95729 0.92674 0.94522 0.94550 1.20924 1.06105 1.30747 0.95808 0.90662 1.25084 0.95443 0.95691 0.96999 1.69903 1.28072 1.46703 1.09136 0.86855 0.84213 0.80646 0.77775 1.20278 1.21772 1.19472 0.92896 0.93859 0.93133 0.91513 0.92496 0.94041 0.93171 0.92288 0.90193 0.85699 0.91649 0.92445 0.93194 0.91914 0.92741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.19 37.16 0.34 -1.83 16 2 C -0.10 -1.66 2.88 -90.62 -0.26 -1.92 16 3 C -0.14 -2.22 8.96 37.15 0.33 -1.89 16 4 C -0.09 -1.74 2.86 -26.73 -0.08 -1.81 16 5 C 0.07 1.49 3.23 -66.64 -0.22 1.28 16 6 H 0.06 1.28 6.35 -51.93 -0.33 0.95 16 7 N -0.67 -12.14 6.90 -103.13 -0.71 -12.86 16 8 C 0.04 0.64 7.55 -1.90 -0.01 0.63 16 9 C -0.15 -3.07 6.60 -24.87 -0.16 -3.23 16 10 C -0.01 -0.31 2.86 -90.42 -0.26 -0.57 16 11 H 0.04 0.87 4.91 -51.93 -0.25 0.61 16 12 C -0.50 -13.28 6.60 -34.44 -0.23 -13.51 16 13 H 0.08 2.18 6.99 -52.49 -0.37 1.81 16 14 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 15 N -0.90 -26.85 13.96 55.43 0.77 -26.08 16 16 Si 0.88 21.52 26.96 -169.99 -4.58 16.94 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 19 H -0.27 -6.45 6.80 56.52 0.38 -6.07 16 20 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 21 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.07 1.08 7.72 -51.93 -0.40 0.68 16 24 H 0.06 0.91 6.46 -51.93 -0.34 0.57 16 25 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 1.24 6.98 -51.93 -0.36 0.88 16 28 H 0.08 1.82 7.32 -51.93 -0.38 1.44 16 29 H 0.33 5.69 8.33 -39.29 -0.33 5.36 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 1.32 7.86 -51.93 -0.41 0.91 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 261.38 15.07 3.94 3.94 Total: -1.00 -27.87 261.38 -6.92 -34.79 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -5.70 Total: 4.28 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: -0.64 Total: -21.01 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.06 Total: -38.93 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.58 Total: 16.94 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -27.87 -6.92 -34.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261168797.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.919 kcal (2) G-P(sol) polarization free energy of solvation -27.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds