Wall clock time and date at job start Mon Mar 30 2020 01:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86792 * 120.00320 * 2 1 4 4 H 1.48500 * 109.47565 * 239.99800 * 3 2 1 5 5 H 1.48505 * 109.47350 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47345 * 119.99791 * 3 2 1 7 7 C 1.37881 * 119.99861 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00291 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99510 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46723 * 180.02562 * 9 7 2 11 11 H 1.09005 * 108.79258 * 306.44298 * 10 9 7 12 12 C 1.45545 * 108.89832 * 64.99417 * 10 9 7 13 13 C 1.54246 * 112.40383 * 182.68848 * 12 10 9 14 14 C 1.50472 * 108.52183 * 280.01221 * 13 12 10 15 15 C 1.54066 * 112.49483 * 94.15405 * 14 13 12 16 16 C 1.54067 * 112.82037 * 318.28769 * 15 14 13 17 17 C 1.50474 * 112.49391 * 318.27969 * 16 15 14 18 18 H 1.09003 * 109.78896 * 213.95522 * 17 16 15 19 19 N 1.46905 * 109.62897 * 334.43980 * 17 16 15 20 20 H 0.97004 * 119.99841 * 0.02562 * 1 2 3 21 21 H 1.08989 * 109.47212 * 60.00618 * 9 7 2 22 22 H 1.08997 * 109.47375 * 299.99703 * 9 7 2 23 23 H 1.08998 * 108.89226 * 61.94160 * 12 10 9 24 24 H 1.08997 * 108.89504 * 303.44651 * 12 10 9 25 25 H 1.08997 * 109.63034 * 39.73238 * 13 12 10 26 26 H 1.09003 * 109.62534 * 160.30588 * 13 12 10 27 27 H 1.09000 * 108.87666 * 214.93041 * 14 13 12 28 28 H 1.08992 * 108.87713 * 333.38083 * 14 13 12 29 29 H 1.09001 * 108.81253 * 197.41939 * 15 14 13 30 30 H 1.09004 * 108.72649 * 79.08696 * 15 14 13 31 31 H 1.09002 * 108.87631 * 197.51141 * 16 15 14 32 32 H 1.08999 * 108.88045 * 79.06016 * 16 15 14 33 33 H 1.00901 * 110.99727 * 175.19834 * 19 17 16 34 34 H 1.00893 * 111.00129 * 299.15993 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6621 -0.0005 11 1 2.9392 -3.5307 -0.8307 12 6 2.9938 -3.6422 1.2474 13 6 4.0698 -4.7459 1.3050 14 6 3.4034 -6.0445 1.6706 15 6 3.0215 -6.8798 0.4336 16 6 2.4294 -6.0262 -0.7041 17 6 1.4710 -4.9811 -0.2008 18 1 0.6734 -4.8307 -0.9285 19 7 0.8955 -5.4148 1.0794 20 1 -0.4850 0.8401 -0.0004 21 1 0.6240 -2.5567 -0.8902 22 1 0.6246 -2.5571 0.8897 23 1 2.3007 -3.7813 2.0771 24 1 3.4778 -2.6714 1.3531 25 1 4.5488 -4.8416 0.3306 26 1 4.8149 -4.4918 2.0590 27 1 4.0829 -6.6266 2.2931 28 1 2.5011 -5.8290 2.2428 29 1 2.2878 -7.6299 0.7288 30 1 3.9131 -7.3870 0.0650 31 1 1.9038 -6.6810 -1.3993 32 1 3.2433 -5.5322 -1.2347 33 1 0.3092 -4.6949 1.4746 34 1 0.3853 -6.2786 0.9723 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261219503.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:38 Heat of formation + Delta-G solvation = -41.314126 kcal Electronic energy + Delta-G solvation = -13346.449566 eV Core-core repulsion = 11277.308656 eV Total energy + Delta-G solvation = -2069.140911 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.44340 -35.63469 -34.13767 -33.62937 -30.80209 -28.91746 -25.91331 -24.89726 -22.96404 -20.37325 -19.72393 -18.54316 -17.00317 -16.80480 -16.36210 -15.25768 -15.17970 -14.47968 -14.04869 -13.98820 -13.91224 -13.55767 -12.91480 -12.79300 -12.61315 -12.38978 -12.16587 -11.75306 -11.50187 -11.27836 -11.19884 -10.99817 -10.81345 -10.53021 -10.51309 -9.15409 -8.18502 -6.27213 1.38060 1.40527 1.48265 2.40762 3.14414 3.79849 3.97459 4.03946 4.20213 4.46614 4.49777 4.60463 4.69707 4.71089 4.77700 5.10977 5.13370 5.22669 5.30939 5.35955 5.47608 5.53321 5.55488 5.56511 5.69267 5.74202 5.90465 5.95937 6.08771 6.29990 6.39310 6.77144 6.88383 7.40604 8.92773 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.056538 B = 0.009472 C = 0.008777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.120002 B = 2955.466939 C = 3189.225635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.958 3.042 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.531 4.531 8 H 0.056 0.944 9 C 0.033 3.967 10 C -0.063 4.063 11 H 0.041 0.959 12 C -0.086 4.086 13 C -0.107 4.107 14 C -0.118 4.118 15 C -0.085 4.085 16 C -0.111 4.111 17 C 0.103 3.897 18 H 0.015 0.985 19 N -0.822 5.822 20 H 0.262 0.738 21 H -0.021 1.021 22 H -0.005 1.005 23 H 0.056 0.944 24 H 0.030 0.970 25 H 0.049 0.951 26 H 0.055 0.945 27 H 0.046 0.954 28 H 0.094 0.906 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.334 0.666 34 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.957 -11.985 1.604 13.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.783 3.217 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.569 4.569 8 H 0.074 0.926 9 C -0.004 4.004 10 C -0.082 4.082 11 H 0.060 0.940 12 C -0.124 4.124 13 C -0.144 4.144 14 C -0.155 4.155 15 C -0.123 4.123 16 C -0.149 4.149 17 C -0.008 4.008 18 H 0.033 0.967 19 N -0.352 5.352 20 H 0.070 0.930 21 H -0.003 1.003 22 H 0.013 0.987 23 H 0.074 0.926 24 H 0.049 0.951 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.112 0.888 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.147 0.853 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.567 -11.920 1.842 13.284 hybrid contribution -0.907 1.453 -0.735 1.864 sum 4.660 -10.467 1.106 11.511 Atomic orbital electron populations 1.70084 1.07626 1.27554 1.52133 1.25917 0.95725 1.03067 0.95100 0.85609 0.78379 0.78670 0.79066 1.19429 1.20849 1.19301 1.21638 0.93250 0.92366 1.49662 0.92564 1.19130 0.94048 0.93113 0.94097 1.20021 0.96634 0.93531 0.98032 0.94048 1.20188 0.97247 0.97331 0.97591 1.21252 0.96919 0.95848 1.00422 1.21466 1.01503 0.94443 0.98122 1.21497 0.99276 0.97064 0.94444 1.21402 0.98114 0.97035 0.98360 1.21022 0.95232 0.94443 0.90144 0.96730 1.59136 1.42059 1.08523 1.25459 0.92970 1.00269 0.98691 0.92583 0.95124 0.93189 0.92652 0.93552 0.88805 0.91799 0.92968 0.91944 0.92811 0.85340 0.84389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.36 13.29 21.45 0.28 -57.07 16 2 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 3 Si 0.96 45.13 29.54 68.60 2.03 47.16 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.53 -30.55 8.29 25.60 0.21 -30.34 16 8 H 0.06 3.15 6.96 -2.91 -0.02 3.13 16 9 C 0.03 1.75 4.23 29.85 0.13 1.88 16 10 C -0.06 -2.63 1.51 -12.65 -0.02 -2.65 16 11 H 0.04 1.80 7.46 -2.38 -0.02 1.78 16 12 C -0.09 -3.35 4.29 28.74 0.12 -3.23 16 13 C -0.11 -3.33 5.61 30.20 0.17 -3.16 16 14 C -0.12 -3.17 5.28 30.14 0.16 -3.01 16 15 C -0.09 -2.05 5.30 31.32 0.17 -1.89 16 16 C -0.11 -3.09 5.23 30.14 0.16 -2.93 16 17 C 0.10 3.46 3.00 44.52 0.13 3.60 16 18 H 0.01 0.54 7.84 -2.39 -0.02 0.52 16 19 N -0.82 -23.76 4.63 -170.33 -0.79 -24.54 16 20 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 21 H -0.02 -1.23 7.95 -2.39 -0.02 -1.24 16 22 H -0.01 -0.29 7.59 -2.39 -0.02 -0.31 16 23 H 0.06 2.22 6.58 -2.39 -0.02 2.21 16 24 H 0.03 1.34 6.56 -2.39 -0.02 1.32 16 25 H 0.05 1.55 6.98 -2.39 -0.02 1.53 16 26 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.09 2.71 5.18 -2.39 -0.01 2.70 16 29 H 0.06 1.37 7.99 -2.39 -0.02 1.35 16 30 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.05 1.58 6.63 -2.39 -0.02 1.57 16 33 H 0.33 10.76 8.17 -89.69 -0.73 10.03 16 34 H 0.34 8.01 8.85 -89.70 -0.79 7.22 16 Total: -1.00 -62.32 252.59 2.77 -59.55 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -0.44 Total: 16.21 kcal Atomic # 6 Polarization: -42.99 SS G_CDS: 1.69 Total: -41.30 kcal Atomic # 7 Polarization: -81.11 SS G_CDS: -0.50 Total: -81.62 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -62.32 2.77 -59.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261219503.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.235 kcal (2) G-P(sol) polarization free energy of solvation -62.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds