Wall clock time and date at job start Mon Mar 30 2020 01:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 119.99811 * 2 1 4 4 H 1.48501 * 109.46949 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47352 * 299.99680 * 3 2 1 6 6 H 1.48505 * 109.47523 * 60.00226 * 3 2 1 7 7 C 1.37876 * 119.99783 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99907 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00474 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47405 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.78233 * 55.47956 * 10 9 7 12 12 C 1.54245 * 109.62775 * 295.00119 * 10 9 7 13 13 C 1.45542 * 112.32700 * 160.25679 * 12 10 9 14 14 C 1.54245 * 112.40792 * 61.98392 * 13 12 10 15 15 C 1.50476 * 108.51856 * 280.00900 * 14 13 12 16 16 C 1.54056 * 112.50048 * 94.15187 * 15 14 13 17 17 C 1.50546 * 109.57981 * 176.04748 * 10 9 7 18 18 H 1.09003 * 108.91864 * 334.67554 * 17 10 9 19 19 N 1.46906 * 108.92509 * 93.16717 * 17 10 9 20 20 H 0.96999 * 119.99833 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46715 * 59.99237 * 9 7 2 22 22 H 1.08999 * 109.46818 * 299.99967 * 9 7 2 23 23 H 1.09002 * 108.89744 * 39.55102 * 12 10 9 24 24 H 1.09003 * 108.89355 * 280.96232 * 12 10 9 25 25 H 1.08997 * 108.89204 * 182.73719 * 13 12 10 26 26 H 1.09002 * 108.89666 * 301.22803 * 13 12 10 27 27 H 1.09002 * 109.62642 * 39.71377 * 14 13 12 28 28 H 1.08995 * 109.62931 * 160.29548 * 14 13 12 29 29 H 1.09003 * 108.87568 * 214.93364 * 15 14 13 30 30 H 1.09003 * 108.87347 * 333.47062 * 15 14 13 31 31 H 1.09000 * 108.81295 * 79.14131 * 16 15 14 32 32 H 1.08999 * 108.81700 * 197.42260 * 16 15 14 33 33 H 1.00894 * 111.00031 * 182.90547 * 19 17 10 34 34 H 1.00901 * 110.99572 * 306.85996 * 19 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 1 2.9268 -3.5648 0.8456 12 6 3.0486 -3.6569 -1.3162 13 6 4.2888 -4.4113 -1.2102 14 6 4.0452 -5.9026 -0.9005 15 6 3.7761 -6.0470 0.5729 16 6 2.2713 -6.0276 0.9022 17 6 1.4976 -4.9651 0.0983 18 1 0.5376 -4.7862 0.5828 19 7 1.2547 -5.4779 -1.2567 20 1 -0.4850 0.8401 0.0004 21 1 0.6247 -2.5570 -0.8896 22 1 0.6241 -2.5567 0.8903 23 1 3.2840 -2.6263 -1.5821 24 1 2.4362 -4.0935 -2.1051 25 1 4.8326 -4.3304 -2.1513 26 1 4.8972 -3.9804 -0.4150 27 1 3.1842 -6.2581 -1.4665 28 1 4.9285 -6.4815 -1.1700 29 1 4.2006 -6.9898 0.9182 30 1 4.2621 -5.2272 1.1021 31 1 1.8509 -7.0091 0.6832 32 1 2.1467 -5.8235 1.9656 33 1 0.7129 -6.3286 -1.2297 34 1 0.8055 -4.7811 -1.8319 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261273303.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:41 Heat of formation + Delta-G solvation = -21.147833 kcal Electronic energy + Delta-G solvation = -13353.217239 eV Core-core repulsion = 11284.950804 eV Total energy + Delta-G solvation = -2068.266435 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.95743 -33.67399 -33.01733 -31.73065 -29.76100 -26.78329 -24.35740 -23.17459 -21.30565 -19.51000 -17.94313 -16.44728 -15.38478 -15.29881 -14.46400 -14.15141 -13.73154 -12.98041 -12.58680 -12.34461 -11.93262 -11.82514 -11.71799 -11.04293 -10.82510 -10.58493 -10.47532 -10.22759 -10.16675 -9.91355 -9.48314 -9.32353 -8.99482 -8.87027 -8.30856 -7.91722 -5.96708 -3.97091 3.32653 3.40366 3.44873 4.49117 5.04659 5.25950 5.32285 5.39294 5.46352 5.82151 5.86453 5.93312 6.01086 6.14856 6.20790 6.30363 6.50785 6.60065 6.63016 6.82050 6.86400 6.92343 7.07146 7.23839 7.35666 7.39479 7.65684 7.74255 7.89570 7.95664 8.03874 8.49210 9.09555 9.66281 11.14792 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.049679 B = 0.009903 C = 0.009129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.480607 B = 2826.803446 C = 3066.433621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.054 3.946 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.509 4.509 8 H 0.057 0.943 9 C 0.027 3.973 10 C -0.074 4.074 11 H 0.058 0.942 12 C -0.108 4.108 13 C -0.102 4.102 14 C -0.125 4.125 15 C -0.107 4.107 16 C -0.106 4.106 17 C 0.097 3.903 18 H 0.028 0.972 19 N -0.835 5.835 20 H 0.258 0.742 21 H 0.013 0.987 22 H 0.011 0.989 23 H 0.061 0.939 24 H 0.071 0.929 25 H 0.041 0.959 26 H 0.043 0.957 27 H 0.101 0.899 28 H 0.037 0.963 29 H 0.043 0.957 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.321 0.679 34 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.336 -10.635 -1.039 11.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.716 3.284 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.547 4.547 8 H 0.075 0.925 9 C -0.010 4.010 10 C -0.093 4.093 11 H 0.076 0.924 12 C -0.145 4.145 13 C -0.139 4.139 14 C -0.163 4.163 15 C -0.145 4.145 16 C -0.144 4.144 17 C -0.014 4.014 18 H 0.046 0.954 19 N -0.367 5.367 20 H 0.068 0.932 21 H 0.031 0.969 22 H 0.029 0.971 23 H 0.080 0.920 24 H 0.089 0.911 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.119 0.881 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.133 0.867 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.980 -10.571 -1.074 11.734 hybrid contribution -0.611 1.181 0.368 1.379 sum 4.369 -9.390 -0.706 10.381 Atomic orbital electron populations 1.69975 1.06026 1.26298 1.51501 1.25024 0.94806 0.99168 0.95616 0.86593 0.80219 0.84070 0.77480 1.19737 1.21116 1.21158 1.21282 0.93068 0.90876 1.49491 0.92511 1.19210 0.93624 0.91616 0.96590 1.21040 0.97763 0.92998 0.97488 0.92382 1.20343 0.95808 0.99785 0.98603 1.20381 0.98454 0.95347 0.99743 1.21522 1.01706 0.96525 0.96522 1.21209 0.95589 1.00180 0.97510 1.21930 0.95700 0.98080 0.98738 1.21225 0.97068 0.94981 0.88142 0.95398 1.59338 1.54871 1.09004 1.13445 0.93222 0.96917 0.97087 0.92031 0.91074 0.94060 0.93873 0.88092 0.94402 0.93829 0.92680 0.93150 0.92756 0.86724 0.84228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.06 13.29 55.43 0.74 -26.33 16 2 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.51 -14.30 8.12 -34.44 -0.28 -14.58 16 8 H 0.06 1.58 7.26 -52.48 -0.38 1.19 16 9 C 0.03 0.68 4.27 -27.89 -0.12 0.56 16 10 C -0.07 -1.52 1.69 -91.20 -0.15 -1.67 16 11 H 0.06 1.25 6.96 -51.93 -0.36 0.89 16 12 C -0.11 -2.08 4.50 -29.60 -0.13 -2.21 16 13 C -0.10 -1.71 5.26 -29.60 -0.16 -1.87 16 14 C -0.13 -1.88 5.61 -27.34 -0.15 -2.03 16 15 C -0.11 -1.58 5.32 -27.44 -0.15 -1.72 16 16 C -0.11 -1.59 5.55 -25.62 -0.14 -1.73 16 17 C 0.10 1.66 2.95 -68.38 -0.20 1.46 16 18 H 0.03 0.52 7.61 -51.93 -0.40 0.12 16 19 N -0.84 -12.43 5.19 -5.23 -0.03 -12.46 16 20 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 21 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 22 H 0.01 0.30 8.00 -51.93 -0.42 -0.12 16 23 H 0.06 1.34 6.63 -51.93 -0.34 1.00 16 24 H 0.07 1.32 5.47 -51.93 -0.28 1.03 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.04 0.75 7.47 -51.93 -0.39 0.36 16 27 H 0.10 1.54 5.57 -51.93 -0.29 1.25 16 28 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.86 6.62 -51.93 -0.34 0.52 16 31 H 0.05 0.67 8.01 -51.93 -0.42 0.26 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.32 4.04 8.93 -39.29 -0.35 3.69 16 34 H 0.34 5.39 7.86 -39.29 -0.31 5.08 16 LS Contribution 253.47 15.07 3.82 3.82 Total: -1.00 -29.09 253.47 -7.60 -36.70 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -5.53 Total: 3.74 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: -1.58 Total: -22.34 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.71 Total: -38.78 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -29.09 -7.60 -36.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261273303.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.548 kcal (2) G-P(sol) polarization free energy of solvation -29.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds