Wall clock time and date at job start Mon Mar 30 2020 01:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 119.99811 * 2 1 4 4 H 1.48501 * 109.46949 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47352 * 299.99680 * 3 2 1 6 6 H 1.48505 * 109.47523 * 60.00226 * 3 2 1 7 7 C 1.37876 * 119.99783 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99907 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00474 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47405 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.78233 * 55.47956 * 10 9 7 12 12 C 1.54245 * 109.62775 * 295.00119 * 10 9 7 13 13 C 1.45542 * 112.32700 * 160.25679 * 12 10 9 14 14 C 1.54245 * 112.40792 * 61.98392 * 13 12 10 15 15 C 1.50476 * 108.51856 * 280.00900 * 14 13 12 16 16 C 1.54056 * 112.50048 * 94.15187 * 15 14 13 17 17 C 1.50546 * 109.57981 * 176.04748 * 10 9 7 18 18 H 1.09003 * 108.91864 * 334.67554 * 17 10 9 19 19 N 1.46906 * 108.92509 * 93.16717 * 17 10 9 20 20 H 0.96999 * 119.99833 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46715 * 59.99237 * 9 7 2 22 22 H 1.08999 * 109.46818 * 299.99967 * 9 7 2 23 23 H 1.09002 * 108.89744 * 39.55102 * 12 10 9 24 24 H 1.09003 * 108.89355 * 280.96232 * 12 10 9 25 25 H 1.08997 * 108.89204 * 182.73719 * 13 12 10 26 26 H 1.09002 * 108.89666 * 301.22803 * 13 12 10 27 27 H 1.09002 * 109.62642 * 39.71377 * 14 13 12 28 28 H 1.08995 * 109.62931 * 160.29548 * 14 13 12 29 29 H 1.09003 * 108.87568 * 214.93364 * 15 14 13 30 30 H 1.09003 * 108.87347 * 333.47062 * 15 14 13 31 31 H 1.09000 * 108.81295 * 79.14131 * 16 15 14 32 32 H 1.08999 * 108.81700 * 197.42260 * 16 15 14 33 33 H 1.00894 * 111.00031 * 182.90547 * 19 17 10 34 34 H 1.00901 * 110.99572 * 306.85996 * 19 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 1 2.9268 -3.5648 0.8456 12 6 3.0486 -3.6569 -1.3162 13 6 4.2888 -4.4113 -1.2102 14 6 4.0452 -5.9026 -0.9005 15 6 3.7761 -6.0470 0.5729 16 6 2.2713 -6.0276 0.9022 17 6 1.4976 -4.9651 0.0983 18 1 0.5376 -4.7862 0.5828 19 7 1.2547 -5.4779 -1.2567 20 1 -0.4850 0.8401 0.0004 21 1 0.6247 -2.5570 -0.8896 22 1 0.6241 -2.5567 0.8903 23 1 3.2840 -2.6263 -1.5821 24 1 2.4362 -4.0935 -2.1051 25 1 4.8326 -4.3304 -2.1513 26 1 4.8972 -3.9804 -0.4150 27 1 3.1842 -6.2581 -1.4665 28 1 4.9285 -6.4815 -1.1700 29 1 4.2006 -6.9898 0.9182 30 1 4.2621 -5.2272 1.1021 31 1 1.8509 -7.0091 0.6832 32 1 2.1467 -5.8235 1.9656 33 1 0.7129 -6.3286 -1.2297 34 1 0.8055 -4.7811 -1.8319 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261273303.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:40 Heat of formation + Delta-G solvation = -39.064772 kcal Electronic energy + Delta-G solvation = -13353.994176 eV Core-core repulsion = 11284.950804 eV Total energy + Delta-G solvation = -2069.043371 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.40390 -35.51573 -34.48250 -33.41586 -31.32414 -28.50966 -26.11184 -24.54178 -23.13547 -20.83242 -19.48365 -18.48497 -16.87970 -16.86386 -16.24723 -15.57981 -15.14705 -14.42668 -14.31181 -13.85101 -13.69024 -13.58154 -13.07381 -12.87455 -12.67254 -12.26385 -12.19184 -11.65104 -11.55950 -11.48823 -11.00488 -10.97832 -10.78905 -10.69481 -10.49923 -9.21484 -8.18995 -6.27203 1.37215 1.37891 1.50893 2.40522 3.14138 3.75796 3.98496 3.99716 4.20791 4.45322 4.53503 4.56367 4.59351 4.74597 4.82078 5.05342 5.11736 5.24955 5.31104 5.36149 5.41102 5.46885 5.54024 5.63603 5.68941 5.75127 5.85179 5.88598 6.03420 6.29497 6.38139 6.76930 6.88641 7.40683 8.92929 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.049679 B = 0.009903 C = 0.009129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.480607 B = 2826.803446 C = 3066.433621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.958 3.042 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.034 3.966 10 C -0.064 4.064 11 H 0.045 0.955 12 C -0.098 4.098 13 C -0.102 4.102 14 C -0.119 4.119 15 C -0.108 4.108 16 C -0.103 4.103 17 C 0.101 3.899 18 H 0.009 0.991 19 N -0.826 5.826 20 H 0.261 0.739 21 H -0.008 1.008 22 H -0.020 1.020 23 H 0.028 0.972 24 H 0.079 0.921 25 H 0.053 0.947 26 H 0.034 0.966 27 H 0.102 0.898 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.040 0.960 31 H 0.074 0.926 32 H 0.053 0.947 33 H 0.340 0.660 34 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.606 -11.779 -1.347 13.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.783 3.217 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.563 4.563 8 H 0.074 0.926 9 C -0.003 4.003 10 C -0.083 4.083 11 H 0.064 0.936 12 C -0.136 4.136 13 C -0.140 4.140 14 C -0.156 4.156 15 C -0.145 4.145 16 C -0.141 4.141 17 C -0.010 4.010 18 H 0.027 0.973 19 N -0.358 5.358 20 H 0.070 0.930 21 H 0.010 0.990 22 H -0.002 1.002 23 H 0.047 0.953 24 H 0.098 0.902 25 H 0.072 0.928 26 H 0.053 0.947 27 H 0.120 0.880 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.058 0.942 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.153 0.847 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.256 -11.739 -1.382 13.373 hybrid contribution -1.045 1.530 0.457 1.908 sum 5.211 -10.209 -0.925 11.499 Atomic orbital electron populations 1.70098 1.07636 1.27414 1.52400 1.25920 0.95716 1.03079 0.95186 0.85497 0.79123 0.79327 0.77729 1.18835 1.20379 1.20519 1.21636 0.93221 0.92214 1.49197 0.92623 1.19088 0.93923 0.93278 0.93977 1.20839 0.96664 0.92967 0.97868 0.93618 1.20256 0.97094 0.98397 0.97841 1.20357 0.96804 0.96636 1.00196 1.21478 1.02698 0.94819 0.96620 1.21223 0.95077 1.00964 0.97285 1.21896 0.95886 0.98105 0.98180 1.21045 0.96082 0.94293 0.89619 0.97350 1.59258 1.55273 1.09458 1.11761 0.92984 0.98961 1.00207 0.95344 0.90229 0.92799 0.94707 0.88009 0.92345 0.91303 0.94150 0.90737 0.92804 0.84654 0.84844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.58 13.29 21.45 0.28 -57.30 16 2 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 3 Si 0.96 45.31 29.54 68.60 2.03 47.34 16 4 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 7 C -0.52 -30.27 8.12 25.60 0.21 -30.06 16 8 H 0.06 3.15 7.26 -2.91 -0.02 3.13 16 9 C 0.03 1.83 4.27 29.85 0.13 1.96 16 10 C -0.06 -2.69 1.69 -11.17 -0.02 -2.70 16 11 H 0.05 2.00 6.96 -2.39 -0.02 1.98 16 12 C -0.10 -3.77 4.50 28.74 0.13 -3.64 16 13 C -0.10 -3.29 5.26 28.74 0.15 -3.14 16 14 C -0.12 -3.19 5.61 30.20 0.17 -3.02 16 15 C -0.11 -2.87 5.32 30.13 0.16 -2.71 16 16 C -0.10 -2.84 5.55 31.31 0.17 -2.66 16 17 C 0.10 3.41 2.95 44.48 0.13 3.54 16 18 H 0.01 0.32 7.61 -2.39 -0.02 0.30 16 19 N -0.83 -23.30 5.19 -170.47 -0.88 -24.19 16 20 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 21 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 22 H -0.02 -1.20 8.00 -2.39 -0.02 -1.22 16 23 H 0.03 1.25 6.63 -2.39 -0.02 1.24 16 24 H 0.08 2.90 5.47 -2.39 -0.01 2.88 16 25 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.03 1.16 7.47 -2.39 -0.02 1.15 16 27 H 0.10 2.76 5.57 -2.39 -0.01 2.74 16 28 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.04 1.19 6.62 -2.39 -0.02 1.18 16 31 H 0.07 1.73 8.01 -2.39 -0.02 1.71 16 32 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.34 7.71 8.93 -89.70 -0.80 6.91 16 34 H 0.34 10.40 7.86 -89.69 -0.71 9.70 16 Total: -1.00 -63.04 253.47 2.70 -60.34 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -0.42 Total: 15.89 kcal Atomic # 6 Polarization: -43.79 SS G_CDS: 1.69 Total: -42.09 kcal Atomic # 7 Polarization: -80.88 SS G_CDS: -0.60 Total: -81.48 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -63.04 2.70 -60.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261273303.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.278 kcal (2) G-P(sol) polarization free energy of solvation -63.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds