Wall clock time and date at job start Mon Mar 30 2020 02:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52997 * 109.46975 * 2 1 4 4 C 1.50698 * 109.46432 * 240.00168 * 2 1 3 5 5 H 1.07998 * 120.00366 * 234.37207 * 4 2 1 6 6 C 1.37881 * 120.00162 * 54.38155 * 4 2 1 7 7 N 1.31516 * 119.99774 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00007 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46989 * 60.00431 * 8 6 4 10 10 H 1.48504 * 109.47133 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47557 * 300.00358 * 8 6 4 12 12 C 1.53002 * 109.46895 * 120.00723 * 2 1 3 13 13 N 1.46897 * 109.47344 * 53.00649 * 12 2 1 14 14 C 1.48534 * 110.99986 * 61.34840 * 13 12 2 15 15 C 1.54942 * 103.22459 * 159.72093 * 14 13 12 16 16 C 1.54598 * 102.91909 * 322.58257 * 15 14 13 17 17 C 1.47901 * 110.99811 * 178.74576 * 13 12 2 18 18 H 1.09006 * 109.46491 * 293.32312 * 1 2 3 19 19 H 1.08995 * 109.47316 * 53.32277 * 1 2 3 20 20 H 1.08998 * 109.47179 * 173.32360 * 1 2 3 21 21 H 1.09003 * 109.46750 * 179.97438 * 3 2 1 22 22 H 1.08999 * 109.47692 * 300.00364 * 3 2 1 23 23 H 1.08995 * 109.46745 * 60.00802 * 3 2 1 24 24 H 0.97005 * 119.99810 * 179.97438 * 7 6 4 25 25 H 1.09001 * 109.46278 * 173.00753 * 12 2 1 26 26 H 1.08998 * 109.46505 * 292.99965 * 12 2 1 27 27 H 1.08997 * 110.66780 * 278.15082 * 14 13 12 28 28 H 1.08992 * 110.66868 * 41.28647 * 14 13 12 29 29 H 1.08994 * 110.72274 * 204.22744 * 15 14 13 30 30 H 1.09003 * 110.72353 * 80.93943 * 15 14 13 31 31 H 1.08996 * 110.31134 * 263.04153 * 16 15 14 32 32 H 1.09003 * 110.38844 * 140.91587 * 16 15 14 33 33 H 1.09007 * 109.91699 * 333.50570 * 17 13 12 34 34 H 1.08994 * 109.91804 * 94.60306 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.7259 -1.5326 -1.1342 6 6 1.6063 -0.3106 -2.4795 7 7 0.7614 0.6904 -2.5968 8 14 2.2294 -1.1907 -4.0048 9 1 1.8498 -2.6249 -3.9384 10 1 1.6249 -0.5747 -5.2133 11 1 3.7080 -1.0728 -4.0752 12 6 2.0400 -0.7214 1.2492 13 7 1.4176 -2.0491 1.3363 14 6 1.7737 -2.8823 0.1594 15 6 1.5059 -4.3263 0.6532 16 6 1.9656 -4.2779 2.1285 17 6 1.9106 -2.7891 2.5182 18 1 -0.3632 0.4069 0.9438 19 1 -0.3634 0.6138 -0.8241 20 1 -0.3633 -1.0207 -0.1195 21 1 3.1301 1.4424 0.0005 22 1 1.6767 1.9564 -0.8899 23 1 1.6768 1.9562 0.8900 24 1 0.4620 0.9719 -3.4755 25 1 3.1229 -0.8310 1.1887 26 1 1.7825 -0.1404 2.1347 27 1 1.1344 -2.6415 -0.6900 28 1 2.8244 -2.7530 -0.0998 29 1 2.1002 -5.0438 0.0874 30 1 0.4446 -4.5658 0.5875 31 1 2.9838 -4.6556 2.2201 32 1 1.2894 -4.8584 2.7561 33 1 2.9073 -2.4385 2.7866 34 1 1.2288 -2.6466 3.3565 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261328388.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:02 Heat of formation + Delta-G solvation = 3.533307 kcal Electronic energy + Delta-G solvation = -13599.208347 eV Core-core repulsion = 11532.012167 eV Total energy + Delta-G solvation = -2067.196180 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -38.49301 -35.26077 -31.74595 -29.84303 -28.34898 -25.42528 -25.05619 -24.22572 -20.53208 -20.16460 -18.36809 -16.09987 -15.38170 -14.71464 -14.48495 -13.63903 -13.11207 -12.61758 -12.37540 -12.05292 -11.54192 -11.27555 -11.14297 -10.90916 -10.76191 -10.65679 -10.47432 -10.35566 -10.23873 -10.03027 -9.63669 -9.35866 -8.95364 -8.42146 -8.22768 -7.46038 -5.85631 -3.92351 3.33583 3.39093 3.41298 4.47772 4.88388 5.23595 5.28602 5.39354 5.47324 5.92272 6.00171 6.20440 6.26521 6.32118 6.35579 6.38874 6.60836 6.75794 6.79340 6.92342 7.09043 7.15694 7.19320 7.35201 7.61483 7.77091 7.84629 7.85456 7.96849 8.30288 8.40293 8.58928 9.03715 9.67872 11.14629 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.034603 B = 0.014556 C = 0.011392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.991006 B = 1923.093530 C = 2457.367543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.064 3.936 3 C -0.126 4.126 4 C -0.507 4.507 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.885 5.885 8 Si 0.882 3.118 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.280 1.280 12 C 0.065 3.935 13 N -0.505 5.505 14 C 0.052 3.948 15 C -0.136 4.136 16 C -0.128 4.128 17 C 0.031 3.969 18 H -0.002 1.002 19 H 0.079 0.921 20 H 0.035 0.965 21 H 0.022 0.978 22 H 0.074 0.926 23 H 0.008 0.992 24 H 0.257 0.743 25 H 0.016 0.984 26 H 0.045 0.955 27 H 0.109 0.891 28 H 0.042 0.958 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.032 0.968 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.700 -5.791 5.763 8.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.064 3.936 3 C -0.184 4.184 4 C -0.545 4.545 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.710 3.290 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.206 1.206 12 C -0.063 4.063 13 N -0.228 5.228 14 C -0.075 4.075 15 C -0.174 4.174 16 C -0.166 4.166 17 C -0.097 4.097 18 H 0.017 0.983 19 H 0.097 0.903 20 H 0.054 0.946 21 H 0.041 0.959 22 H 0.093 0.907 23 H 0.027 0.973 24 H 0.067 0.933 25 H 0.034 0.966 26 H 0.064 0.936 27 H 0.127 0.873 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.050 0.950 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.040 -5.582 5.650 8.011 hybrid contribution 1.341 -0.538 -0.827 1.665 sum 2.381 -6.120 4.824 8.148 Atomic orbital electron populations 1.21656 0.96925 1.00524 0.98152 1.18135 0.93586 0.91328 0.90574 1.21750 0.98012 0.98880 0.99762 1.21449 1.26216 1.16397 0.90484 0.91885 1.24884 0.95185 0.95066 0.98500 1.69850 1.32555 1.27035 1.22950 0.86830 0.78974 0.80074 0.83123 1.20287 1.21472 1.20606 1.22400 0.94803 0.89458 0.99607 1.64727 1.54556 1.02458 1.01108 1.23670 0.99965 0.88692 0.95146 1.22693 1.01044 0.98772 0.94930 1.22355 1.00380 0.96452 0.97455 1.22859 0.97912 0.93225 0.95735 0.98305 0.90261 0.94576 0.95898 0.90667 0.97255 0.93280 0.96594 0.93621 0.87345 0.93948 0.92167 0.91481 0.92480 0.92020 0.95009 0.91582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.86 7.68 37.16 0.29 -2.58 16 2 C 0.06 1.57 0.52 -155.66 -0.08 1.49 16 3 C -0.13 -3.03 8.30 37.16 0.31 -2.72 16 4 C -0.51 -13.17 5.36 -34.44 -0.18 -13.35 16 5 H 0.06 1.62 4.77 -52.49 -0.25 1.37 16 6 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.88 -24.39 9.46 55.43 0.52 -23.87 16 8 Si 0.88 20.84 29.54 -169.99 -5.02 15.82 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 C 0.07 1.42 3.95 -3.82 -0.02 1.41 16 13 N -0.50 -10.28 4.42 -230.46 -1.02 -11.30 16 14 C 0.05 1.06 4.37 -1.89 -0.01 1.05 16 15 C -0.14 -2.23 7.06 -24.87 -0.18 -2.40 16 16 C -0.13 -1.89 6.93 -25.37 -0.18 -2.07 16 17 C 0.03 0.53 6.70 -2.76 -0.02 0.51 16 18 H 0.00 -0.05 8.14 -51.93 -0.42 -0.47 16 19 H 0.08 2.14 5.91 -51.93 -0.31 1.83 16 20 H 0.04 0.91 7.11 -51.93 -0.37 0.54 16 21 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.07 1.97 6.53 -51.93 -0.34 1.63 16 23 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 24 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 25 H 0.02 0.35 7.99 -51.93 -0.42 -0.06 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.11 2.50 6.01 -51.93 -0.31 2.19 16 28 H 0.04 0.90 6.32 -51.93 -0.33 0.57 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.03 0.53 7.71 -51.93 -0.40 0.12 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 254.71 15.07 3.84 3.84 Total: -1.00 -26.70 254.71 -7.50 -34.20 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -5.66 Total: -1.65 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: -0.16 Total: -17.04 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: -0.49 Total: -35.16 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -26.70 -7.50 -34.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261328388.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.729 kcal (2) G-P(sol) polarization free energy of solvation -26.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds