Wall clock time and date at job start Mon Mar 30 2020 02:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47192 * 2 1 4 4 C 1.53010 * 109.46976 * 180.02562 * 3 2 1 5 5 H 1.09000 * 115.56263 * 29.31050 * 4 3 2 6 6 C 1.53080 * 117.51133 * 243.60555 * 4 3 2 7 7 C 1.53000 * 117.49670 * 174.99866 * 4 3 2 8 8 H 1.08997 * 117.50221 * 215.00143 * 7 4 3 9 9 N 1.46905 * 117.50002 * 0.02562 * 7 4 3 10 10 C 1.46901 * 110.99870 * 204.91391 * 9 7 4 11 11 H 1.09000 * 109.47473 * 34.99539 * 10 9 7 12 12 C 1.53003 * 109.47021 * 274.99736 * 10 9 7 13 13 C 1.50693 * 109.47182 * 155.00014 * 10 9 7 14 14 H 1.08005 * 119.99854 * 359.97438 * 13 10 9 15 15 C 1.37878 * 120.00083 * 179.97438 * 13 10 9 16 16 N 1.31511 * 119.99935 * 0.02562 * 15 13 10 17 17 Si 1.86802 * 119.99899 * 180.02562 * 15 13 10 18 18 H 1.48508 * 109.47177 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47276 * 120.00245 * 17 15 13 20 20 H 1.48507 * 109.47088 * 240.00288 * 17 15 13 21 21 H 1.08991 * 109.47165 * 59.99904 * 1 2 3 22 22 H 1.09001 * 109.46920 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46828 * 300.00053 * 1 2 3 24 24 H 1.09004 * 109.47291 * 239.99687 * 2 1 3 25 25 H 1.09003 * 109.47211 * 120.00527 * 2 1 3 26 26 H 1.08993 * 109.47375 * 60.00169 * 3 2 1 27 27 H 1.09000 * 109.47442 * 299.99594 * 3 2 1 28 28 H 1.08996 * 117.48938 * 145.04114 * 6 4 3 29 29 H 1.09000 * 117.53249 * 359.97438 * 6 4 3 30 30 H 1.00901 * 110.99869 * 80.96102 * 9 7 4 31 31 H 1.08996 * 109.47234 * 300.00507 * 12 10 9 32 32 H 1.09007 * 109.47106 * 60.00477 * 12 10 9 33 33 H 1.08993 * 109.47190 * 180.02562 * 12 10 9 34 34 H 0.97003 * 119.99872 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 4.0402 0.5850 -0.4823 6 6 4.2777 2.0457 1.2153 7 6 4.2765 2.7944 -0.1191 8 1 5.2111 2.8266 -0.6789 9 7 3.4338 3.9932 -0.2228 10 6 4.1502 5.0834 -0.8984 11 1 4.7984 4.6687 -1.6703 12 6 4.9966 5.8468 0.1223 13 6 3.1554 6.0231 -1.5293 14 1 2.0967 5.8296 -1.4379 15 6 3.5966 7.1299 -2.2231 16 7 4.8856 7.3652 -2.3347 17 14 2.3633 8.2951 -3.0045 18 1 0.9854 7.8101 -2.7367 19 1 2.5313 9.6532 -2.4279 20 1 2.5926 8.3481 -4.4708 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.6767 1.9563 0.8899 27 1 1.6767 1.9563 -0.8900 28 1 5.2131 1.5850 1.5329 29 1 3.6536 2.4431 2.0157 30 1 3.1059 4.2845 0.6859 31 1 4.3484 6.2615 0.8943 32 1 5.7163 5.1671 0.5786 33 1 5.5278 6.6560 -0.3788 34 1 5.1960 8.1436 -2.8232 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300357721.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:55 Heat of formation + Delta-G solvation = 1.671745 kcal Electronic energy + Delta-G solvation = -12571.176474 eV Core-core repulsion = 10503.899570 eV Total energy + Delta-G solvation = -2067.276903 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -37.98705 -34.93245 -33.45581 -31.48770 -27.55126 -26.67363 -25.08173 -21.69203 -21.06114 -20.48940 -19.23633 -16.29197 -15.36981 -14.80317 -14.53426 -14.25303 -13.18912 -12.89878 -12.70951 -12.37481 -12.08627 -11.74077 -11.47139 -11.10548 -10.94678 -10.86160 -10.67857 -10.57932 -10.50326 -10.14030 -9.97131 -9.79831 -9.35323 -8.83279 -8.34861 -7.08480 -5.97140 -4.00143 3.32773 3.40392 3.45886 4.35057 4.45376 5.00073 5.10010 5.24401 5.34690 5.38288 5.45741 5.60734 5.84199 5.86617 6.01251 6.06118 6.18116 6.22163 6.26131 6.45109 6.49616 6.64595 6.73093 6.87174 6.89535 7.12592 7.39953 7.76345 7.91881 8.30324 8.54945 8.64074 9.07428 9.65142 11.10092 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.037931 B = 0.008203 C = 0.007009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.000222 B = 3412.750925 C = 3993.934326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.075 4.075 4 C -0.152 4.152 5 H 0.093 0.907 6 C -0.216 4.216 7 C 0.045 3.955 8 H 0.099 0.901 9 N -0.648 5.648 10 C 0.212 3.788 11 H 0.035 0.965 12 C -0.168 4.168 13 C -0.494 4.494 14 H 0.063 0.937 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.897 3.103 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.285 1.285 21 H 0.055 0.945 22 H 0.047 0.953 23 H 0.051 0.949 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.327 0.673 31 H 0.027 0.973 32 H 0.006 0.994 33 H 0.088 0.912 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.320 -10.324 5.057 11.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.113 4.113 4 C -0.172 4.172 5 H 0.111 0.889 6 C -0.255 4.255 7 C -0.067 4.067 8 H 0.117 0.883 9 N -0.276 5.276 10 C 0.104 3.896 11 H 0.052 0.948 12 C -0.227 4.227 13 C -0.533 4.533 14 H 0.081 0.919 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.725 3.275 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.211 1.211 21 H 0.074 0.926 22 H 0.066 0.934 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.101 0.899 29 H 0.106 0.894 30 H 0.146 0.854 31 H 0.046 0.954 32 H 0.025 0.975 33 H 0.107 0.893 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.534 -10.365 4.382 11.795 hybrid contribution 0.172 0.921 0.328 0.992 sum -3.363 -9.444 4.710 11.076 Atomic orbital electron populations 1.21770 0.96369 1.00849 1.01917 1.21550 0.95342 0.97857 1.01232 1.20951 0.92494 0.95089 1.02718 1.22575 0.95270 0.97731 1.01638 0.88863 1.23537 1.02127 1.07195 0.92635 1.22572 0.96625 0.90396 0.97094 0.88337 1.60465 1.37789 1.05314 1.24031 1.19265 0.92050 0.86832 0.91448 0.94753 1.22453 0.99313 1.01972 0.99006 1.21195 0.93466 1.06819 1.31832 0.91896 1.24949 0.95249 0.97850 0.96528 1.69896 1.12862 1.28450 1.42560 0.86458 0.81569 0.80558 0.78907 1.19735 1.21217 1.21145 0.92628 0.93404 0.92950 0.92483 0.92701 0.92448 0.90684 0.89948 0.89366 0.85421 0.95427 0.97493 0.89341 0.93143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.91 37.16 0.37 -1.33 16 2 C -0.12 -1.51 5.89 -26.74 -0.16 -1.66 16 3 C -0.07 -1.12 4.95 -26.73 -0.13 -1.25 16 4 C -0.15 -2.38 5.74 -90.57 -0.52 -2.90 16 5 H 0.09 1.35 8.07 -51.93 -0.42 0.93 16 6 C -0.22 -3.31 9.88 -26.69 -0.26 -3.57 16 7 C 0.05 0.84 6.07 -67.71 -0.41 0.43 16 8 H 0.10 1.90 7.60 -51.93 -0.39 1.50 16 9 N -0.65 -13.88 5.88 -100.95 -0.59 -14.48 16 10 C 0.21 5.36 2.53 -68.87 -0.17 5.19 16 11 H 0.03 0.96 7.57 -51.93 -0.39 0.57 16 12 C -0.17 -4.08 8.94 37.16 0.33 -3.75 16 13 C -0.49 -13.79 8.84 -34.44 -0.30 -14.09 16 14 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 15 C 0.05 1.53 5.30 -17.82 -0.09 1.43 16 16 N -0.90 -25.88 11.32 55.43 0.63 -25.25 16 17 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 18 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.87 7.88 -51.93 -0.41 0.46 16 27 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.09 1.32 7.98 -51.93 -0.41 0.91 16 30 H 0.33 6.73 8.25 -39.29 -0.32 6.41 16 31 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 32 H 0.01 0.14 8.07 -51.92 -0.42 -0.28 16 33 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 34 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 278.86 15.07 4.20 4.20 Total: -1.00 -27.90 278.86 -8.16 -36.06 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -6.02 Total: 4.36 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: -1.36 Total: -21.52 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.03 Total: -39.73 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -27.90 -8.16 -36.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300357721.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.729 kcal (2) G-P(sol) polarization free energy of solvation -27.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds