Wall clock time and date at job start Mon Mar 30 2020 01:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.57755 * 2 1 4 4 C 1.54166 * 110.52350 * 237.30039 * 2 1 3 5 5 N 1.47246 * 103.26872 * 241.13324 * 4 2 1 6 6 C 1.36785 * 108.37298 * 0.38444 * 5 4 2 7 7 N 1.37476 * 122.87431 * 179.83710 * 6 5 4 8 8 C 1.46507 * 119.99614 * 359.73087 * 7 6 5 9 9 C 1.46497 * 120.00308 * 179.73248 * 7 6 5 10 10 C 1.50694 * 109.47115 * 270.00117 * 9 7 6 11 11 H 1.08000 * 120.00563 * 359.97438 * 10 9 7 12 12 C 1.37885 * 119.99902 * 180.02562 * 10 9 7 13 13 N 1.31516 * 119.99913 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46985 * 179.97438 * 14 12 10 16 16 H 1.48494 * 109.47276 * 299.99832 * 14 12 10 17 17 H 1.48498 * 109.47150 * 60.00043 * 14 12 10 18 18 N 1.29311 * 114.25697 * 359.56792 * 6 5 4 19 19 H 1.08997 * 109.47123 * 298.74021 * 1 2 3 20 20 H 1.08993 * 109.47354 * 58.74596 * 1 2 3 21 21 H 1.09002 * 109.47087 * 178.74370 * 1 2 3 22 22 H 1.08998 * 110.65906 * 359.80808 * 4 2 1 23 23 H 1.09000 * 110.66633 * 122.75561 * 4 2 1 24 24 H 0.97006 * 125.81443 * 180.22145 * 5 4 2 25 25 H 1.09000 * 109.47436 * 269.99793 * 8 7 6 26 26 H 1.09000 * 109.47148 * 30.00662 * 8 7 6 27 27 H 1.09004 * 109.46943 * 149.99917 * 8 7 6 28 28 H 1.09007 * 109.47078 * 149.99755 * 9 7 6 29 29 H 1.09003 * 109.46733 * 30.00478 * 9 7 6 30 30 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9131 1.0205 0.0000 4 6 2.0705 -0.7800 -1.2150 5 7 2.8369 -1.8761 -0.5992 6 6 2.7460 -1.7551 0.7603 7 7 3.3524 -2.6306 1.6296 8 6 4.1329 -3.7563 1.1098 9 6 3.2183 -2.4380 3.0756 10 6 4.3400 -1.5625 3.5719 11 1 5.0791 -1.1874 2.8796 12 6 4.4232 -1.2412 4.9102 13 7 3.5234 -1.6983 5.7535 14 14 5.8140 -0.1565 5.5255 15 1 5.6779 0.0388 6.9914 16 1 7.1161 -0.8067 5.2311 17 1 5.7531 1.1611 4.8433 18 7 2.0452 -0.7437 1.1579 19 1 -0.3633 0.4941 0.9010 20 1 -0.3634 0.5331 -0.8785 21 1 -0.3633 -1.0274 -0.0225 22 1 1.2501 -1.1706 -1.8171 23 1 2.7221 -0.1484 -1.8187 24 1 3.3217 -2.5677 -1.0763 25 1 3.4819 -4.6209 0.9806 26 1 4.5692 -3.4830 0.1490 27 1 4.9284 -4.0023 1.8132 28 1 3.2631 -3.4050 3.5767 29 1 2.2622 -1.9610 3.2914 30 1 3.5822 -1.4725 6.6950 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306188354.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:17 Heat of formation + Delta-G solvation = 45.049099 kcal Electronic energy + Delta-G solvation = -12694.834169 eV Core-core repulsion = 10525.897905 eV Total energy + Delta-G solvation = -2168.936264 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.122 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.45986 -35.64586 -32.59463 -31.57852 -30.00191 -27.66782 -25.82125 -24.76835 -22.30071 -20.47826 -18.65856 -17.19510 -16.29565 -15.22591 -14.71522 -14.06986 -13.89558 -13.60962 -12.85675 -12.76157 -12.06926 -11.88533 -11.55494 -11.28390 -11.18295 -11.05517 -10.74217 -10.72338 -10.45227 -9.98125 -9.45739 -8.66220 -8.29524 -7.81331 -6.75624 -5.89892 -3.94458 3.38835 3.42967 3.45630 3.59151 3.79395 4.44661 4.56834 5.03593 5.42113 5.45110 5.58481 5.67891 5.76690 5.90744 5.99504 6.06963 6.23607 6.37339 6.54160 6.70299 6.92633 7.05932 7.55456 7.91766 7.94573 8.12484 8.40432 8.86871 9.06351 9.29289 9.69208 11.16236 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.039302 B = 0.010304 C = 0.009346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.269626 B = 2716.674059 C = 2995.343977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.067 3.933 3 H 0.074 0.926 4 C 0.094 3.906 5 N -0.779 5.779 6 C 0.605 3.395 7 N -0.602 5.602 8 C 0.103 3.897 9 C 0.268 3.732 10 C -0.517 4.517 11 H 0.054 0.946 12 C 0.060 3.940 13 N -0.897 5.897 14 Si 0.895 3.105 15 H -0.288 1.288 16 H -0.279 1.279 17 H -0.277 1.277 18 N -0.616 5.616 19 H 0.061 0.939 20 H 0.048 0.952 21 H 0.048 0.952 22 H 0.062 0.938 23 H 0.059 0.941 24 H 0.400 0.600 25 H 0.036 0.964 26 H 0.044 0.956 27 H 0.074 0.926 28 H 0.026 0.974 29 H 0.049 0.951 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.641 -1.314 -12.354 12.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.046 4.046 3 H 0.092 0.908 4 C -0.033 4.033 5 N -0.429 5.429 6 C 0.242 3.758 7 N -0.323 5.323 8 C -0.041 4.041 9 C 0.149 3.851 10 C -0.557 4.557 11 H 0.072 0.928 12 C -0.141 4.141 13 N -0.537 5.537 14 Si 0.723 3.277 15 H -0.213 1.213 16 H -0.205 1.205 17 H -0.203 1.203 18 N -0.360 5.360 19 H 0.080 0.920 20 H 0.067 0.933 21 H 0.067 0.933 22 H 0.080 0.920 23 H 0.077 0.923 24 H 0.237 0.763 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.092 0.908 28 H 0.044 0.956 29 H 0.067 0.933 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.011 -0.863 -11.301 11.511 hybrid contribution 1.260 0.090 -0.721 1.455 sum -0.750 -0.773 -12.022 12.070 Atomic orbital electron populations 1.21790 0.94970 1.01237 1.01076 1.22325 0.95305 0.98429 0.88520 0.90769 1.22455 0.94878 0.89233 0.96744 1.45917 1.59270 1.33060 1.04684 1.19668 0.88477 0.88507 0.79151 1.46147 1.53297 1.26077 1.06810 1.21407 0.95465 0.88611 0.98662 1.19187 0.98424 0.96384 0.71098 1.21456 1.10811 1.30578 0.92837 0.92815 1.24903 0.96298 0.96202 0.96719 1.69926 1.34789 1.45567 1.03415 0.86611 0.82322 0.81248 0.77477 1.21320 1.20517 1.20313 1.74848 1.27492 1.11190 1.22439 0.91982 0.93307 0.93315 0.92018 0.92270 0.76257 0.94528 0.93688 0.90773 0.95572 0.93290 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 9.41 37.16 0.35 -1.67 16 2 C 0.07 1.18 4.37 -67.08 -0.29 0.89 16 3 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 4 C 0.09 1.37 7.75 -3.03 -0.02 1.35 16 5 N -0.78 -12.87 6.24 -61.09 -0.38 -13.25 16 6 C 0.60 12.96 8.17 -322.34 -2.63 10.32 16 7 N -0.60 -13.38 2.93 -185.22 -0.54 -13.93 16 8 C 0.10 1.76 10.42 59.85 0.62 2.38 16 9 C 0.27 7.19 5.23 -5.20 -0.03 7.16 16 10 C -0.52 -14.98 9.39 -34.44 -0.32 -15.30 16 11 H 0.05 1.58 7.81 -52.49 -0.41 1.16 16 12 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 13 N -0.90 -27.12 13.29 55.43 0.74 -26.39 16 14 Si 0.90 22.37 29.54 -169.99 -5.02 17.35 16 15 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 17 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 18 N -0.62 -14.27 10.28 -54.82 -0.56 -14.84 16 19 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 20 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 21 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.06 0.78 7.74 -51.93 -0.40 0.37 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.40 5.45 7.52 -40.82 -0.31 5.14 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.04 0.64 6.75 -51.93 -0.35 0.29 16 27 H 0.07 1.29 8.07 -51.93 -0.42 0.87 16 28 H 0.03 0.72 8.07 -51.92 -0.42 0.30 16 29 H 0.05 1.46 7.50 -51.93 -0.39 1.07 16 30 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 254.42 15.07 3.83 3.83 Total: -1.00 -32.52 254.42 -8.73 -41.25 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -4.37 Total: -0.83 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: -2.43 Total: 6.78 kcal Atomic # 7 Polarization: -67.64 SS G_CDS: -0.75 Total: -68.40 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -32.52 -8.73 -41.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306188354.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.303 kcal (2) G-P(sol) polarization free energy of solvation -32.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds