Wall clock time and date at job start Mon Mar 30 2020 01:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.57755 * 2 1 4 4 C 1.54166 * 110.52350 * 237.30039 * 2 1 3 5 5 N 1.47246 * 103.26872 * 241.13324 * 4 2 1 6 6 C 1.36785 * 108.37298 * 0.38444 * 5 4 2 7 7 N 1.37476 * 122.87431 * 179.83710 * 6 5 4 8 8 C 1.46507 * 119.99614 * 359.73087 * 7 6 5 9 9 C 1.46497 * 120.00308 * 179.73248 * 7 6 5 10 10 C 1.50694 * 109.47115 * 270.00117 * 9 7 6 11 11 H 1.08000 * 120.00563 * 359.97438 * 10 9 7 12 12 C 1.37885 * 119.99902 * 180.02562 * 10 9 7 13 13 N 1.31516 * 119.99913 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46985 * 179.97438 * 14 12 10 16 16 H 1.48494 * 109.47276 * 299.99832 * 14 12 10 17 17 H 1.48498 * 109.47150 * 60.00043 * 14 12 10 18 18 N 1.29311 * 114.25697 * 359.56792 * 6 5 4 19 19 H 1.08997 * 109.47123 * 298.74021 * 1 2 3 20 20 H 1.08993 * 109.47354 * 58.74596 * 1 2 3 21 21 H 1.09002 * 109.47087 * 178.74370 * 1 2 3 22 22 H 1.08998 * 110.65906 * 359.80808 * 4 2 1 23 23 H 1.09000 * 110.66633 * 122.75561 * 4 2 1 24 24 H 0.97006 * 125.81443 * 180.22145 * 5 4 2 25 25 H 1.09000 * 109.47436 * 269.99793 * 8 7 6 26 26 H 1.09000 * 109.47148 * 30.00662 * 8 7 6 27 27 H 1.09004 * 109.46943 * 149.99917 * 8 7 6 28 28 H 1.09007 * 109.47078 * 149.99755 * 9 7 6 29 29 H 1.09003 * 109.46733 * 30.00478 * 9 7 6 30 30 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9131 1.0205 0.0000 4 6 2.0705 -0.7800 -1.2150 5 7 2.8369 -1.8761 -0.5992 6 6 2.7460 -1.7551 0.7603 7 7 3.3524 -2.6306 1.6296 8 6 4.1329 -3.7563 1.1098 9 6 3.2183 -2.4380 3.0756 10 6 4.3400 -1.5625 3.5719 11 1 5.0791 -1.1874 2.8796 12 6 4.4232 -1.2412 4.9102 13 7 3.5234 -1.6983 5.7535 14 14 5.8140 -0.1565 5.5255 15 1 5.6779 0.0388 6.9914 16 1 7.1161 -0.8067 5.2311 17 1 5.7531 1.1611 4.8433 18 7 2.0452 -0.7437 1.1579 19 1 -0.3633 0.4941 0.9010 20 1 -0.3634 0.5331 -0.8785 21 1 -0.3633 -1.0274 -0.0225 22 1 1.2501 -1.1706 -1.8171 23 1 2.7221 -0.1484 -1.8187 24 1 3.3217 -2.5677 -1.0763 25 1 3.4819 -4.6209 0.9806 26 1 4.5692 -3.4830 0.1490 27 1 4.9284 -4.0023 1.8132 28 1 3.2631 -3.4050 3.5767 29 1 2.2622 -1.9610 3.2914 30 1 3.5822 -1.4725 6.6950 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306188354.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:17 Heat of formation + Delta-G solvation = 23.089300 kcal Electronic energy + Delta-G solvation = -12695.786417 eV Core-core repulsion = 10525.897905 eV Total energy + Delta-G solvation = -2169.888512 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.122 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.91584 -37.31471 -34.68754 -33.04684 -31.44798 -29.63964 -27.16031 -26.43337 -24.24399 -21.82698 -20.22242 -18.75255 -18.45668 -16.76769 -16.49200 -15.67574 -15.42994 -15.17892 -14.38811 -14.07652 -13.92021 -13.35461 -13.11074 -13.01248 -12.76434 -12.56455 -12.47129 -12.40975 -12.12688 -11.96103 -11.55481 -10.56779 -10.15254 -9.29715 -8.46416 -8.05753 -6.25530 1.38679 1.42992 1.50047 2.06589 2.23318 2.45060 3.11256 3.16832 3.75352 4.22764 4.30465 4.44115 4.62028 4.67517 4.69139 4.86746 4.88201 5.04780 5.09065 5.20717 5.35817 5.44427 5.61817 5.76994 6.13145 6.24955 6.40749 6.84178 7.37596 7.43677 7.76024 8.93406 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.039302 B = 0.010304 C = 0.009346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.269626 B = 2716.674059 C = 2995.343977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.053 3.947 3 H 0.069 0.931 4 C 0.100 3.900 5 N -0.765 5.765 6 C 0.595 3.405 7 N -0.616 5.616 8 C 0.101 3.899 9 C 0.288 3.712 10 C -0.530 4.530 11 H 0.046 0.954 12 C 0.008 3.992 13 N -0.930 5.930 14 Si 0.963 3.037 15 H -0.279 1.279 16 H -0.265 1.265 17 H -0.279 1.279 18 N -0.679 5.679 19 H 0.041 0.959 20 H 0.087 0.913 21 H 0.040 0.960 22 H 0.091 0.909 23 H 0.083 0.917 24 H 0.416 0.584 25 H 0.058 0.942 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.013 0.987 29 H 0.008 0.992 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.814 -1.140 -14.241 14.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.058 4.058 3 H 0.087 0.913 4 C -0.025 4.025 5 N -0.416 5.416 6 C 0.232 3.768 7 N -0.338 5.338 8 C -0.042 4.042 9 C 0.166 3.834 10 C -0.569 4.569 11 H 0.064 0.936 12 C -0.191 4.191 13 N -0.570 5.570 14 Si 0.788 3.212 15 H -0.204 1.204 16 H -0.189 1.189 17 H -0.205 1.205 18 N -0.425 5.425 19 H 0.060 0.940 20 H 0.106 0.894 21 H 0.059 0.941 22 H 0.109 0.891 23 H 0.102 0.898 24 H 0.256 0.744 25 H 0.076 0.924 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.031 0.969 29 H 0.026 0.974 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.172 -0.712 -13.252 13.323 hybrid contribution 0.946 0.044 -0.181 0.965 sum -0.226 -0.668 -13.432 13.451 Atomic orbital electron populations 1.21722 0.93421 1.01058 1.01937 1.22499 0.96672 0.98105 0.88560 0.91268 1.22592 0.95910 0.88552 0.95495 1.45806 1.59197 1.33820 1.02777 1.19681 0.88186 0.88119 0.80863 1.46024 1.54567 1.27836 1.05383 1.21616 0.95243 0.87755 0.99609 1.18574 0.95790 0.94736 0.74265 1.21677 1.11121 1.30991 0.93104 0.93604 1.25778 0.98860 0.97513 0.96933 1.70047 1.36494 1.46693 1.03764 0.85543 0.79580 0.78982 0.77082 1.20433 1.18937 1.20513 1.74744 1.28663 1.12724 1.26342 0.93989 0.89404 0.94061 0.89092 0.89839 0.74378 0.92370 0.90529 0.91645 0.96895 0.97399 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.62 9.41 71.98 0.68 -2.94 16 2 C 0.05 1.84 4.37 45.30 0.20 2.04 16 3 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 4 C 0.10 2.61 7.75 86.63 0.67 3.28 16 5 N -0.76 -23.27 6.24 -347.20 -2.17 -25.44 16 6 C 0.59 25.18 8.17 261.32 2.14 27.32 16 7 N -0.62 -27.45 2.93 -739.90 -2.17 -29.61 16 8 C 0.10 3.28 10.42 127.77 1.33 4.61 16 9 C 0.29 15.96 5.23 85.63 0.45 16.40 16 10 C -0.53 -31.24 9.39 25.60 0.24 -31.00 16 11 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 12 C 0.01 0.44 5.46 84.66 0.46 0.90 16 13 N -0.93 -57.30 13.29 21.45 0.28 -57.02 16 14 Si 0.96 46.09 29.54 68.60 2.03 48.12 16 15 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 16 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 17 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 18 N -0.68 -31.88 10.28 -327.35 -3.37 -35.24 16 19 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 20 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 21 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 22 H 0.09 1.88 7.74 -2.39 -0.02 1.86 16 23 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.42 9.87 7.52 -92.70 -0.70 9.17 16 25 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.08 1.97 6.75 -2.39 -0.02 1.96 16 27 H 0.06 2.22 8.07 -2.38 -0.02 2.20 16 28 H 0.01 0.74 8.07 -2.38 -0.02 0.72 16 29 H 0.01 0.50 7.50 -2.39 -0.02 0.48 16 30 H 0.26 15.37 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -72.04 254.42 1.20 -70.84 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: 0.42 Total: 7.74 kcal Atomic # 6 Polarization: 14.45 SS G_CDS: 6.16 Total: 20.61 kcal Atomic # 7 Polarization: -139.89 SS G_CDS: -7.42 Total: -147.31 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -72.04 1.20 -70.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306188354.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.929 kcal (2) G-P(sol) polarization free energy of solvation -72.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds