Wall clock time and date at job start Mon Mar 30 2020 01:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47313 * 2 1 4 4 N 1.46506 * 109.46897 * 305.11931 * 3 2 1 5 5 C 1.36935 * 120.00016 * 298.28628 * 4 3 2 6 6 H 1.08001 * 120.00367 * 354.49642 * 5 4 3 7 7 C 1.38811 * 120.00044 * 174.76848 * 5 4 3 8 8 N 1.31624 * 119.99714 * 359.72767 * 7 5 4 9 9 Si 1.86799 * 120.00027 * 179.72502 * 7 5 4 10 10 H 1.48499 * 109.47164 * 90.00247 * 9 7 5 11 11 H 1.48509 * 109.46801 * 209.99936 * 9 7 5 12 12 H 1.48494 * 109.47275 * 329.99936 * 9 7 5 13 13 C 1.52992 * 109.47318 * 65.12189 * 3 2 1 14 14 C 1.52999 * 109.47318 * 179.97438 * 13 3 2 15 15 C 1.53001 * 109.47175 * 299.99873 * 14 13 3 16 16 C 1.53006 * 109.46902 * 59.99934 * 15 14 13 17 17 C 1.53000 * 109.46846 * 185.12251 * 3 2 1 18 18 H 1.09001 * 109.46837 * 54.81245 * 1 2 3 19 19 H 1.08995 * 109.47557 * 174.81180 * 1 2 3 20 20 H 1.09006 * 109.46960 * 294.81961 * 1 2 3 21 21 H 1.08994 * 109.47063 * 239.99405 * 2 1 3 22 22 H 1.09005 * 109.46489 * 119.99514 * 2 1 3 23 23 H 0.96994 * 119.99698 * 118.28569 * 4 3 2 24 24 H 0.97001 * 119.99876 * 179.97438 * 8 7 5 25 25 H 1.09004 * 109.47515 * 299.99883 * 13 3 2 26 26 H 1.08995 * 109.47344 * 60.00067 * 13 3 2 27 27 H 1.08995 * 109.47550 * 179.97438 * 14 13 3 28 28 H 1.09009 * 109.46898 * 59.99670 * 14 13 3 29 29 H 1.08995 * 109.47107 * 300.00279 * 15 14 13 30 30 H 1.09002 * 109.47370 * 179.97438 * 15 14 13 31 31 H 1.08999 * 109.46831 * 180.02562 * 16 15 14 32 32 H 1.09003 * 109.47220 * 59.99661 * 16 15 14 33 33 H 1.08995 * 109.47153 * 299.99528 * 17 3 2 34 34 H 1.09000 * 109.47300 * 60.00035 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 1.4537 2.1677 -1.1298 5 6 1.7067 1.7583 -2.4118 6 1 2.4080 0.9576 -2.5945 7 6 1.0662 2.3763 -3.4770 8 7 0.2115 3.3522 -3.2544 9 14 1.4171 1.8230 -5.2263 10 1 0.4686 0.7446 -5.6041 11 1 1.2532 2.9730 -6.1515 12 1 2.8085 1.3116 -5.3139 13 6 1.6380 2.1256 1.3086 14 6 2.1486 3.5679 1.3088 15 6 3.6732 3.5692 1.1804 16 6 4.0753 2.8860 -0.1283 17 6 3.5646 1.4443 -0.1288 18 1 -0.3633 0.5922 -0.8399 19 1 -0.3634 -1.0234 -0.0929 20 1 -0.3633 0.4314 0.9328 21 1 1.8933 -0.5139 -0.8899 22 1 1.8933 -0.5138 0.8901 23 1 0.8862 2.9379 -0.9697 24 1 -0.2359 3.7843 -3.9987 25 1 0.5518 2.1243 1.4004 26 1 2.0743 1.5860 2.1491 27 1 1.8618 4.0547 2.2409 28 1 1.7127 4.1078 0.4681 29 1 4.1091 3.0293 2.0209 30 1 4.0370 4.5967 1.1801 31 1 5.1615 2.8866 -0.2196 32 1 3.6393 3.4259 -0.9689 33 1 4.0009 0.9047 0.7118 34 1 3.8511 0.9576 -1.0611 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306662281.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:45 Heat of formation + Delta-G solvation = -32.446564 kcal Electronic energy + Delta-G solvation = -13628.468250 eV Core-core repulsion = 11559.711865 eV Total energy + Delta-G solvation = -2068.756384 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.23388 -35.59616 -34.16091 -31.70600 -31.22851 -29.25537 -25.65428 -24.55363 -23.17922 -21.26119 -19.70481 -18.88382 -16.67425 -16.20964 -15.75459 -15.30281 -15.08480 -14.52442 -14.22051 -13.99183 -13.37977 -13.16692 -12.85469 -12.83914 -12.53113 -12.29966 -12.09294 -12.00400 -11.82071 -11.69870 -11.51496 -11.14407 -11.06669 -10.57175 -10.52407 -8.80199 -7.83152 -5.06202 1.46753 1.47273 1.54588 2.62173 3.50489 3.90072 3.98209 4.11147 4.23382 4.43244 4.48487 4.63358 4.71232 4.75934 4.84972 4.91532 4.97969 5.00668 5.11517 5.16625 5.24827 5.28962 5.40503 5.49925 5.56858 5.61645 5.66059 5.73725 5.80678 5.82706 6.41207 7.46903 8.28362 8.50826 9.40991 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.034572 B = 0.013507 C = 0.011956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.719636 B = 2072.548365 C = 2341.308863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.122 4.122 3 C 0.190 3.810 4 N -0.715 5.715 5 C -0.201 4.201 6 H 0.067 0.933 7 C -0.080 4.080 8 N -0.972 5.972 9 Si 0.954 3.046 10 H -0.294 1.294 11 H -0.302 1.302 12 H -0.274 1.274 13 C -0.109 4.109 14 C -0.115 4.115 15 C -0.106 4.106 16 C -0.110 4.110 17 C -0.115 4.115 18 H 0.034 0.966 19 H 0.047 0.953 20 H 0.055 0.945 21 H 0.036 0.964 22 H 0.072 0.928 23 H 0.370 0.630 24 H 0.244 0.756 25 H 0.054 0.946 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.036 0.964 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.036 0.964 33 H 0.071 0.929 34 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.435 -3.403 10.558 12.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.161 4.161 3 C 0.100 3.900 4 N -0.354 5.354 5 C -0.333 4.333 6 H 0.085 0.915 7 C -0.271 4.271 8 N -0.624 5.624 9 Si 0.785 3.215 10 H -0.221 1.221 11 H -0.229 1.229 12 H -0.200 1.200 13 C -0.147 4.147 14 C -0.153 4.153 15 C -0.143 4.143 16 C -0.148 4.148 17 C -0.155 4.155 18 H 0.053 0.947 19 H 0.066 0.934 20 H 0.074 0.926 21 H 0.054 0.946 22 H 0.090 0.910 23 H 0.203 0.797 24 H 0.053 0.947 25 H 0.073 0.927 26 H 0.103 0.897 27 H 0.091 0.909 28 H 0.055 0.945 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.055 0.945 33 H 0.090 0.910 34 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 5.514 -3.512 10.425 12.305 hybrid contribution -0.337 0.168 -1.582 1.626 sum 5.176 -3.344 8.843 10.779 Atomic orbital electron populations 1.21572 0.96395 1.00142 1.01077 1.21888 0.96114 0.97864 1.00236 1.19928 0.91614 0.90895 0.87529 1.42560 1.58123 1.33923 1.00813 1.19356 1.16738 1.12492 0.84737 0.91482 1.25298 1.00781 1.00344 1.00697 1.69802 1.33800 1.28556 1.30270 0.85404 0.77640 0.76499 0.81928 1.22148 1.22874 1.19960 1.21684 1.00342 0.96011 0.96641 1.21460 0.96273 0.96738 1.00828 1.21437 0.95465 1.00129 0.97281 1.21340 0.99021 0.96402 0.97988 1.21850 0.96939 0.96549 1.00132 0.94720 0.93378 0.92607 0.94554 0.90956 0.79722 0.94667 0.92706 0.89724 0.90915 0.94514 0.90578 0.92291 0.92449 0.94522 0.91023 0.94683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.87 9.42 71.98 0.68 -4.19 16 2 C -0.12 -4.31 4.75 30.60 0.15 -4.16 16 3 C 0.19 7.10 0.43 3.60 0.00 7.10 16 4 N -0.71 -34.32 2.99 -303.35 -0.91 -35.23 16 5 C -0.20 -10.84 8.65 84.03 0.73 -10.11 16 6 H 0.07 3.58 6.74 -2.91 -0.02 3.56 16 7 C -0.08 -4.59 5.50 84.86 0.47 -4.13 16 8 N -0.97 -59.77 13.07 21.65 0.28 -59.49 16 9 Si 0.95 47.18 29.55 68.60 2.03 49.20 16 10 H -0.29 -14.43 7.11 99.48 0.71 -13.73 16 11 H -0.30 -15.18 7.11 99.48 0.71 -14.47 16 12 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 13 C -0.11 -3.42 4.53 30.59 0.14 -3.28 16 14 C -0.12 -3.58 5.75 30.59 0.18 -3.40 16 15 C -0.11 -3.02 5.92 30.60 0.18 -2.83 16 16 C -0.11 -3.78 5.76 30.58 0.18 -3.60 16 17 C -0.12 -4.04 4.53 30.58 0.14 -3.90 16 18 H 0.03 1.55 7.21 -2.39 -0.02 1.53 16 19 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 20 H 0.05 1.80 6.83 -2.38 -0.02 1.78 16 21 H 0.04 1.41 7.67 -2.39 -0.02 1.40 16 22 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 23 H 0.37 19.61 6.59 -92.71 -0.61 19.00 16 24 H 0.24 14.81 8.31 -92.71 -0.77 14.04 16 25 H 0.05 1.78 6.69 -2.39 -0.02 1.77 16 26 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.04 1.40 6.90 -2.38 -0.02 1.38 16 29 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.04 1.57 7.61 -2.39 -0.02 1.55 16 33 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.03 1.37 7.08 -2.39 -0.02 1.35 16 Total: -1.00 -61.02 258.93 4.68 -56.34 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: 0.44 Total: 21.67 kcal Atomic # 6 Polarization: -35.33 SS G_CDS: 2.83 Total: -32.50 kcal Atomic # 7 Polarization: -94.09 SS G_CDS: -0.62 Total: -94.71 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.20 kcal Total: -61.02 4.68 -56.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306662281.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.897 kcal (2) G-P(sol) polarization free energy of solvation -61.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds