Wall clock time and date at job start Mon Mar 30 2020 01:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46895 * 110.99894 * 2 1 4 4 C 1.50702 * 109.46770 * 293.94717 * 3 2 1 5 5 H 1.08002 * 120.00299 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99942 * 179.72214 * 4 3 2 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 3 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 3 9 9 H 1.48496 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46983 * 120.00379 * 8 6 4 11 11 H 1.48503 * 109.47491 * 240.00192 * 8 6 4 12 12 C 1.46909 * 110.99555 * 123.94516 * 2 1 3 13 13 C 1.52998 * 110.02002 * 295.34902 * 12 2 1 14 14 C 1.54266 * 110.02764 * 173.95751 * 12 2 1 15 15 C 1.54963 * 104.15716 * 217.13900 * 14 12 2 16 16 C 1.54893 * 102.78071 * 37.89225 * 15 14 12 17 17 C 1.53877 * 110.02924 * 56.74181 * 12 2 1 18 18 H 1.09000 * 109.46747 * 60.00541 * 1 2 3 19 19 H 1.09001 * 109.46627 * 180.02562 * 1 2 3 20 20 H 1.08998 * 109.47329 * 300.00238 * 1 2 3 21 21 H 1.09004 * 109.47258 * 173.95041 * 3 2 1 22 22 H 1.08994 * 109.47601 * 53.94633 * 3 2 1 23 23 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 24 24 H 1.09000 * 109.47122 * 60.69802 * 13 12 2 25 25 H 1.08995 * 109.47244 * 180.70268 * 13 12 2 26 26 H 1.09002 * 109.46856 * 300.70446 * 13 12 2 27 27 H 1.09006 * 110.48756 * 335.78033 * 14 12 2 28 28 H 1.08991 * 110.48551 * 98.42956 * 14 12 2 29 29 H 1.08999 * 110.72303 * 279.57383 * 15 14 12 30 30 H 1.09001 * 110.92638 * 156.29561 * 15 14 12 31 31 H 1.08998 * 110.48461 * 203.41082 * 16 15 14 32 32 H 1.08999 * 110.48745 * 80.75799 * 16 15 14 33 33 H 1.08998 * 110.03020 * 238.55959 * 17 12 2 34 34 H 1.08995 * 110.03463 * 359.95021 * 17 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 -1.2986 5 1 1.0741 1.5113 -2.0486 6 6 2.0224 3.3511 -1.5265 7 7 2.7075 4.0035 -0.6130 8 14 1.5714 4.1909 -3.1329 9 1 0.8045 3.2481 -3.9862 10 1 0.7407 5.3888 -2.8491 11 1 2.8101 4.6039 -3.8404 12 6 1.9954 -0.7659 1.1378 13 6 1.6085 -0.0844 2.4518 14 6 3.5303 -0.8795 1.0334 15 6 3.8407 -2.3074 1.5493 16 6 2.6631 -3.1396 0.9836 17 6 1.4441 -2.2021 1.1066 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3632 -1.0277 0.0005 20 1 -0.3634 0.5139 0.8899 21 1 3.0798 1.3444 0.1083 22 1 1.5611 1.9274 0.8308 23 1 2.9789 4.9209 -0.7736 24 1 0.5224 -0.0421 2.5332 25 1 2.0138 -0.6527 3.2890 26 1 2.0137 0.9274 2.4694 27 1 3.8514 -0.7703 -0.0026 28 1 4.0119 -0.1322 1.6639 29 1 3.8426 -2.3318 2.6390 30 1 4.7915 -2.6658 1.1548 31 1 2.5127 -4.0408 1.5780 32 1 2.8437 -3.3956 -0.0604 33 1 0.9017 -2.4139 2.0280 34 1 0.7853 -2.3306 0.2478 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307676424.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:05 Heat of formation + Delta-G solvation = -10.171715 kcal Electronic energy + Delta-G solvation = -13297.453739 eV Core-core repulsion = 11229.663265 eV Total energy + Delta-G solvation = -2067.790474 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.99262 -34.74986 -32.38653 -29.39244 -28.79718 -26.70712 -25.31121 -24.03460 -21.31414 -20.10267 -17.65840 -16.43360 -15.60625 -14.73395 -14.49467 -13.80997 -13.31549 -13.23562 -13.09450 -12.18176 -11.97598 -11.49287 -11.43701 -11.07858 -10.91128 -10.71296 -10.65903 -10.41456 -10.29687 -10.21094 -10.09930 -10.04462 -9.56940 -9.08547 -8.38031 -7.07892 -5.98015 -3.98354 3.33085 3.40393 3.45528 4.46305 4.94498 5.00790 5.11362 5.36726 5.41718 5.74172 5.77892 5.89428 5.92328 6.00576 6.10454 6.19053 6.25533 6.30583 6.39916 6.45229 6.49382 6.53524 6.68850 6.79763 6.87088 6.90469 7.44065 7.47419 7.88275 8.19632 8.31922 8.67434 9.10234 9.65405 11.12824 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.052925 B = 0.009397 C = 0.009115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.921033 B = 2979.059764 C = 3071.178076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.528 5.528 3 C 0.190 3.810 4 C -0.504 4.504 5 H 0.062 0.938 6 C 0.053 3.947 7 N -0.899 5.899 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.284 1.284 12 C 0.104 3.896 13 C -0.173 4.173 14 C -0.107 4.107 15 C -0.124 4.124 16 C -0.119 4.119 17 C -0.115 4.115 18 H 0.070 0.930 19 H 0.047 0.953 20 H 0.012 0.988 21 H 0.032 0.968 22 H -0.008 1.008 23 H 0.259 0.741 24 H 0.049 0.951 25 H 0.048 0.952 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.875 -10.461 4.391 11.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.252 5.252 3 C 0.065 3.935 4 C -0.543 4.543 5 H 0.080 0.920 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.211 1.211 12 C 0.014 3.986 13 C -0.232 4.232 14 C -0.145 4.145 15 C -0.161 4.161 16 C -0.156 4.156 17 C -0.153 4.153 18 H 0.089 0.911 19 H 0.065 0.935 20 H 0.031 0.969 21 H 0.050 0.950 22 H 0.010 0.990 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.646 -10.507 3.979 11.254 hybrid contribution -0.500 1.112 -0.016 1.219 sum -1.146 -9.395 3.963 10.261 Atomic orbital electron populations 1.22269 0.89528 0.99166 1.00607 1.62481 1.06473 1.17706 1.38555 1.19748 0.95633 0.81821 0.96276 1.21256 1.34460 0.96746 1.01850 0.91967 1.24988 0.95461 0.97399 0.96882 1.69974 1.38725 1.11239 1.33995 0.86479 0.78128 0.79322 0.83708 1.19712 1.21202 1.21070 1.21651 0.94638 0.92919 0.89426 1.22479 1.00985 1.01642 0.98130 1.22409 0.94586 0.95396 1.02094 1.22485 0.97794 0.96152 0.99712 1.22283 0.95353 0.97293 1.00714 1.22315 0.97644 0.94100 1.01258 0.91148 0.93476 0.96947 0.94955 0.99020 0.93109 0.93154 0.93324 0.91925 0.90275 0.92155 0.92255 0.92097 0.92638 0.91688 0.92680 0.90870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 8.66 60.07 0.52 1.18 16 2 N -0.53 -11.62 4.49 -227.29 -1.02 -12.64 16 3 C 0.19 5.01 3.86 -4.98 -0.02 4.99 16 4 C -0.50 -14.40 8.52 -34.44 -0.29 -14.69 16 5 H 0.06 1.77 7.10 -52.49 -0.37 1.40 16 6 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 7 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 8 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 9 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 C 0.10 1.91 0.55 -130.48 -0.07 1.84 16 13 C -0.17 -3.07 7.45 37.16 0.28 -2.80 16 14 C -0.11 -1.89 4.64 -25.03 -0.12 -2.01 16 15 C -0.12 -1.73 6.91 -24.70 -0.17 -1.90 16 16 C -0.12 -1.61 6.83 -25.07 -0.17 -1.78 16 17 C -0.12 -1.78 5.56 -25.61 -0.14 -1.92 16 18 H 0.07 1.51 6.86 -51.93 -0.36 1.15 16 19 H 0.05 0.81 6.01 -51.93 -0.31 0.50 16 20 H 0.01 0.24 6.68 -51.93 -0.35 -0.10 16 21 H 0.03 0.90 6.79 -51.93 -0.35 0.55 16 22 H -0.01 -0.22 6.88 -51.93 -0.36 -0.58 16 23 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 24 H 0.05 0.87 6.69 -51.93 -0.35 0.52 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 1.25 6.64 -51.93 -0.34 0.90 16 27 H 0.08 1.55 7.92 -51.93 -0.41 1.14 16 28 H 0.06 1.09 7.84 -51.93 -0.41 0.68 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.05 0.78 7.67 -51.93 -0.40 0.38 16 34 H 0.07 1.17 6.15 -51.93 -0.32 0.85 16 LS Contribution 259.31 15.07 3.91 3.91 Total: -1.00 -29.58 259.31 -7.26 -36.84 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: -5.57 Total: -3.09 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -0.29 Total: -15.65 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: -0.28 Total: -38.94 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.58 -7.26 -36.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307676424.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.665 kcal (2) G-P(sol) polarization free energy of solvation -29.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds