Wall clock time and date at job start Mon Mar 30 2020 02:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47115 * 2 1 4 4 C 1.52996 * 109.47227 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46886 * 55.00201 * 4 3 2 6 6 C 1.53001 * 109.47284 * 174.99706 * 4 3 2 7 7 N 1.46499 * 109.47332 * 295.00194 * 4 3 2 8 8 C 1.36942 * 119.99768 * 122.76740 * 7 4 3 9 9 H 1.08001 * 119.99297 * 213.74859 * 8 7 4 10 10 C 1.38814 * 120.00265 * 33.74750 * 8 7 4 11 11 N 1.31614 * 119.99816 * 15.03603 * 10 8 7 12 12 Si 1.86794 * 119.99938 * 195.03431 * 10 8 7 13 13 H 1.48497 * 109.47140 * 89.99947 * 12 10 8 14 14 H 1.48500 * 109.47016 * 209.99835 * 12 10 8 15 15 H 1.48500 * 109.47417 * 330.00251 * 12 10 8 16 16 C 1.46493 * 120.00132 * 302.76751 * 7 4 3 17 17 C 1.53004 * 117.50192 * 193.24579 * 16 7 4 18 18 C 1.53001 * 117.50050 * 124.58562 * 16 7 4 19 19 H 1.09001 * 109.47037 * 179.97438 * 1 2 3 20 20 H 1.09007 * 109.47029 * 300.00248 * 1 2 3 21 21 H 1.09001 * 109.46860 * 59.99797 * 1 2 3 22 22 H 1.08994 * 109.47380 * 240.00323 * 2 1 3 23 23 H 1.08996 * 109.47284 * 119.99643 * 2 1 3 24 24 H 1.09004 * 109.46642 * 59.99970 * 3 2 1 25 25 H 1.08999 * 109.47167 * 300.00590 * 3 2 1 26 26 H 1.09001 * 109.46754 * 60.00415 * 6 4 3 27 27 H 1.08997 * 109.47442 * 180.02562 * 6 4 3 28 28 H 1.08993 * 109.47183 * 300.00882 * 6 4 3 29 29 H 0.97000 * 119.99846 * 184.98633 * 11 10 8 30 30 H 1.09004 * 115.54715 * 338.91590 * 16 7 4 31 31 H 1.09002 * 117.49380 * 0.02562 * 17 16 7 32 32 H 1.09003 * 117.50115 * 145.01607 * 17 16 7 33 33 H 1.08998 * 117.49738 * 214.97995 * 18 16 7 34 34 H 1.08994 * 117.50023 * 0.02562 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9336 0.8531 -0.8410 6 6 4.0800 2.8796 -0.1251 7 7 4.0578 0.8590 1.2527 8 6 4.8913 -0.2271 1.2228 9 1 4.8337 -0.9734 2.0014 10 6 5.8100 -0.3689 0.1919 11 7 6.0930 0.6566 -0.5831 12 14 6.6447 -2.0151 -0.0954 13 1 5.8333 -2.8233 -1.0406 14 1 7.9961 -1.7914 -0.6691 15 1 6.7684 -2.7394 1.1951 16 6 3.6541 1.4374 2.5366 17 6 4.4241 0.9970 3.7833 18 6 2.9925 0.5060 3.5543 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 1.8934 -0.5137 -0.8900 23 1 1.8933 -0.5137 0.8900 24 1 1.6766 1.9563 0.8900 25 1 1.6766 1.9564 -0.8899 26 1 3.7164 3.4691 0.7165 27 1 5.1700 2.8796 -0.1252 28 1 3.7170 3.3138 -1.0566 29 1 6.6790 0.5399 -1.3471 30 1 3.3062 2.4697 2.4986 31 1 5.2314 0.2771 3.6480 32 1 4.5825 1.7394 4.5655 33 1 2.2095 0.9256 4.1859 34 1 2.8579 -0.5372 3.2686 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307942654.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:52 Heat of formation + Delta-G solvation = 26.802137 kcal Electronic energy + Delta-G solvation = -13459.421262 eV Core-core repulsion = 11393.234094 eV Total energy + Delta-G solvation = -2066.187168 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -37.53122 -34.82582 -32.91664 -31.04745 -28.64286 -25.70597 -24.07664 -21.33806 -21.07684 -20.60402 -18.90780 -16.25580 -15.32677 -14.69608 -14.08985 -13.75158 -13.16784 -12.76265 -12.54842 -11.97513 -11.71378 -11.38079 -11.24662 -10.83079 -10.78719 -10.69589 -10.56946 -10.35395 -10.11157 -9.83884 -9.67919 -9.38651 -9.29539 -9.08633 -8.33880 -6.46880 -5.74947 -3.28292 3.37749 3.45456 3.46179 4.48643 5.01733 5.28386 5.44461 5.64008 5.73409 5.88557 5.95354 6.13942 6.20008 6.33250 6.36258 6.48229 6.52209 6.55438 6.63648 6.70268 6.77372 6.92849 6.97364 7.05537 7.10395 7.21605 7.24258 7.69549 7.74782 7.89460 8.52897 9.26703 9.87938 10.42836 11.27218 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.025446 B = 0.015003 C = 0.013274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.101196 B = 1865.902302 C = 2108.946023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.112 4.112 3 C -0.131 4.131 4 C 0.190 3.810 5 H 0.092 0.908 6 C -0.147 4.147 7 N -0.546 5.546 8 C -0.252 4.252 9 H 0.063 0.937 10 C 0.011 3.989 11 N -0.892 5.892 12 Si 0.897 3.103 13 H -0.287 1.287 14 H -0.291 1.291 15 H -0.279 1.279 16 C 0.135 3.865 17 C -0.202 4.202 18 C -0.228 4.228 19 H 0.043 0.957 20 H 0.046 0.954 21 H 0.043 0.957 22 H 0.051 0.949 23 H 0.072 0.928 24 H 0.047 0.953 25 H 0.043 0.957 26 H 0.023 0.977 27 H 0.076 0.924 28 H 0.027 0.973 29 H 0.253 0.747 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.644 1.121 1.703 6.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C -0.170 4.170 4 C 0.084 3.916 5 H 0.110 0.890 6 C -0.206 4.206 7 N -0.262 5.262 8 C -0.382 4.382 9 H 0.081 0.919 10 C -0.189 4.189 11 N -0.535 5.535 12 Si 0.727 3.273 13 H -0.214 1.214 14 H -0.218 1.218 15 H -0.204 1.204 16 C 0.024 3.976 17 C -0.241 4.241 18 C -0.269 4.269 19 H 0.062 0.938 20 H 0.065 0.935 21 H 0.062 0.938 22 H 0.070 0.930 23 H 0.090 0.910 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.042 0.958 27 H 0.095 0.905 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.104 0.896 31 H 0.115 0.885 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.447 1.153 1.539 6.728 hybrid contribution 0.462 -0.856 -0.111 0.979 sum -5.985 0.297 1.428 6.160 Atomic orbital electron populations 1.21808 0.97812 1.00320 1.00650 1.21361 0.93208 0.97900 1.02538 1.22171 0.99466 0.95818 0.99513 1.20270 0.88055 0.93188 0.90071 0.89002 1.22136 1.03628 0.97556 0.97296 1.43486 1.52286 1.32414 0.98058 1.19039 1.10467 0.97977 1.10691 0.91923 1.25112 0.96168 0.96916 1.00671 1.70046 1.37892 1.27716 1.17815 0.86381 0.78712 0.84123 0.78125 1.21435 1.21777 1.20432 1.20920 0.99440 0.93517 0.83678 1.23091 0.95201 1.04409 1.01417 1.23368 0.94722 1.01529 1.07322 0.93790 0.93463 0.93763 0.93025 0.90967 0.93464 0.93836 0.95825 0.90475 0.95406 0.93739 0.89624 0.88517 0.91051 0.91184 0.89830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.91 37.16 0.37 -1.89 16 2 C -0.11 -2.10 5.82 -26.73 -0.16 -2.25 16 3 C -0.13 -2.52 4.61 -26.73 -0.12 -2.65 16 4 C 0.19 4.35 1.76 -67.93 -0.12 4.23 16 5 H 0.09 2.39 6.15 -51.93 -0.32 2.07 16 6 C -0.15 -3.22 9.06 37.16 0.34 -2.89 16 7 N -0.55 -13.14 2.16 -158.15 -0.34 -13.48 16 8 C -0.25 -6.67 8.26 -15.06 -0.12 -6.79 16 9 H 0.06 1.68 7.03 -52.49 -0.37 1.32 16 10 C 0.01 0.29 4.90 -17.43 -0.09 0.21 16 11 N -0.89 -24.82 10.24 55.49 0.57 -24.25 16 12 Si 0.90 21.46 29.58 -169.99 -5.03 16.43 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 C 0.13 2.88 5.30 -67.93 -0.36 2.52 16 17 C -0.20 -4.11 9.79 -26.69 -0.26 -4.37 16 18 C -0.23 -4.43 10.10 -26.69 -0.27 -4.70 16 19 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 20 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 21 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 23 H 0.07 1.49 7.75 -51.93 -0.40 1.09 16 24 H 0.05 0.89 7.38 -51.93 -0.38 0.51 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.02 0.47 7.04 -51.93 -0.37 0.11 16 27 H 0.08 1.92 7.09 -51.93 -0.37 1.55 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.25 6.87 8.32 -40.82 -0.34 6.53 16 30 H 0.09 1.75 7.04 -51.93 -0.37 1.38 16 31 H 0.10 2.16 6.83 -51.93 -0.35 1.81 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.08 1.73 8.09 -51.93 -0.42 1.31 16 LS Contribution 270.67 15.07 4.08 4.08 Total: -1.00 -26.77 270.67 -7.38 -34.15 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -5.87 Total: 1.65 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: -0.79 Total: -18.58 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: 0.23 Total: -37.73 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -26.77 -7.38 -34.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307942654.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.955 kcal (2) G-P(sol) polarization free energy of solvation -26.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds