Wall clock time and date at job start Mon Mar 30 2020 02:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47115 * 2 1 4 4 C 1.52996 * 109.47227 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46886 * 55.00201 * 4 3 2 6 6 C 1.53001 * 109.47284 * 174.99706 * 4 3 2 7 7 N 1.46499 * 109.47332 * 295.00194 * 4 3 2 8 8 C 1.36942 * 119.99768 * 122.76740 * 7 4 3 9 9 H 1.08001 * 119.99297 * 213.74859 * 8 7 4 10 10 C 1.38814 * 120.00265 * 33.74750 * 8 7 4 11 11 N 1.31614 * 119.99816 * 15.03603 * 10 8 7 12 12 Si 1.86794 * 119.99938 * 195.03431 * 10 8 7 13 13 H 1.48497 * 109.47140 * 89.99947 * 12 10 8 14 14 H 1.48500 * 109.47016 * 209.99835 * 12 10 8 15 15 H 1.48500 * 109.47417 * 330.00251 * 12 10 8 16 16 C 1.46493 * 120.00132 * 302.76751 * 7 4 3 17 17 C 1.53004 * 117.50192 * 193.24579 * 16 7 4 18 18 C 1.53001 * 117.50050 * 124.58562 * 16 7 4 19 19 H 1.09001 * 109.47037 * 179.97438 * 1 2 3 20 20 H 1.09007 * 109.47029 * 300.00248 * 1 2 3 21 21 H 1.09001 * 109.46860 * 59.99797 * 1 2 3 22 22 H 1.08994 * 109.47380 * 240.00323 * 2 1 3 23 23 H 1.08996 * 109.47284 * 119.99643 * 2 1 3 24 24 H 1.09004 * 109.46642 * 59.99970 * 3 2 1 25 25 H 1.08999 * 109.47167 * 300.00590 * 3 2 1 26 26 H 1.09001 * 109.46754 * 60.00415 * 6 4 3 27 27 H 1.08997 * 109.47442 * 180.02562 * 6 4 3 28 28 H 1.08993 * 109.47183 * 300.00882 * 6 4 3 29 29 H 0.97000 * 119.99846 * 184.98633 * 11 10 8 30 30 H 1.09004 * 115.54715 * 338.91590 * 16 7 4 31 31 H 1.09002 * 117.49380 * 0.02562 * 17 16 7 32 32 H 1.09003 * 117.50115 * 145.01607 * 17 16 7 33 33 H 1.08998 * 117.49738 * 214.97995 * 18 16 7 34 34 H 1.08994 * 117.50023 * 0.02562 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9336 0.8531 -0.8410 6 6 4.0800 2.8796 -0.1251 7 7 4.0578 0.8590 1.2527 8 6 4.8913 -0.2271 1.2228 9 1 4.8337 -0.9734 2.0014 10 6 5.8100 -0.3689 0.1919 11 7 6.0930 0.6566 -0.5831 12 14 6.6447 -2.0151 -0.0954 13 1 5.8333 -2.8233 -1.0406 14 1 7.9961 -1.7914 -0.6691 15 1 6.7684 -2.7394 1.1951 16 6 3.6541 1.4374 2.5366 17 6 4.4241 0.9970 3.7833 18 6 2.9925 0.5060 3.5543 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 1.8934 -0.5137 -0.8900 23 1 1.8933 -0.5137 0.8900 24 1 1.6766 1.9563 0.8900 25 1 1.6766 1.9564 -0.8899 26 1 3.7164 3.4691 0.7165 27 1 5.1700 2.8796 -0.1252 28 1 3.7170 3.3138 -1.0566 29 1 6.6790 0.5399 -1.3471 30 1 3.3062 2.4697 2.4986 31 1 5.2314 0.2771 3.6480 32 1 4.5825 1.7394 4.5655 33 1 2.2095 0.9256 4.1859 34 1 2.8579 -0.5372 3.2686 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307942654.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:52 Heat of formation + Delta-G solvation = 13.891367 kcal Electronic energy + Delta-G solvation = -13459.981115 eV Core-core repulsion = 11393.234094 eV Total energy + Delta-G solvation = -2066.747021 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.26786 -36.43257 -34.69981 -32.79960 -30.49853 -27.20324 -26.04138 -22.93752 -22.73218 -22.17630 -20.72366 -18.11152 -17.14519 -16.48063 -15.86165 -15.39562 -14.72840 -14.41196 -14.13102 -13.73831 -13.34212 -13.03209 -12.85292 -12.71453 -12.64464 -12.40544 -12.16597 -11.99505 -11.88610 -11.52300 -11.30183 -11.08401 -11.00932 -10.78248 -10.33064 -8.39243 -7.75990 -5.32056 1.44622 1.47081 1.53866 2.51840 3.23465 3.52147 3.56201 4.19281 4.33337 4.35796 4.47099 4.53623 4.60169 4.82658 4.90441 4.96279 4.97904 5.04584 5.06270 5.11013 5.21998 5.28464 5.39115 5.41750 5.51351 5.57456 5.69322 5.70420 5.87388 6.04054 6.51087 7.26440 7.98259 8.45380 9.21260 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.025446 B = 0.015003 C = 0.013274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.101196 B = 1865.902302 C = 2108.946023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 C -0.119 4.119 4 C 0.188 3.812 5 H 0.054 0.946 6 C -0.137 4.137 7 N -0.559 5.559 8 C -0.251 4.251 9 H 0.053 0.947 10 C -0.036 4.036 11 N -0.915 5.915 12 Si 0.950 3.050 13 H -0.287 1.287 14 H -0.296 1.296 15 H -0.275 1.275 16 C 0.113 3.887 17 C -0.203 4.203 18 C -0.204 4.204 19 H 0.053 0.947 20 H 0.056 0.944 21 H 0.058 0.942 22 H 0.034 0.966 23 H 0.046 0.954 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.038 0.962 27 H 0.040 0.960 28 H 0.045 0.955 29 H 0.247 0.753 30 H 0.101 0.899 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.325 1.525 2.504 8.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.146 4.146 3 C -0.158 4.158 4 C 0.082 3.918 5 H 0.072 0.928 6 C -0.196 4.196 7 N -0.277 5.277 8 C -0.381 4.381 9 H 0.070 0.930 10 C -0.233 4.233 11 N -0.559 5.559 12 Si 0.779 3.221 13 H -0.214 1.214 14 H -0.223 1.223 15 H -0.200 1.200 16 C 0.004 3.996 17 C -0.242 4.242 18 C -0.245 4.245 19 H 0.072 0.928 20 H 0.075 0.925 21 H 0.077 0.923 22 H 0.053 0.947 23 H 0.065 0.935 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.119 0.881 31 H 0.088 0.912 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.146 1.555 2.363 8.623 hybrid contribution 0.967 -0.967 -0.309 1.402 sum -7.179 0.588 2.053 7.490 Atomic orbital electron populations 1.21717 0.94656 1.01477 1.01841 1.21280 0.95915 0.96984 1.00471 1.22018 0.96557 0.96527 1.00731 1.20227 0.90360 0.92743 0.88454 0.92825 1.21982 1.01203 0.97511 0.98867 1.43587 1.52285 1.32311 0.99477 1.19125 1.10274 0.98603 1.10120 0.92952 1.25684 0.97173 0.99345 1.01093 1.70177 1.38732 1.28882 1.18127 0.85543 0.77478 0.81233 0.77855 1.21407 1.22253 1.20036 1.21150 1.00867 0.94646 0.82927 1.23094 0.95033 1.04444 1.01593 1.23301 0.94950 1.00221 1.05990 0.92754 0.92467 0.92311 0.94718 0.93488 0.92445 0.92116 0.94270 0.94066 0.93639 0.94372 0.88109 0.91250 0.88287 0.87894 0.91501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.84 9.91 71.98 0.71 -3.13 16 2 C -0.11 -3.93 5.82 30.60 0.18 -3.75 16 3 C -0.12 -4.40 4.61 30.60 0.14 -4.26 16 4 C 0.19 8.56 1.76 44.99 0.08 8.64 16 5 H 0.05 2.86 6.15 -2.39 -0.01 2.84 16 6 C -0.14 -5.90 9.06 71.98 0.65 -5.25 16 7 N -0.56 -26.88 2.16 -654.25 -1.41 -28.29 16 8 C -0.25 -13.47 8.26 84.03 0.69 -12.78 16 9 H 0.05 2.87 7.03 -2.91 -0.02 2.85 16 10 C -0.04 -1.98 4.90 84.86 0.42 -1.57 16 11 N -0.91 -52.29 10.24 21.65 0.22 -52.07 16 12 Si 0.95 45.03 29.58 68.60 2.03 47.06 16 13 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 14 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 15 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 16 C 0.11 4.66 5.30 44.99 0.24 4.90 16 17 C -0.20 -7.91 9.79 30.62 0.30 -7.61 16 18 C -0.20 -7.43 10.10 30.62 0.31 -7.12 16 19 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 20 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 21 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 22 H 0.03 1.33 8.14 -2.39 -0.02 1.32 16 23 H 0.05 1.92 7.75 -2.39 -0.02 1.90 16 24 H 0.06 2.00 7.38 -2.38 -0.02 1.98 16 25 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.04 1.52 7.04 -2.39 -0.02 1.50 16 27 H 0.04 2.06 7.09 -2.39 -0.02 2.04 16 28 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.25 13.84 8.32 -92.71 -0.77 13.07 16 30 H 0.10 3.84 7.04 -2.39 -0.02 3.82 16 31 H 0.07 3.10 6.83 -2.39 -0.02 3.08 16 32 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 33 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 34 H 0.07 2.67 8.09 -2.39 -0.02 2.66 16 Total: -1.00 -57.68 270.67 5.59 -52.08 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 1.04 Total: 13.15 kcal Atomic # 6 Polarization: -35.65 SS G_CDS: 3.72 Total: -31.93 kcal Atomic # 7 Polarization: -79.17 SS G_CDS: -1.19 Total: -80.36 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -57.68 5.59 -52.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307942654.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.973 kcal (2) G-P(sol) polarization free energy of solvation -57.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds