Wall clock time and date at job start Mon Mar 30 2020 02:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47154 * 2 1 4 4 C 1.52999 * 109.47193 * 120.00009 * 2 1 3 5 5 H 1.08997 * 112.90886 * 311.24666 * 4 2 1 6 6 C 1.54042 * 113.69503 * 82.57835 * 4 2 1 7 7 C 1.53782 * 87.08013 * 139.94511 * 6 4 2 8 8 C 1.53781 * 113.61249 * 180.02562 * 4 2 1 9 9 H 1.09002 * 113.61844 * 105.38975 * 8 4 2 10 10 N 1.46901 * 113.61443 * 334.56393 * 8 4 2 11 11 C 1.46905 * 110.99870 * 156.53183 * 10 8 4 12 12 C 1.50697 * 109.47066 * 180.02562 * 11 10 8 13 13 H 1.08000 * 120.00144 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00103 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99826 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00043 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47237 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.46695 * 120.00427 * 16 14 12 19 19 H 1.48494 * 109.47363 * 240.00198 * 16 14 12 20 20 H 1.09003 * 109.46991 * 299.99949 * 1 2 3 21 21 H 1.09000 * 109.46922 * 59.99512 * 1 2 3 22 22 H 1.08992 * 109.47134 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47148 * 240.00339 * 2 1 3 24 24 H 1.08998 * 109.47399 * 180.02562 * 3 2 1 25 25 H 1.09007 * 109.46976 * 300.00111 * 3 2 1 26 26 H 1.09003 * 109.47130 * 60.00135 * 3 2 1 27 27 H 1.09002 * 113.61860 * 25.40196 * 6 4 2 28 28 H 1.08998 * 113.69691 * 254.50168 * 6 4 2 29 29 H 1.08991 * 113.61814 * 220.02042 * 7 6 4 30 30 H 1.09004 * 113.68867 * 89.12745 * 7 6 4 31 31 H 1.00901 * 111.00067 * 280.48359 * 10 8 4 32 32 H 1.09001 * 109.46798 * 300.00327 * 11 10 8 33 33 H 1.08998 * 109.46961 * 60.00043 * 11 10 8 34 34 H 0.96997 * 120.00392 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.5573 -0.3778 2.1642 6 6 2.0746 -2.2548 1.1079 7 6 3.4132 -2.2156 1.8639 8 6 3.5738 -0.7762 1.3457 9 1 3.9898 -0.0902 2.0836 10 7 4.2487 -0.6915 0.0437 11 6 5.6241 -0.1978 0.1948 12 6 6.2828 -0.1239 -1.1586 13 1 5.7345 -0.4142 -2.0426 14 6 7.5851 0.3153 -1.2684 15 7 8.2526 0.6693 -0.1920 16 14 8.4018 0.4062 -2.9459 17 1 7.4445 -0.0447 -3.9876 18 1 8.8100 1.8071 -3.2224 19 1 9.6001 -0.4707 -2.9613 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 3.1300 1.4426 -0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6767 1.9564 0.8900 27 1 2.1654 -2.5964 0.0768 28 1 1.2797 -2.7630 1.6537 29 1 4.1576 -2.9073 1.4699 30 1 3.3066 -2.2801 2.9468 31 1 4.2343 -1.5824 -0.4297 32 1 5.6063 0.7949 0.6446 33 1 6.1856 -0.8772 0.8360 34 1 9.1689 0.9780 -0.2691 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307957079.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:29 Heat of formation + Delta-G solvation = -1.683457 kcal Electronic energy + Delta-G solvation = -12930.352982 eV Core-core repulsion = 10862.930586 eV Total energy + Delta-G solvation = -2067.422396 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.26076 -34.24136 -33.28916 -31.52948 -26.93368 -26.20505 -24.93134 -23.68332 -21.66960 -20.12012 -18.25889 -16.45414 -15.35562 -14.74236 -14.39494 -14.00238 -13.38745 -13.03057 -12.59940 -12.52870 -12.16264 -11.80262 -11.65716 -11.41210 -11.13986 -10.81540 -10.77532 -10.47588 -10.41327 -10.10247 -9.92392 -9.57511 -9.48109 -9.04921 -8.46828 -7.19453 -6.01954 -4.03603 3.31579 3.38940 3.43955 4.43934 4.94620 5.05190 5.10598 5.29630 5.34291 5.51508 5.53640 5.72556 5.86504 5.97667 6.03760 6.10271 6.21638 6.25844 6.28480 6.32694 6.43651 6.62163 6.69203 6.71288 7.04025 7.13477 7.31601 7.47532 7.82002 8.16397 8.43897 8.65741 9.06563 9.61393 11.09158 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.044241 B = 0.008636 C = 0.007920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.740466 B = 3241.278773 C = 3534.485997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.068 4.068 3 C -0.141 4.141 4 C -0.100 4.100 5 H 0.078 0.922 6 C -0.132 4.132 7 C -0.175 4.175 8 C 0.077 3.923 9 H 0.071 0.929 10 N -0.663 5.663 11 C 0.195 3.805 12 C -0.512 4.512 13 H 0.062 0.938 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.897 3.103 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.285 1.285 20 H 0.045 0.955 21 H 0.047 0.953 22 H 0.046 0.954 23 H 0.076 0.924 24 H 0.082 0.918 25 H 0.040 0.960 26 H 0.035 0.965 27 H 0.078 0.922 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.329 0.671 32 H 0.027 0.973 33 H -0.015 1.015 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.800 -3.028 2.356 12.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.086 4.086 3 C -0.199 4.199 4 C -0.119 4.119 5 H 0.096 0.904 6 C -0.170 4.170 7 C -0.215 4.215 8 C -0.035 4.035 9 H 0.089 0.911 10 N -0.292 5.292 11 C 0.068 3.932 12 C -0.551 4.551 13 H 0.080 0.920 14 C -0.146 4.146 15 N -0.537 5.537 16 Si 0.725 3.275 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.212 1.212 20 H 0.065 0.935 21 H 0.066 0.934 22 H 0.065 0.935 23 H 0.095 0.905 24 H 0.101 0.899 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.097 0.903 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.146 0.854 32 H 0.046 0.954 33 H 0.003 0.997 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.861 -2.321 2.247 12.293 hybrid contribution 0.993 -0.712 -0.338 1.268 sum -10.868 -3.033 1.909 11.443 Atomic orbital electron populations 1.21887 0.97091 1.00662 1.00776 1.20777 0.92967 0.96797 0.98068 1.21762 1.03831 0.94966 0.99313 1.22794 0.96737 0.94463 0.97943 0.90370 1.22926 0.96947 0.96740 1.00346 1.23605 0.97996 1.00033 0.99837 1.22609 0.94084 0.94349 0.92460 0.91062 1.60518 1.20741 1.31868 1.16032 1.19577 0.81935 0.94906 0.96743 1.21228 0.97000 1.43518 0.93323 0.91960 1.24985 0.97316 0.95517 0.96781 1.69971 1.10899 1.44885 1.27993 0.86453 0.79230 0.77615 0.84178 1.19674 1.21033 1.21151 0.93545 0.93413 0.93469 0.90516 0.89937 0.94126 0.94602 0.90313 0.92665 0.91807 0.90889 0.85362 0.95447 0.99676 0.93014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.19 37.16 0.34 -1.50 16 2 C -0.07 -1.01 2.18 -90.62 -0.20 -1.21 16 3 C -0.14 -2.30 8.95 37.16 0.33 -1.97 16 4 C -0.10 -1.49 3.11 -89.67 -0.28 -1.77 16 5 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 6 C -0.13 -1.84 7.39 -25.78 -0.19 -2.03 16 7 C -0.18 -2.70 7.61 -25.90 -0.20 -2.89 16 8 C 0.08 1.37 3.45 -66.88 -0.23 1.13 16 9 H 0.07 1.35 7.88 -51.93 -0.41 0.94 16 10 N -0.66 -13.80 4.37 -107.11 -0.47 -14.27 16 11 C 0.19 5.06 5.29 -4.97 -0.03 5.03 16 12 C -0.51 -14.43 9.32 -34.44 -0.32 -14.75 16 13 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 14 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -26.92 13.29 55.43 0.74 -26.19 16 16 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 17 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 20 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 21 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.08 1.27 7.58 -51.93 -0.39 0.88 16 24 H 0.08 1.61 6.57 -51.93 -0.34 1.27 16 25 H 0.04 0.62 8.14 -51.92 -0.42 0.20 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 1.11 7.87 -51.93 -0.41 0.71 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 1.04 8.09 -51.93 -0.42 0.62 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.33 6.70 8.08 -39.29 -0.32 6.38 16 32 H 0.03 0.77 8.13 -51.93 -0.42 0.35 16 33 H -0.01 -0.41 8.14 -51.93 -0.42 -0.83 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 LS Contribution 274.07 15.07 4.13 4.13 Total: -1.00 -28.57 274.07 -7.55 -36.12 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -6.06 Total: 1.92 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: -0.87 Total: -18.47 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: 0.27 Total: -40.46 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.57 -7.55 -36.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307957079.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.440 kcal (2) G-P(sol) polarization free energy of solvation -28.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds