Wall clock time and date at job start Mon Mar 30 2020 02:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47154 * 2 1 4 4 C 1.52999 * 109.47193 * 120.00009 * 2 1 3 5 5 H 1.08997 * 112.90886 * 311.24666 * 4 2 1 6 6 C 1.54042 * 113.69503 * 82.57835 * 4 2 1 7 7 C 1.53782 * 87.08013 * 139.94511 * 6 4 2 8 8 C 1.53781 * 113.61249 * 180.02562 * 4 2 1 9 9 H 1.09002 * 113.61844 * 105.38975 * 8 4 2 10 10 N 1.46901 * 113.61443 * 334.56393 * 8 4 2 11 11 C 1.46905 * 110.99870 * 156.53183 * 10 8 4 12 12 C 1.50697 * 109.47066 * 180.02562 * 11 10 8 13 13 H 1.08000 * 120.00144 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00103 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99826 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00043 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47237 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.46695 * 120.00427 * 16 14 12 19 19 H 1.48494 * 109.47363 * 240.00198 * 16 14 12 20 20 H 1.09003 * 109.46991 * 299.99949 * 1 2 3 21 21 H 1.09000 * 109.46922 * 59.99512 * 1 2 3 22 22 H 1.08992 * 109.47134 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47148 * 240.00339 * 2 1 3 24 24 H 1.08998 * 109.47399 * 180.02562 * 3 2 1 25 25 H 1.09007 * 109.46976 * 300.00111 * 3 2 1 26 26 H 1.09003 * 109.47130 * 60.00135 * 3 2 1 27 27 H 1.09002 * 113.61860 * 25.40196 * 6 4 2 28 28 H 1.08998 * 113.69691 * 254.50168 * 6 4 2 29 29 H 1.08991 * 113.61814 * 220.02042 * 7 6 4 30 30 H 1.09004 * 113.68867 * 89.12745 * 7 6 4 31 31 H 1.00901 * 111.00067 * 280.48359 * 10 8 4 32 32 H 1.09001 * 109.46798 * 300.00327 * 11 10 8 33 33 H 1.08998 * 109.46961 * 60.00043 * 11 10 8 34 34 H 0.96997 * 120.00392 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.5573 -0.3778 2.1642 6 6 2.0746 -2.2548 1.1079 7 6 3.4132 -2.2156 1.8639 8 6 3.5738 -0.7762 1.3457 9 1 3.9898 -0.0902 2.0836 10 7 4.2487 -0.6915 0.0437 11 6 5.6241 -0.1978 0.1948 12 6 6.2828 -0.1239 -1.1586 13 1 5.7345 -0.4142 -2.0426 14 6 7.5851 0.3153 -1.2684 15 7 8.2526 0.6693 -0.1920 16 14 8.4018 0.4062 -2.9459 17 1 7.4445 -0.0447 -3.9876 18 1 8.8100 1.8071 -3.2224 19 1 9.6001 -0.4707 -2.9613 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 3.1300 1.4426 -0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6767 1.9564 0.8900 27 1 2.1654 -2.5964 0.0768 28 1 1.2797 -2.7630 1.6537 29 1 4.1576 -2.9073 1.4699 30 1 3.3066 -2.2801 2.9468 31 1 4.2343 -1.5824 -0.4297 32 1 5.6063 0.7949 0.6446 33 1 6.1856 -0.8772 0.8360 34 1 9.1689 0.9780 -0.2691 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307957079.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:29 Heat of formation + Delta-G solvation = -18.439780 kcal Electronic energy + Delta-G solvation = -12931.079591 eV Core-core repulsion = 10862.930586 eV Total energy + Delta-G solvation = -2068.149005 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.59917 -35.96758 -34.85476 -33.43138 -28.63092 -27.70606 -26.16415 -25.15316 -23.68370 -21.34584 -19.67772 -18.47130 -17.05826 -16.31833 -16.00795 -15.46086 -14.70790 -14.61901 -14.30134 -14.01508 -13.67023 -13.39991 -12.92936 -12.80991 -12.74618 -12.66118 -12.41605 -12.10124 -11.75244 -11.65501 -11.41469 -11.19747 -10.82662 -10.70047 -10.63472 -8.94780 -8.22365 -6.33178 1.40181 1.40943 1.54795 2.39640 3.11016 3.50475 3.74531 3.88859 4.01847 4.18954 4.39245 4.49504 4.66258 4.78216 4.84881 4.93083 4.96140 5.03963 5.08029 5.12276 5.19812 5.23459 5.26553 5.42652 5.48764 5.49604 5.64706 5.76224 5.83695 6.05860 6.51722 6.77963 6.93283 7.37991 8.89457 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.044241 B = 0.008636 C = 0.007920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.740466 B = 3241.278773 C = 3534.485997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.067 4.067 3 C -0.138 4.138 4 C -0.089 4.089 5 H 0.096 0.904 6 C -0.117 4.117 7 C -0.170 4.170 8 C 0.055 3.945 9 H 0.049 0.951 10 N -0.654 5.654 11 C 0.214 3.786 12 C -0.531 4.531 13 H 0.064 0.936 14 C 0.000 4.000 15 N -0.935 5.935 16 Si 0.972 3.028 17 H -0.262 1.262 18 H -0.279 1.279 19 H -0.278 1.278 20 H 0.056 0.944 21 H 0.052 0.948 22 H 0.059 0.941 23 H 0.059 0.941 24 H 0.042 0.958 25 H 0.045 0.955 26 H 0.047 0.953 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.051 0.949 30 H 0.091 0.909 31 H 0.332 0.668 32 H -0.004 1.004 33 H -0.044 1.044 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.417 -3.752 1.723 14.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.086 4.086 3 C -0.196 4.196 4 C -0.108 4.108 5 H 0.114 0.886 6 C -0.155 4.155 7 C -0.209 4.209 8 C -0.056 4.056 9 H 0.067 0.933 10 N -0.283 5.283 11 C 0.086 3.914 12 C -0.569 4.569 13 H 0.082 0.918 14 C -0.198 4.198 15 N -0.576 5.576 16 Si 0.796 3.204 17 H -0.186 1.186 18 H -0.205 1.205 19 H -0.203 1.203 20 H 0.075 0.925 21 H 0.071 0.929 22 H 0.079 0.921 23 H 0.077 0.923 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.070 0.930 30 H 0.110 0.890 31 H 0.150 0.850 32 H 0.014 0.986 33 H -0.026 1.026 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.505 -3.056 1.621 13.942 hybrid contribution 1.486 -0.460 -0.074 1.557 sum -12.020 -3.517 1.547 12.619 Atomic orbital electron populations 1.21799 0.94441 1.01808 1.01589 1.20748 0.95109 0.95422 0.97297 1.21704 1.01186 0.96488 1.00214 1.22770 0.93658 0.95602 0.98735 0.88577 1.22848 0.96523 0.95790 1.00313 1.23575 0.98791 0.97375 1.01150 1.22789 0.96109 0.96017 0.90671 0.93260 1.60400 1.17603 1.32072 1.18236 1.19158 0.84307 0.92693 0.95221 1.21571 0.97625 1.43670 0.94040 0.91777 1.25951 0.97994 0.94836 1.01023 1.70101 1.11399 1.45568 1.30501 0.85295 0.78188 0.77800 0.79076 1.18610 1.20479 1.20330 0.92485 0.92916 0.92147 0.92294 0.93898 0.93564 0.93381 0.90573 0.89815 0.93032 0.89049 0.85012 0.98611 1.02644 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 9.19 71.98 0.66 -2.38 16 2 C -0.07 -1.91 2.18 -10.79 -0.02 -1.93 16 3 C -0.14 -4.46 8.95 71.98 0.64 -3.81 16 4 C -0.09 -2.47 3.11 -10.18 -0.03 -2.50 16 5 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 6 C -0.12 -2.94 7.39 31.21 0.23 -2.71 16 7 C -0.17 -5.02 7.61 31.13 0.24 -4.78 16 8 C 0.06 1.98 3.45 45.45 0.16 2.14 16 9 H 0.05 1.95 7.88 -2.39 -0.02 1.93 16 10 N -0.65 -28.09 4.37 -492.77 -2.15 -30.24 16 11 C 0.21 11.66 5.29 85.55 0.45 12.12 16 12 C -0.53 -30.64 9.32 25.60 0.24 -30.40 16 13 H 0.06 3.60 7.81 -2.91 -0.02 3.57 16 14 C 0.00 -0.01 5.46 84.66 0.46 0.46 16 15 N -0.94 -57.41 13.29 21.45 0.28 -57.13 16 16 Si 0.97 44.88 29.54 68.60 2.03 46.91 16 17 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 19 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 20 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 21 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 22 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.06 1.89 7.58 -2.39 -0.02 1.87 16 24 H 0.04 1.71 6.57 -2.39 -0.02 1.70 16 25 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 26 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.08 1.97 7.87 -2.39 -0.02 1.95 16 28 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.05 1.65 8.09 -2.39 -0.02 1.63 16 30 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 31 H 0.33 13.78 8.08 -89.69 -0.73 13.05 16 32 H 0.00 -0.25 8.13 -2.39 -0.02 -0.27 16 33 H -0.04 -2.61 8.14 -2.39 -0.02 -2.63 16 34 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -62.54 274.07 3.50 -59.03 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 0.32 Total: 15.24 kcal Atomic # 6 Polarization: -36.84 SS G_CDS: 3.03 Total: -33.81 kcal Atomic # 7 Polarization: -85.50 SS G_CDS: -1.87 Total: -87.37 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -62.54 3.50 -59.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307957079.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.595 kcal (2) G-P(sol) polarization free energy of solvation -62.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds