Wall clock time and date at job start Mon Mar 30 2020 02:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.47028 * 2 1 4 4 C 1.52998 * 109.46885 * 240.00025 * 2 1 3 5 5 C 1.52995 * 109.46950 * 120.00042 * 2 1 3 6 6 H 1.08999 * 109.47504 * 299.99553 * 5 2 1 7 7 N 1.46505 * 109.47041 * 179.97438 * 5 2 1 8 8 C 1.36934 * 120.00296 * 155.00197 * 7 5 2 9 9 H 1.08001 * 119.99507 * 359.97438 * 8 7 5 10 10 C 1.38805 * 120.00216 * 180.02562 * 8 7 5 11 11 N 1.31630 * 120.00105 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00371 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47058 * 90.00037 * 12 10 8 14 14 H 1.48497 * 109.47502 * 210.00009 * 12 10 8 15 15 H 1.48495 * 109.46816 * 330.00232 * 12 10 8 16 16 C 1.53003 * 109.47289 * 60.00118 * 5 2 1 17 17 C 1.53001 * 117.51964 * 116.28130 * 16 5 2 18 18 C 1.52999 * 60.00190 * 107.47982 * 17 16 5 19 19 H 1.08999 * 109.46652 * 299.99884 * 1 2 3 20 20 H 1.08997 * 109.46910 * 59.99648 * 1 2 3 21 21 H 1.08998 * 109.47202 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.46768 * 180.02562 * 3 2 1 23 23 H 1.08996 * 109.46657 * 299.99919 * 3 2 1 24 24 H 1.08998 * 109.47104 * 60.00012 * 3 2 1 25 25 H 1.09008 * 109.47322 * 300.00175 * 4 2 1 26 26 H 1.09004 * 109.47051 * 59.99989 * 4 2 1 27 27 H 1.08996 * 109.47421 * 179.97438 * 4 2 1 28 28 H 0.97005 * 119.99760 * 334.99871 * 7 5 2 29 29 H 0.96994 * 120.00244 * 180.02562 * 11 10 8 30 30 H 1.09002 * 115.54973 * 330.57913 * 16 5 2 31 31 H 1.09001 * 117.49733 * 214.97413 * 17 16 5 32 32 H 1.08995 * 117.49577 * 359.97438 * 17 16 5 33 33 H 1.09004 * 117.50150 * 252.51496 * 18 17 16 34 34 H 1.09004 * 117.49681 * 107.48417 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2492 6 1 1.6768 -0.2074 2.1392 7 7 3.5051 -0.7218 1.2489 8 6 4.1900 -0.8253 2.4301 9 1 3.6501 -0.9061 3.3620 10 6 5.5780 -0.8253 2.4299 11 7 6.2360 -0.7263 1.2941 12 14 6.5124 -0.9657 4.0413 13 1 6.7600 -2.3977 4.3467 14 1 7.8100 -0.2529 3.9250 15 1 5.7101 -0.3582 5.1332 16 6 1.5300 -2.1638 1.2492 17 6 2.5710 -3.2816 1.1612 18 6 1.8371 -3.0217 2.4783 19 1 -0.3632 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 3.1300 1.4425 -0.0005 23 1 1.6767 1.9563 -0.8900 24 1 1.6767 1.9563 0.8900 25 1 1.6766 -1.7490 -1.2493 26 1 1.6766 -0.2074 -2.1392 27 1 3.1300 -0.7209 -1.2496 28 1 3.9899 -0.6489 0.4119 29 1 7.2060 -0.7266 1.2939 30 1 0.5751 -2.3248 0.7489 31 1 2.3009 -4.1780 0.6030 32 1 3.6194 -2.9895 1.1029 33 1 2.4028 -2.5584 3.2868 34 1 1.0842 -3.7471 2.7866 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000324341487.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:45 Heat of formation + Delta-G solvation = 22.698993 kcal Electronic energy + Delta-G solvation = -13469.338873 eV Core-core repulsion = 11402.973780 eV Total energy + Delta-G solvation = -2066.365093 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.53189 -35.00266 -33.20275 -30.15956 -26.91141 -26.68093 -25.72909 -22.83620 -21.38191 -19.93959 -17.91238 -16.94744 -15.22278 -14.54794 -14.23441 -13.77476 -13.59617 -12.86451 -12.65990 -12.15131 -11.79080 -11.70473 -11.14812 -11.06912 -10.91187 -10.80106 -10.53519 -10.32302 -10.20785 -9.97881 -9.93390 -9.44408 -9.22688 -8.91511 -8.80763 -6.87366 -5.71795 -2.98531 3.45819 3.51723 3.52476 4.61149 4.76314 5.33155 5.40996 5.46969 5.62556 5.77629 5.92638 5.94658 5.99820 6.10614 6.13427 6.23560 6.31045 6.36874 6.43872 6.45348 6.51840 6.68223 6.82718 6.84354 6.87757 7.06164 7.12159 7.14858 7.42989 7.77181 8.47963 9.59153 10.18966 10.54274 11.50843 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.036912 B = 0.012715 C = 0.010973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.386834 B = 2201.539384 C = 2550.997703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.071 4.071 3 C -0.133 4.133 4 C -0.135 4.135 5 C 0.213 3.787 6 H 0.047 0.953 7 N -0.716 5.716 8 C -0.228 4.228 9 H 0.068 0.932 10 C -0.014 4.014 11 N -0.934 5.934 12 Si 0.900 3.100 13 H -0.291 1.291 14 H -0.293 1.293 15 H -0.284 1.284 16 C -0.173 4.173 17 C -0.164 4.164 18 C -0.184 4.184 19 H 0.050 0.950 20 H 0.046 0.954 21 H 0.054 0.946 22 H 0.068 0.932 23 H 0.039 0.961 24 H 0.046 0.954 25 H 0.052 0.948 26 H 0.039 0.961 27 H 0.062 0.938 28 H 0.385 0.615 29 H 0.253 0.747 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.121 0.879 33 H 0.096 0.904 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.661 -0.254 -2.587 10.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.071 4.071 3 C -0.190 4.190 4 C -0.192 4.192 5 C 0.103 3.897 6 H 0.065 0.935 7 N -0.357 5.357 8 C -0.360 4.360 9 H 0.086 0.914 10 C -0.210 4.210 11 N -0.583 5.583 12 Si 0.732 3.268 13 H -0.219 1.219 14 H -0.220 1.220 15 H -0.209 1.209 16 C -0.194 4.194 17 C -0.201 4.201 18 C -0.221 4.221 19 H 0.069 0.931 20 H 0.065 0.935 21 H 0.073 0.927 22 H 0.087 0.913 23 H 0.058 0.942 24 H 0.065 0.935 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.081 0.919 28 H 0.221 0.779 29 H 0.063 0.937 30 H 0.103 0.897 31 H 0.083 0.917 32 H 0.139 0.861 33 H 0.114 0.886 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.577 -0.238 -2.407 9.878 hybrid contribution 0.705 -0.211 0.672 0.996 sum -8.872 -0.449 -1.736 9.051 Atomic orbital electron populations 1.21904 0.95671 1.01241 1.00775 1.20710 0.94269 0.95750 0.96405 1.21768 1.02582 0.94883 0.99791 1.21789 1.01886 0.99654 0.95880 1.19738 0.85562 0.90163 0.94239 0.93531 1.42506 0.99049 1.87281 1.06895 1.19202 0.88823 1.41354 0.86589 0.91375 1.24667 0.96401 1.03468 0.96457 1.69652 1.06709 1.57947 1.23964 0.86281 0.79586 0.77478 0.83447 1.21888 1.21964 1.20936 1.23315 0.98682 0.95795 1.01578 1.22918 1.00604 0.97530 0.99055 1.22818 1.03195 1.03125 0.92969 0.93118 0.93500 0.92705 0.91308 0.94235 0.93467 0.92877 0.94143 0.91939 0.77944 0.93665 0.89711 0.91705 0.86128 0.88561 0.91298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 8.23 37.16 0.31 -1.64 16 2 C -0.07 -1.19 0.59 -154.51 -0.09 -1.28 16 3 C -0.13 -2.28 8.32 37.16 0.31 -1.97 16 4 C -0.13 -2.23 8.06 37.16 0.30 -1.93 16 5 C 0.21 4.23 1.95 -67.93 -0.13 4.10 16 6 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 7 N -0.72 -17.07 2.99 -53.43 -0.16 -17.23 16 8 C -0.23 -6.09 8.09 -15.06 -0.12 -6.21 16 9 H 0.07 1.81 6.90 -52.49 -0.36 1.45 16 10 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 11 N -0.93 -27.63 13.06 55.49 0.72 -26.90 16 12 Si 0.90 22.35 29.55 -169.99 -5.02 17.33 16 13 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 14 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 15 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 16 C -0.17 -3.19 4.25 -90.61 -0.39 -3.57 16 17 C -0.16 -3.24 9.69 -26.73 -0.26 -3.50 16 18 C -0.18 -3.48 9.88 -26.73 -0.26 -3.74 16 19 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 20 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 21 H 0.05 0.74 6.14 -51.93 -0.32 0.42 16 22 H 0.07 1.36 7.45 -51.93 -0.39 0.98 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.05 0.86 7.20 -51.92 -0.37 0.49 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.06 1.18 6.50 -51.93 -0.34 0.84 16 28 H 0.39 9.83 5.85 -40.82 -0.24 9.59 16 29 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.08 1.41 6.06 -51.93 -0.31 1.10 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.12 2.87 6.42 -51.93 -0.33 2.53 16 33 H 0.10 2.02 6.55 -51.93 -0.34 1.68 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 263.93 15.07 3.98 3.98 Total: -1.00 -27.77 263.93 -6.44 -34.20 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -5.52 Total: 8.88 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: -0.44 Total: -20.26 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: 0.57 Total: -44.13 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -27.77 -6.44 -34.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000324341487.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.901 kcal (2) G-P(sol) polarization free energy of solvation -27.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds