Wall clock time and date at job start Mon Mar 30 2020 02:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.47028 * 2 1 4 4 C 1.52998 * 109.46885 * 240.00025 * 2 1 3 5 5 C 1.52995 * 109.46950 * 120.00042 * 2 1 3 6 6 H 1.08999 * 109.47504 * 299.99553 * 5 2 1 7 7 N 1.46505 * 109.47041 * 179.97438 * 5 2 1 8 8 C 1.36934 * 120.00296 * 155.00197 * 7 5 2 9 9 H 1.08001 * 119.99507 * 359.97438 * 8 7 5 10 10 C 1.38805 * 120.00216 * 180.02562 * 8 7 5 11 11 N 1.31630 * 120.00105 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00371 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47058 * 90.00037 * 12 10 8 14 14 H 1.48497 * 109.47502 * 210.00009 * 12 10 8 15 15 H 1.48495 * 109.46816 * 330.00232 * 12 10 8 16 16 C 1.53003 * 109.47289 * 60.00118 * 5 2 1 17 17 C 1.53001 * 117.51964 * 116.28130 * 16 5 2 18 18 C 1.52999 * 60.00190 * 107.47982 * 17 16 5 19 19 H 1.08999 * 109.46652 * 299.99884 * 1 2 3 20 20 H 1.08997 * 109.46910 * 59.99648 * 1 2 3 21 21 H 1.08998 * 109.47202 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.46768 * 180.02562 * 3 2 1 23 23 H 1.08996 * 109.46657 * 299.99919 * 3 2 1 24 24 H 1.08998 * 109.47104 * 60.00012 * 3 2 1 25 25 H 1.09008 * 109.47322 * 300.00175 * 4 2 1 26 26 H 1.09004 * 109.47051 * 59.99989 * 4 2 1 27 27 H 1.08996 * 109.47421 * 179.97438 * 4 2 1 28 28 H 0.97005 * 119.99760 * 334.99871 * 7 5 2 29 29 H 0.96994 * 120.00244 * 180.02562 * 11 10 8 30 30 H 1.09002 * 115.54973 * 330.57913 * 16 5 2 31 31 H 1.09001 * 117.49733 * 214.97413 * 17 16 5 32 32 H 1.08995 * 117.49577 * 359.97438 * 17 16 5 33 33 H 1.09004 * 117.50150 * 252.51496 * 18 17 16 34 34 H 1.09004 * 117.49681 * 107.48417 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2492 6 1 1.6768 -0.2074 2.1392 7 7 3.5051 -0.7218 1.2489 8 6 4.1900 -0.8253 2.4301 9 1 3.6501 -0.9061 3.3620 10 6 5.5780 -0.8253 2.4299 11 7 6.2360 -0.7263 1.2941 12 14 6.5124 -0.9657 4.0413 13 1 6.7600 -2.3977 4.3467 14 1 7.8100 -0.2529 3.9250 15 1 5.7101 -0.3582 5.1332 16 6 1.5300 -2.1638 1.2492 17 6 2.5710 -3.2816 1.1612 18 6 1.8371 -3.0217 2.4783 19 1 -0.3632 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 3.1300 1.4425 -0.0005 23 1 1.6767 1.9563 -0.8900 24 1 1.6767 1.9563 0.8900 25 1 1.6766 -1.7490 -1.2493 26 1 1.6766 -0.2074 -2.1392 27 1 3.1300 -0.7209 -1.2496 28 1 3.9899 -0.6489 0.4119 29 1 7.2060 -0.7266 1.2939 30 1 0.5751 -2.3248 0.7489 31 1 2.3009 -4.1780 0.6030 32 1 3.6194 -2.9895 1.1029 33 1 2.4028 -2.5584 3.2868 34 1 1.0842 -3.7471 2.7866 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000324341487.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:45 Heat of formation + Delta-G solvation = 7.498589 kcal Electronic energy + Delta-G solvation = -13469.998012 eV Core-core repulsion = 11402.973780 eV Total energy + Delta-G solvation = -2067.024232 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.06867 -36.45208 -35.17217 -32.10680 -28.20951 -28.03853 -27.46793 -24.74319 -22.94832 -21.42209 -19.60014 -18.78917 -16.75002 -16.44768 -15.91195 -15.43802 -15.14638 -14.31785 -14.31259 -13.73566 -13.29204 -12.98771 -12.86378 -12.75369 -12.54473 -12.40519 -12.18711 -12.04584 -11.86669 -11.54758 -11.44009 -11.19681 -10.90383 -10.68677 -10.44429 -8.88543 -7.87086 -5.11328 1.46161 1.46743 1.54152 2.59218 3.19065 3.46881 3.90065 4.03471 4.12214 4.31686 4.37068 4.44357 4.49583 4.77217 4.85985 4.88965 4.95529 4.98159 5.05779 5.09511 5.16619 5.25827 5.35670 5.36691 5.46034 5.50849 5.63836 5.69003 5.73727 5.77928 6.36212 7.42937 8.22577 8.45831 9.36524 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.036912 B = 0.012715 C = 0.010973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.386834 B = 2201.539384 C = 2550.997703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.068 4.068 3 C -0.129 4.129 4 C -0.129 4.129 5 C 0.206 3.794 6 H 0.034 0.966 7 N -0.721 5.721 8 C -0.213 4.213 9 H 0.068 0.932 10 C -0.075 4.075 11 N -0.969 5.969 12 Si 0.957 3.043 13 H -0.293 1.293 14 H -0.300 1.300 15 H -0.274 1.274 16 C -0.159 4.159 17 C -0.173 4.173 18 C -0.181 4.181 19 H 0.054 0.946 20 H 0.067 0.933 21 H 0.065 0.935 22 H 0.031 0.969 23 H 0.065 0.935 24 H 0.046 0.954 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.029 0.971 28 H 0.375 0.625 29 H 0.246 0.754 30 H 0.117 0.883 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.103 -0.542 -2.720 12.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.068 4.068 3 C -0.187 4.187 4 C -0.187 4.187 5 C 0.097 3.903 6 H 0.052 0.948 7 N -0.361 5.361 8 C -0.346 4.346 9 H 0.086 0.914 10 C -0.267 4.267 11 N -0.621 5.621 12 Si 0.788 3.212 13 H -0.220 1.220 14 H -0.227 1.227 15 H -0.199 1.199 16 C -0.180 4.180 17 C -0.210 4.210 18 C -0.218 4.218 19 H 0.073 0.927 20 H 0.086 0.914 21 H 0.083 0.917 22 H 0.050 0.950 23 H 0.084 0.916 24 H 0.065 0.935 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.048 0.952 28 H 0.209 0.791 29 H 0.055 0.945 30 H 0.135 0.865 31 H 0.107 0.893 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.070 -0.525 -2.522 12.342 hybrid contribution 1.389 -0.112 0.704 1.561 sum -10.682 -0.637 -1.818 10.854 Atomic orbital electron populations 1.21844 0.92623 1.02361 1.02105 1.20695 0.96548 0.94847 0.94750 1.21720 1.00171 0.95701 1.01059 1.21733 0.99788 1.00349 0.96809 1.19976 0.83207 0.91582 0.95523 0.94813 1.42615 1.00892 1.87040 1.05537 1.19454 0.89026 1.38566 0.87511 0.91419 1.25314 0.97441 1.04989 0.98977 1.69798 1.06250 1.60389 1.25685 0.85364 0.78126 0.77068 0.80646 1.22025 1.22661 1.19884 1.23267 0.99272 0.94093 1.01325 1.22746 0.98480 0.99173 1.00614 1.22829 1.03356 1.03722 0.91935 0.92689 0.91381 0.91652 0.94976 0.91638 0.93510 0.92309 0.91703 0.95171 0.79105 0.94466 0.86486 0.89257 0.90637 0.91248 0.88080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 8.23 71.98 0.59 -2.58 16 2 C -0.07 -2.14 0.59 -52.18 -0.03 -2.17 16 3 C -0.13 -4.27 8.32 71.98 0.60 -3.67 16 4 C -0.13 -4.06 8.06 71.98 0.58 -3.48 16 5 C 0.21 7.97 1.95 44.99 0.09 8.05 16 6 H 0.03 1.40 8.08 -2.39 -0.02 1.38 16 7 N -0.72 -35.03 2.99 -322.94 -0.96 -36.00 16 8 C -0.21 -11.59 8.09 84.03 0.68 -10.91 16 9 H 0.07 3.63 6.90 -2.91 -0.02 3.61 16 10 C -0.08 -4.32 5.50 84.86 0.47 -3.86 16 11 N -0.97 -59.34 13.06 21.65 0.28 -59.06 16 12 Si 0.96 46.97 29.55 68.60 2.03 48.99 16 13 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 14 H -0.30 -14.92 7.11 99.48 0.71 -14.21 16 15 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 16 C -0.16 -5.51 4.25 -10.79 -0.05 -5.55 16 17 C -0.17 -6.65 9.69 30.59 0.30 -6.35 16 18 C -0.18 -6.51 9.88 30.60 0.30 -6.21 16 19 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 20 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 21 H 0.06 1.45 6.14 -2.39 -0.01 1.43 16 22 H 0.03 1.28 7.45 -2.39 -0.02 1.26 16 23 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.06 1.75 7.20 -2.38 -0.02 1.74 16 26 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.03 1.13 6.50 -2.39 -0.02 1.11 16 28 H 0.38 19.85 5.85 -92.70 -0.54 19.30 16 29 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 30 H 0.12 3.36 6.06 -2.39 -0.01 3.35 16 31 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 32 H 0.08 3.66 6.42 -2.39 -0.02 3.65 16 33 H 0.07 2.87 6.55 -2.39 -0.02 2.85 16 34 H 0.10 2.99 8.14 -2.38 -0.02 2.97 16 Total: -1.00 -60.81 263.93 5.40 -55.42 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: 0.52 Total: 27.38 kcal Atomic # 6 Polarization: -40.26 SS G_CDS: 3.53 Total: -36.73 kcal Atomic # 7 Polarization: -94.38 SS G_CDS: -0.68 Total: -95.06 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 48.99 kcal Total: -60.81 5.40 -55.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000324341487.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.918 kcal (2) G-P(sol) polarization free energy of solvation -60.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds