Wall clock time and date at job start Mon Mar 30 2020 02:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46873 * 2 1 4 4 C 1.52994 * 109.47270 * 240.00200 * 2 1 3 5 5 C 1.52999 * 109.47028 * 119.99765 * 2 1 3 6 6 H 1.08998 * 109.47024 * 300.00169 * 5 2 1 7 7 N 1.46502 * 109.47131 * 60.00325 * 5 2 1 8 8 C 1.36932 * 119.99754 * 225.30890 * 7 5 2 9 9 H 1.07997 * 120.00157 * 0.26699 * 8 7 5 10 10 C 1.38813 * 119.99855 * 180.27540 * 8 7 5 11 11 N 1.31618 * 120.00237 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00123 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47083 * 359.97438 * 12 10 8 14 14 H 1.48507 * 109.47094 * 119.99691 * 12 10 8 15 15 H 1.48503 * 109.47472 * 239.99861 * 12 10 8 16 16 C 1.53003 * 109.47028 * 180.02562 * 5 2 1 17 17 C 1.53000 * 117.49889 * 244.43252 * 16 5 2 18 18 C 1.53001 * 117.49690 * 175.76974 * 16 5 2 19 19 H 1.08998 * 109.47356 * 300.00269 * 1 2 3 20 20 H 1.08999 * 109.46871 * 59.99965 * 1 2 3 21 21 H 1.08993 * 109.47009 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47118 * 179.97438 * 3 2 1 23 23 H 1.08999 * 109.47401 * 299.99710 * 3 2 1 24 24 H 1.08998 * 109.47350 * 59.99727 * 3 2 1 25 25 H 1.09007 * 109.46869 * 299.99583 * 4 2 1 26 26 H 1.08996 * 109.47254 * 59.99584 * 4 2 1 27 27 H 1.09001 * 109.47389 * 180.02562 * 4 2 1 28 28 H 0.96996 * 120.00119 * 45.57746 * 7 5 2 29 29 H 0.96995 * 120.00242 * 180.02562 * 11 10 8 30 30 H 1.09003 * 115.54828 * 30.10527 * 16 5 2 31 31 H 1.08997 * 117.49950 * 359.97438 * 17 16 5 32 32 H 1.08999 * 117.49506 * 145.02532 * 17 16 5 33 33 H 1.08996 * 117.49959 * 214.97729 * 18 16 5 34 34 H 1.08999 * 117.49842 * 359.97438 * 18 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2493 6 1 1.6766 -0.2073 2.1392 7 7 1.5517 -2.1025 1.2493 8 6 1.0283 -2.6435 2.3931 9 1 0.9715 -2.0507 3.2940 10 6 0.5709 -3.9541 2.3947 11 7 0.6398 -4.6766 1.2966 12 14 -0.1425 -4.6926 3.9552 13 1 -0.1070 -3.6816 5.0423 14 1 -1.5473 -5.1068 3.7095 15 1 0.6601 -5.8765 4.3545 16 6 3.5700 -0.7206 1.2496 17 6 4.2770 -2.0734 1.1447 18 6 4.2764 -1.3105 2.4719 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 3.1299 1.4426 0.0005 23 1 1.6767 1.9564 -0.8900 24 1 1.6766 1.9564 0.8899 25 1 1.6767 -1.7489 -1.2492 26 1 1.6767 -0.2074 -2.1392 27 1 3.1301 -0.7216 -1.2490 28 1 1.6028 -2.6349 0.4401 29 1 0.3199 -5.5922 1.2976 30 1 4.0399 0.1322 0.7596 31 1 3.6521 -2.9639 1.0759 32 1 5.2122 -2.1105 0.5861 33 1 5.2112 -0.8462 2.7857 34 1 3.6511 -1.6986 3.2759 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000324341488.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:46 Heat of formation + Delta-G solvation = 21.578329 kcal Electronic energy + Delta-G solvation = -13441.028673 eV Core-core repulsion = 11374.614984 eV Total energy + Delta-G solvation = -2066.413689 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.49766 -34.97537 -33.26809 -30.17509 -26.86578 -26.64570 -25.67583 -22.90802 -21.45526 -19.93341 -17.83228 -17.00441 -15.26134 -14.67460 -14.14214 -13.75646 -13.60239 -12.88693 -12.73620 -11.98583 -11.77648 -11.66838 -11.11006 -11.02622 -10.88563 -10.75737 -10.57116 -10.35760 -10.17115 -10.02029 -9.95949 -9.48253 -9.31074 -8.98591 -8.81811 -6.89312 -5.72546 -2.99128 3.44961 3.51348 3.52880 4.59107 4.70960 5.34230 5.43778 5.51168 5.63255 5.76284 5.88298 5.89906 5.97857 6.13164 6.15002 6.27457 6.34749 6.39453 6.39943 6.43996 6.55954 6.68164 6.81088 6.85193 6.90860 7.04232 7.13697 7.19271 7.28380 7.75560 8.46888 9.58269 10.17939 10.53141 11.50127 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.034993 B = 0.012698 C = 0.011000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.963693 B = 2204.583184 C = 2544.855762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.076 4.076 3 C -0.139 4.139 4 C -0.134 4.134 5 C 0.212 3.788 6 H 0.057 0.943 7 N -0.713 5.713 8 C -0.231 4.231 9 H 0.068 0.932 10 C -0.014 4.014 11 N -0.933 5.933 12 Si 0.901 3.099 13 H -0.282 1.282 14 H -0.293 1.293 15 H -0.293 1.293 16 C -0.171 4.171 17 C -0.169 4.169 18 C -0.181 4.181 19 H 0.044 0.956 20 H 0.035 0.965 21 H 0.070 0.930 22 H 0.053 0.947 23 H 0.044 0.956 24 H 0.049 0.951 25 H 0.061 0.939 26 H 0.039 0.961 27 H 0.050 0.950 28 H 0.385 0.615 29 H 0.253 0.747 30 H 0.087 0.913 31 H 0.115 0.885 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.799 8.947 -2.425 10.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.077 4.077 3 C -0.196 4.196 4 C -0.192 4.192 5 C 0.101 3.899 6 H 0.075 0.925 7 N -0.354 5.354 8 C -0.362 4.362 9 H 0.086 0.914 10 C -0.210 4.210 11 N -0.582 5.582 12 Si 0.733 3.267 13 H -0.207 1.207 14 H -0.221 1.221 15 H -0.221 1.221 16 C -0.192 4.192 17 C -0.206 4.206 18 C -0.218 4.218 19 H 0.063 0.937 20 H 0.055 0.945 21 H 0.089 0.911 22 H 0.072 0.928 23 H 0.064 0.936 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.221 0.779 29 H 0.063 0.937 30 H 0.105 0.895 31 H 0.133 0.867 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.708 8.890 -2.241 9.889 hybrid contribution -0.281 -0.665 0.618 0.950 sum 3.427 8.225 -1.622 9.057 Atomic orbital electron populations 1.21724 0.94728 1.02842 0.99434 1.20876 0.95717 0.94226 0.96898 1.21915 1.00670 0.96376 1.00678 1.21773 1.00466 1.00893 0.96034 1.19755 0.88562 0.87042 0.94495 0.92491 1.42491 1.72235 1.08606 1.12035 1.19309 1.31769 0.95031 0.90088 0.91387 1.24670 1.02456 0.96924 0.96935 1.69657 1.53226 1.09203 1.26139 0.86201 0.78509 0.79041 0.82978 1.20701 1.22072 1.22075 1.23288 0.97991 0.96228 1.01675 1.22916 1.00669 0.97642 0.99349 1.22761 1.00995 1.05250 0.92756 0.93694 0.94541 0.91079 0.92835 0.93641 0.93209 0.91985 0.94231 0.93067 0.77933 0.93703 0.89480 0.86670 0.91356 0.91051 0.88675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.30 8.32 37.16 0.31 -1.99 16 2 C -0.08 -1.29 0.62 -154.51 -0.10 -1.38 16 3 C -0.14 -1.98 8.23 37.16 0.31 -1.67 16 4 C -0.13 -2.25 8.03 37.15 0.30 -1.95 16 5 C 0.21 4.19 1.99 -67.93 -0.14 4.05 16 6 H 0.06 1.19 7.85 -51.93 -0.41 0.78 16 7 N -0.71 -16.96 2.57 -53.43 -0.14 -17.10 16 8 C -0.23 -6.18 9.92 -15.06 -0.15 -6.32 16 9 H 0.07 1.81 7.71 -52.49 -0.40 1.41 16 10 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 11 N -0.93 -27.63 13.06 55.49 0.72 -26.90 16 12 Si 0.90 22.35 29.55 -169.99 -5.02 17.33 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 14 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 15 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 16 C -0.17 -3.09 4.25 -90.62 -0.38 -3.48 16 17 C -0.17 -3.23 9.84 -26.69 -0.26 -3.49 16 18 C -0.18 -3.33 10.22 -26.69 -0.27 -3.60 16 19 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 20 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 21 H 0.07 1.47 7.60 -51.93 -0.39 1.08 16 22 H 0.05 0.73 6.14 -51.93 -0.32 0.41 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.06 1.18 6.61 -51.93 -0.34 0.84 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.82 7.21 -51.93 -0.37 0.45 16 28 H 0.39 9.84 5.96 -40.82 -0.24 9.60 16 29 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.09 1.42 6.06 -51.93 -0.31 1.10 16 31 H 0.12 2.64 6.74 -51.93 -0.35 2.29 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.09 1.96 8.14 -51.93 -0.42 1.54 16 LS Contribution 268.75 15.07 4.05 4.05 Total: -1.00 -27.74 268.75 -6.54 -34.28 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -5.67 Total: 8.67 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: -0.48 Total: -20.33 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: 0.59 Total: -44.00 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -27.74 -6.54 -34.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000324341488.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.857 kcal (2) G-P(sol) polarization free energy of solvation -27.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds