Wall clock time and date at job start Mon Mar 30 2020 02:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46873 * 2 1 4 4 C 1.52994 * 109.47270 * 240.00200 * 2 1 3 5 5 C 1.52999 * 109.47028 * 119.99765 * 2 1 3 6 6 H 1.08998 * 109.47024 * 300.00169 * 5 2 1 7 7 N 1.46502 * 109.47131 * 60.00325 * 5 2 1 8 8 C 1.36932 * 119.99754 * 225.30890 * 7 5 2 9 9 H 1.07997 * 120.00157 * 0.26699 * 8 7 5 10 10 C 1.38813 * 119.99855 * 180.27540 * 8 7 5 11 11 N 1.31618 * 120.00237 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00123 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47083 * 359.97438 * 12 10 8 14 14 H 1.48507 * 109.47094 * 119.99691 * 12 10 8 15 15 H 1.48503 * 109.47472 * 239.99861 * 12 10 8 16 16 C 1.53003 * 109.47028 * 180.02562 * 5 2 1 17 17 C 1.53000 * 117.49889 * 244.43252 * 16 5 2 18 18 C 1.53001 * 117.49690 * 175.76974 * 16 5 2 19 19 H 1.08998 * 109.47356 * 300.00269 * 1 2 3 20 20 H 1.08999 * 109.46871 * 59.99965 * 1 2 3 21 21 H 1.08993 * 109.47009 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47118 * 179.97438 * 3 2 1 23 23 H 1.08999 * 109.47401 * 299.99710 * 3 2 1 24 24 H 1.08998 * 109.47350 * 59.99727 * 3 2 1 25 25 H 1.09007 * 109.46869 * 299.99583 * 4 2 1 26 26 H 1.08996 * 109.47254 * 59.99584 * 4 2 1 27 27 H 1.09001 * 109.47389 * 180.02562 * 4 2 1 28 28 H 0.96996 * 120.00119 * 45.57746 * 7 5 2 29 29 H 0.96995 * 120.00242 * 180.02562 * 11 10 8 30 30 H 1.09003 * 115.54828 * 30.10527 * 16 5 2 31 31 H 1.08997 * 117.49950 * 359.97438 * 17 16 5 32 32 H 1.08999 * 117.49506 * 145.02532 * 17 16 5 33 33 H 1.08996 * 117.49959 * 214.97729 * 18 16 5 34 34 H 1.08999 * 117.49842 * 359.97438 * 18 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2493 6 1 1.6766 -0.2073 2.1392 7 7 1.5517 -2.1025 1.2493 8 6 1.0283 -2.6435 2.3931 9 1 0.9715 -2.0507 3.2940 10 6 0.5709 -3.9541 2.3947 11 7 0.6398 -4.6766 1.2966 12 14 -0.1425 -4.6926 3.9552 13 1 -0.1070 -3.6816 5.0423 14 1 -1.5473 -5.1068 3.7095 15 1 0.6601 -5.8765 4.3545 16 6 3.5700 -0.7206 1.2496 17 6 4.2770 -2.0734 1.1447 18 6 4.2764 -1.3105 2.4719 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 3.1299 1.4426 0.0005 23 1 1.6767 1.9564 -0.8900 24 1 1.6766 1.9564 0.8899 25 1 1.6767 -1.7489 -1.2492 26 1 1.6767 -0.2074 -2.1392 27 1 3.1301 -0.7216 -1.2490 28 1 1.6028 -2.6349 0.4401 29 1 0.3199 -5.5922 1.2976 30 1 4.0399 0.1322 0.7596 31 1 3.6521 -2.9639 1.0759 32 1 5.2122 -2.1105 0.5861 33 1 5.2112 -0.8462 2.7857 34 1 3.6511 -1.6986 3.2759 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000324341488.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:46 Heat of formation + Delta-G solvation = 6.759790 kcal Electronic energy + Delta-G solvation = -13441.671253 eV Core-core repulsion = 11374.614984 eV Total energy + Delta-G solvation = -2067.056269 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.02658 -36.41212 -35.23650 -32.12744 -28.18383 -28.03900 -27.40522 -24.81214 -22.98239 -21.40632 -19.50972 -18.87446 -16.72244 -16.54611 -15.89253 -15.44978 -15.10914 -14.43356 -14.30023 -13.57862 -13.29774 -12.96193 -12.88426 -12.74386 -12.47629 -12.33382 -12.11519 -12.07065 -11.99364 -11.64071 -11.42924 -11.20550 -10.94762 -10.71526 -10.47020 -8.89451 -7.88123 -5.12106 1.45400 1.46430 1.55005 2.58623 3.15907 3.45841 3.90374 4.04446 4.13868 4.32302 4.36689 4.42848 4.47733 4.77698 4.87446 4.90314 4.94370 4.97539 5.07198 5.09587 5.17235 5.25372 5.33718 5.37711 5.48034 5.53650 5.59012 5.66533 5.71594 5.78647 6.34969 7.41667 8.21807 8.44804 9.35562 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.034993 B = 0.012698 C = 0.011000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.963693 B = 2204.583184 C = 2544.855762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.073 4.073 3 C -0.132 4.132 4 C -0.129 4.129 5 C 0.205 3.795 6 H 0.044 0.956 7 N -0.718 5.718 8 C -0.219 4.219 9 H 0.067 0.933 10 C -0.075 4.075 11 N -0.968 5.968 12 Si 0.959 3.041 13 H -0.270 1.270 14 H -0.298 1.298 15 H -0.299 1.299 16 C -0.158 4.158 17 C -0.175 4.175 18 C -0.178 4.178 19 H 0.043 0.957 20 H 0.060 0.940 21 H 0.030 0.970 22 H 0.065 0.935 23 H 0.064 0.936 24 H 0.053 0.947 25 H 0.028 0.972 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.375 0.625 29 H 0.247 0.753 30 H 0.120 0.880 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.825 11.195 -2.565 12.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.074 4.074 3 C -0.190 4.190 4 C -0.186 4.186 5 C 0.096 3.904 6 H 0.062 0.938 7 N -0.357 5.357 8 C -0.351 4.351 9 H 0.085 0.915 10 C -0.267 4.267 11 N -0.620 5.620 12 Si 0.790 3.210 13 H -0.194 1.194 14 H -0.225 1.225 15 H -0.226 1.226 16 C -0.179 4.179 17 C -0.213 4.213 18 C -0.215 4.215 19 H 0.063 0.937 20 H 0.079 0.921 21 H 0.050 0.950 22 H 0.084 0.916 23 H 0.083 0.917 24 H 0.072 0.928 25 H 0.047 0.953 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.209 0.791 29 H 0.056 0.944 30 H 0.138 0.862 31 H 0.089 0.911 32 H 0.113 0.887 33 H 0.122 0.878 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.746 11.191 -2.365 12.384 hybrid contribution -0.585 -1.294 0.652 1.562 sum 4.161 9.898 -1.713 10.872 Atomic orbital electron populations 1.21671 0.95467 1.00553 1.00638 1.20832 0.95117 0.96076 0.95379 1.21848 1.01411 0.93764 1.01939 1.21718 1.00939 0.99141 0.96834 1.19995 0.89874 0.84941 0.95587 0.93787 1.42572 1.72270 1.10215 1.10662 1.19577 1.29827 0.94876 0.90838 0.91459 1.25326 1.04213 0.97704 0.99449 1.69801 1.55207 1.09107 1.27933 0.85270 0.77244 0.78157 0.80361 1.19423 1.22532 1.22632 1.23235 0.96508 0.96604 1.01508 1.22771 1.01314 0.96461 1.00722 1.22770 1.01973 1.05050 0.91699 0.93748 0.92064 0.95047 0.91566 0.91660 0.92779 0.95272 0.91979 0.92177 0.79121 0.94442 0.86205 0.91054 0.88721 0.87757 0.91629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.32 8.32 71.98 0.60 -3.72 16 2 C -0.07 -2.33 0.62 -52.18 -0.03 -2.36 16 3 C -0.13 -3.22 8.23 71.98 0.59 -2.63 16 4 C -0.13 -4.08 8.03 71.98 0.58 -3.50 16 5 C 0.21 7.91 1.99 44.99 0.09 8.00 16 6 H 0.04 1.81 7.85 -2.39 -0.02 1.79 16 7 N -0.72 -34.87 2.57 -322.94 -0.83 -35.70 16 8 C -0.22 -11.96 9.92 84.03 0.83 -11.13 16 9 H 0.07 3.63 7.71 -2.91 -0.02 3.60 16 10 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 11 N -0.97 -59.37 13.06 21.65 0.28 -59.09 16 12 Si 0.96 46.98 29.55 68.60 2.03 49.01 16 13 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 14 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 15 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 16 C -0.16 -5.35 4.25 -10.79 -0.05 -5.40 16 17 C -0.18 -6.52 9.84 30.62 0.30 -6.22 16 18 C -0.18 -6.23 10.22 30.62 0.31 -5.92 16 19 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 20 H 0.06 1.76 8.14 -2.39 -0.02 1.75 16 21 H 0.03 1.30 7.60 -2.39 -0.02 1.28 16 22 H 0.07 1.46 6.14 -2.39 -0.01 1.45 16 23 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.03 1.10 6.61 -2.38 -0.02 1.08 16 26 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.06 1.77 7.21 -2.39 -0.02 1.76 16 28 H 0.38 19.88 5.96 -92.71 -0.55 19.33 16 29 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 30 H 0.12 3.34 6.06 -2.39 -0.01 3.33 16 31 H 0.07 3.35 6.74 -2.39 -0.02 3.33 16 32 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 33 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 34 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -60.93 268.75 5.68 -55.26 By element: Atomic # 1 Polarization: 26.75 SS G_CDS: 0.50 Total: 27.25 kcal Atomic # 6 Polarization: -40.42 SS G_CDS: 3.70 Total: -36.73 kcal Atomic # 7 Polarization: -94.24 SS G_CDS: -0.55 Total: -94.79 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Total: -60.93 5.68 -55.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000324341488.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.015 kcal (2) G-P(sol) polarization free energy of solvation -60.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds