Wall clock time and date at job start Mon Mar 30 2020 01:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46893 * 111.00474 * 2 1 4 4 C 1.50704 * 109.47051 * 66.04516 * 3 2 1 5 5 H 1.07997 * 119.99889 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00015 * 180.02562 * 4 3 2 7 7 N 1.31511 * 119.99853 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00128 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.46955 * 89.99616 * 8 6 4 10 10 H 1.48494 * 109.47441 * 210.00335 * 8 6 4 11 11 H 1.48504 * 109.46689 * 330.00075 * 8 6 4 12 12 C 1.46905 * 110.99478 * 236.04453 * 2 1 3 13 13 C 1.52999 * 109.47293 * 298.42423 * 12 2 1 14 14 C 1.52996 * 112.84980 * 307.12571 * 13 12 2 15 15 C 1.53782 * 113.68872 * 78.39372 * 13 12 2 16 16 C 1.53789 * 87.07981 * 89.12514 * 15 13 12 17 17 C 1.53780 * 87.08202 * 25.43030 * 16 15 13 18 18 H 1.08996 * 109.47188 * 195.16710 * 1 2 3 19 19 H 1.08994 * 109.46566 * 315.17052 * 1 2 3 20 20 H 1.09005 * 109.46724 * 75.16662 * 1 2 3 21 21 H 1.08995 * 109.47759 * 186.04980 * 3 2 1 22 22 H 1.09007 * 109.47142 * 306.04716 * 3 2 1 23 23 H 0.97004 * 119.99738 * 179.97438 * 7 6 4 24 24 H 1.09001 * 109.46613 * 178.42503 * 12 2 1 25 25 H 1.08993 * 109.47352 * 58.43160 * 12 2 1 26 26 H 1.08998 * 109.47375 * 288.80075 * 14 13 12 27 27 H 1.09001 * 109.46957 * 168.80477 * 14 13 12 28 28 H 1.08996 * 109.47143 * 48.80464 * 14 13 12 29 29 H 1.09000 * 113.61605 * 203.67423 * 15 13 12 30 30 H 1.08998 * 113.61470 * 334.57901 * 15 13 12 31 31 H 1.09002 * 113.61397 * 270.88265 * 16 15 13 32 32 H 1.08995 * 113.68726 * 139.99140 * 16 15 13 33 33 H 1.08994 * 113.61682 * 220.01697 * 17 16 15 34 34 H 1.09007 * 113.61241 * 89.11038 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9956 1.3713 0.0000 4 6 1.6371 2.0471 1.2985 5 1 1.0748 1.5112 2.0488 6 6 2.0270 3.3494 1.5285 7 7 2.7114 4.0020 0.6146 8 14 1.5833 4.1867 3.1383 9 1 2.6607 3.9505 4.1325 10 1 1.4304 5.6463 2.9114 11 1 0.3059 3.6290 3.6506 12 6 1.9954 -0.7661 -1.1376 13 6 1.5371 -2.2217 -1.0281 14 6 1.8686 -2.8485 0.3276 15 6 0.0817 -2.4462 -1.4713 16 6 0.6311 -2.6703 -2.8901 17 6 1.9535 -3.0904 -2.2269 18 1 -0.3633 -0.9918 0.2689 19 1 -0.3632 0.7288 0.7245 20 1 -0.3633 0.2631 -0.9935 21 1 3.0798 1.3443 -0.1083 22 1 1.5613 1.9273 -0.8310 23 1 2.9854 4.9184 0.7763 24 1 3.0847 -0.7265 -1.1294 25 1 1.6233 -0.3370 -2.0679 26 1 2.9442 -3.0092 0.4004 27 1 1.3514 -3.8033 0.4226 28 1 1.5464 -2.1797 1.1257 29 1 -0.3755 -3.3342 -1.0348 30 1 -0.5442 -1.5585 -1.3806 31 1 0.7087 -1.7556 -3.4778 32 1 0.1366 -3.4787 -3.4285 33 1 2.8385 -2.7227 -2.7461 34 1 2.0079 -4.1545 -1.9969 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379321750.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:35 Heat of formation + Delta-G solvation = 18.039471 kcal Electronic energy + Delta-G solvation = -13059.644756 eV Core-core repulsion = 10993.077610 eV Total energy + Delta-G solvation = -2066.567146 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.57921 -35.62194 -32.43928 -29.69742 -27.36317 -26.99967 -25.03476 -23.86879 -22.00857 -20.28208 -17.95008 -16.18586 -15.12458 -15.06932 -14.59141 -14.06764 -13.64776 -13.24279 -12.91402 -12.33418 -12.15662 -11.88949 -11.44296 -11.14970 -11.05517 -10.91511 -10.74348 -10.70309 -10.46485 -10.10414 -9.94158 -9.64003 -9.47375 -9.09665 -8.40782 -7.14492 -5.99885 -4.00890 3.33886 3.39537 3.43242 4.44234 4.77763 4.87831 4.96046 5.06979 5.32650 5.38429 5.61796 5.83371 5.87998 5.92034 6.04868 6.13926 6.16758 6.18984 6.23822 6.38944 6.41925 6.44791 6.62816 6.74519 6.84384 6.91888 7.35536 7.40270 7.84689 8.14655 8.27399 8.61177 9.07213 9.63073 11.11057 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.065913 B = 0.007978 C = 0.007804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.700850 B = 3508.769996 C = 3587.208288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.535 5.535 3 C 0.192 3.808 4 C -0.505 4.505 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.274 1.274 12 C 0.080 3.920 13 C -0.074 4.074 14 C -0.127 4.127 15 C -0.147 4.147 16 C -0.143 4.143 17 C -0.134 4.134 18 H 0.054 0.946 19 H 0.072 0.928 20 H 0.009 0.991 21 H 0.028 0.972 22 H -0.011 1.011 23 H 0.261 0.739 24 H 0.067 0.933 25 H 0.022 0.978 26 H 0.048 0.952 27 H 0.039 0.961 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.365 -11.699 -4.218 12.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.259 5.259 3 C 0.066 3.934 4 C -0.544 4.544 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.199 1.199 12 C -0.049 4.049 13 C -0.075 4.075 14 C -0.184 4.184 15 C -0.184 4.184 16 C -0.180 4.180 17 C -0.172 4.172 18 H 0.072 0.928 19 H 0.090 0.910 20 H 0.027 0.973 21 H 0.046 0.954 22 H 0.007 0.993 23 H 0.070 0.930 24 H 0.085 0.915 25 H 0.040 0.960 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.120 -11.736 -3.816 12.729 hybrid contribution -0.382 0.979 -0.011 1.050 sum -3.502 -10.758 -3.827 11.943 Atomic orbital electron populations 1.22490 0.89345 1.00787 0.99079 1.62060 1.06717 1.17349 1.39781 1.19721 0.95337 0.81821 0.96481 1.21177 1.34647 0.96852 1.01708 0.91844 1.24998 0.95384 0.97376 0.96960 1.69965 1.38553 1.11414 1.34010 0.86501 0.78844 0.78405 0.83669 1.20642 1.21364 1.19882 1.21787 0.99468 0.91175 0.92471 1.21763 0.95659 0.95299 0.94773 1.21602 1.00514 0.99093 0.97200 1.23378 0.97082 1.02072 0.95841 1.22812 0.97526 1.00945 0.96764 1.22988 0.97377 0.99419 0.97447 0.92759 0.90974 0.97311 0.95372 0.99335 0.92983 0.91463 0.95989 0.93328 0.94147 0.90584 0.90745 0.90228 0.90540 0.92240 0.91861 0.90524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 7.84 60.07 0.47 1.10 16 2 N -0.54 -11.74 3.82 -244.37 -0.93 -12.68 16 3 C 0.19 5.10 4.72 -4.98 -0.02 5.08 16 4 C -0.51 -14.39 8.29 -34.44 -0.29 -14.68 16 5 H 0.06 1.79 7.25 -52.49 -0.38 1.41 16 6 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -27.10 13.29 55.43 0.74 -26.37 16 8 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 C 0.08 1.49 4.44 -3.82 -0.02 1.47 16 13 C -0.07 -1.13 0.76 -153.70 -0.12 -1.25 16 14 C -0.13 -1.91 9.10 37.16 0.34 -1.58 16 15 C -0.15 -2.03 6.00 -25.91 -0.16 -2.18 16 16 C -0.14 -1.80 7.73 -25.92 -0.20 -2.00 16 17 C -0.13 -1.73 7.23 -25.92 -0.19 -1.92 16 18 H 0.05 0.95 6.00 -51.93 -0.31 0.63 16 19 H 0.07 1.56 6.59 -51.93 -0.34 1.22 16 20 H 0.01 0.17 7.25 -51.93 -0.38 -0.21 16 21 H 0.03 0.80 7.99 -51.93 -0.42 0.39 16 22 H -0.01 -0.32 8.12 -51.92 -0.42 -0.74 16 23 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 24 H 0.07 1.28 8.02 -51.93 -0.42 0.87 16 25 H 0.02 0.42 7.27 -51.93 -0.38 0.04 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.04 0.53 7.94 -51.93 -0.41 0.11 16 28 H 0.08 1.31 7.34 -51.93 -0.38 0.93 16 29 H 0.07 0.94 7.96 -51.93 -0.41 0.52 16 30 H 0.08 1.19 4.81 -51.93 -0.25 0.94 16 31 H 0.08 1.00 7.62 -51.93 -0.40 0.61 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 34 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 LS Contribution 264.51 15.07 3.99 3.99 Total: -1.00 -29.35 264.51 -7.22 -36.58 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -5.72 Total: -3.85 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: -0.28 Total: -14.52 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: -0.20 Total: -39.04 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.35 -7.22 -36.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379321750.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.615 kcal (2) G-P(sol) polarization free energy of solvation -29.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds