Wall clock time and date at job start Mon Mar 30 2020 01:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46893 * 111.00474 * 2 1 4 4 C 1.50704 * 109.47051 * 66.04516 * 3 2 1 5 5 H 1.07997 * 119.99889 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00015 * 180.02562 * 4 3 2 7 7 N 1.31511 * 119.99853 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00128 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.46955 * 89.99616 * 8 6 4 10 10 H 1.48494 * 109.47441 * 210.00335 * 8 6 4 11 11 H 1.48504 * 109.46689 * 330.00075 * 8 6 4 12 12 C 1.46905 * 110.99478 * 236.04453 * 2 1 3 13 13 C 1.52999 * 109.47293 * 298.42423 * 12 2 1 14 14 C 1.52996 * 112.84980 * 307.12571 * 13 12 2 15 15 C 1.53782 * 113.68872 * 78.39372 * 13 12 2 16 16 C 1.53789 * 87.07981 * 89.12514 * 15 13 12 17 17 C 1.53780 * 87.08202 * 25.43030 * 16 15 13 18 18 H 1.08996 * 109.47188 * 195.16710 * 1 2 3 19 19 H 1.08994 * 109.46566 * 315.17052 * 1 2 3 20 20 H 1.09005 * 109.46724 * 75.16662 * 1 2 3 21 21 H 1.08995 * 109.47759 * 186.04980 * 3 2 1 22 22 H 1.09007 * 109.47142 * 306.04716 * 3 2 1 23 23 H 0.97004 * 119.99738 * 179.97438 * 7 6 4 24 24 H 1.09001 * 109.46613 * 178.42503 * 12 2 1 25 25 H 1.08993 * 109.47352 * 58.43160 * 12 2 1 26 26 H 1.08998 * 109.47375 * 288.80075 * 14 13 12 27 27 H 1.09001 * 109.46957 * 168.80477 * 14 13 12 28 28 H 1.08996 * 109.47143 * 48.80464 * 14 13 12 29 29 H 1.09000 * 113.61605 * 203.67423 * 15 13 12 30 30 H 1.08998 * 113.61470 * 334.57901 * 15 13 12 31 31 H 1.09002 * 113.61397 * 270.88265 * 16 15 13 32 32 H 1.08995 * 113.68726 * 139.99140 * 16 15 13 33 33 H 1.08994 * 113.61682 * 220.01697 * 17 16 15 34 34 H 1.09007 * 113.61241 * 89.11038 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9956 1.3713 0.0000 4 6 1.6371 2.0471 1.2985 5 1 1.0748 1.5112 2.0488 6 6 2.0270 3.3494 1.5285 7 7 2.7114 4.0020 0.6146 8 14 1.5833 4.1867 3.1383 9 1 2.6607 3.9505 4.1325 10 1 1.4304 5.6463 2.9114 11 1 0.3059 3.6290 3.6506 12 6 1.9954 -0.7661 -1.1376 13 6 1.5371 -2.2217 -1.0281 14 6 1.8686 -2.8485 0.3276 15 6 0.0817 -2.4462 -1.4713 16 6 0.6311 -2.6703 -2.8901 17 6 1.9535 -3.0904 -2.2269 18 1 -0.3633 -0.9918 0.2689 19 1 -0.3632 0.7288 0.7245 20 1 -0.3633 0.2631 -0.9935 21 1 3.0798 1.3443 -0.1083 22 1 1.5613 1.9273 -0.8310 23 1 2.9854 4.9184 0.7763 24 1 3.0847 -0.7265 -1.1294 25 1 1.6233 -0.3370 -2.0679 26 1 2.9442 -3.0092 0.4004 27 1 1.3514 -3.8033 0.4226 28 1 1.5464 -2.1797 1.1257 29 1 -0.3755 -3.3342 -1.0348 30 1 -0.5442 -1.5585 -1.3806 31 1 0.7087 -1.7556 -3.4778 32 1 0.1366 -3.4787 -3.4285 33 1 2.8385 -2.7227 -2.7461 34 1 2.0079 -4.1545 -1.9969 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379321750.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:35 Heat of formation + Delta-G solvation = 0.316962 kcal Electronic energy + Delta-G solvation = -13060.413261 eV Core-core repulsion = 10993.077610 eV Total energy + Delta-G solvation = -2067.335651 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.82801 -37.34423 -34.58272 -30.99542 -29.32160 -28.51638 -26.25010 -25.65859 -23.37455 -22.01056 -19.27130 -18.29554 -16.86819 -16.36485 -16.14028 -15.81162 -15.16900 -14.80362 -14.20021 -14.02830 -13.66301 -13.44382 -13.10680 -12.74929 -12.57694 -12.55542 -12.39553 -12.24908 -11.98183 -11.85652 -11.45421 -11.15613 -10.81855 -10.67103 -10.61280 -8.97566 -8.21072 -6.31526 1.40617 1.42621 1.53660 2.39948 3.11034 3.30967 3.72029 3.84245 3.92825 4.03831 4.33270 4.51664 4.63443 4.66642 4.80237 4.81965 4.94905 5.00393 5.00820 5.04458 5.10886 5.13659 5.20979 5.27398 5.32102 5.43772 5.60222 5.65324 5.72841 6.05482 6.35459 6.65824 6.85282 7.38264 8.90202 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.065913 B = 0.007978 C = 0.007804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.700850 B = 3508.769996 C = 3587.208288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.539 5.539 3 C 0.206 3.794 4 C -0.523 4.523 5 H 0.064 0.936 6 C -0.001 4.001 7 N -0.936 5.936 8 Si 0.972 3.028 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.263 1.263 12 C 0.080 3.920 13 C -0.083 4.083 14 C -0.123 4.123 15 C -0.144 4.144 16 C -0.138 4.138 17 C -0.124 4.124 18 H 0.084 0.916 19 H 0.050 0.950 20 H 0.012 0.988 21 H 0.000 1.000 22 H -0.042 1.042 23 H 0.264 0.736 24 H 0.054 0.946 25 H 0.016 0.984 26 H 0.046 0.954 27 H 0.066 0.934 28 H 0.049 0.951 29 H 0.096 0.904 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.060 0.940 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.327 -13.281 -3.700 14.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.263 5.263 3 C 0.080 3.920 4 C -0.561 4.561 5 H 0.082 0.918 6 C -0.199 4.199 7 N -0.577 5.577 8 Si 0.796 3.204 9 H -0.198 1.198 10 H -0.207 1.207 11 H -0.187 1.187 12 C -0.048 4.048 13 C -0.084 4.084 14 C -0.180 4.180 15 C -0.181 4.181 16 C -0.175 4.175 17 C -0.162 4.162 18 H 0.103 0.897 19 H 0.069 0.931 20 H 0.031 0.969 21 H 0.018 0.982 22 H -0.024 1.024 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.035 0.965 26 H 0.065 0.935 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.114 0.886 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.079 0.921 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.090 -13.343 -3.306 14.342 hybrid contribution -0.063 1.438 -0.223 1.456 sum -4.154 -11.905 -3.529 13.093 Atomic orbital electron populations 1.22476 0.87866 1.01869 0.98692 1.62004 1.08047 1.14590 1.41646 1.19380 0.93468 0.84208 0.94951 1.21473 1.34843 0.97499 1.02273 0.91758 1.25961 0.95007 0.98064 1.00835 1.70098 1.39466 1.11893 1.36234 0.85343 0.79008 0.77209 0.78820 1.19813 1.20723 1.18732 1.21837 0.98701 0.93360 0.90941 1.21748 0.97440 0.93001 0.96192 1.21560 1.00752 0.99681 0.95999 1.23390 0.95654 1.02379 0.96726 1.22776 0.97288 1.01278 0.96202 1.22979 0.97481 1.00069 0.95664 0.89719 0.93099 0.96947 0.98232 1.02438 0.92687 0.92741 0.96544 0.93483 0.91470 0.93194 0.88592 0.91618 0.91685 0.89874 0.92097 0.88234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.55 7.84 127.69 1.00 2.55 16 2 N -0.54 -24.15 3.82 -927.04 -3.54 -27.69 16 3 C 0.21 11.46 4.72 85.56 0.40 11.87 16 4 C -0.52 -30.41 8.29 25.60 0.21 -30.20 16 5 H 0.06 3.65 7.25 -2.91 -0.02 3.63 16 6 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 7 N -0.94 -57.62 13.29 21.45 0.28 -57.33 16 8 Si 0.97 44.97 29.54 68.60 2.03 47.00 16 9 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 12 C 0.08 3.02 4.44 86.30 0.38 3.40 16 13 C -0.08 -2.40 0.76 -51.66 -0.04 -2.44 16 14 C -0.12 -3.46 9.10 71.98 0.66 -2.80 16 15 C -0.14 -3.60 6.00 31.12 0.19 -3.41 16 16 C -0.14 -3.09 7.73 31.12 0.24 -2.85 16 17 C -0.12 -2.85 7.23 31.12 0.23 -2.63 16 18 H 0.08 2.84 6.00 -2.39 -0.01 2.82 16 19 H 0.05 2.22 6.59 -2.39 -0.02 2.21 16 20 H 0.01 0.47 7.25 -2.38 -0.02 0.46 16 21 H 0.00 -0.03 7.99 -2.39 -0.02 -0.05 16 22 H -0.04 -2.54 8.12 -2.38 -0.02 -2.56 16 23 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 24 H 0.05 2.15 8.02 -2.39 -0.02 2.13 16 25 H 0.02 0.63 7.27 -2.39 -0.02 0.62 16 26 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.07 1.53 7.94 -2.39 -0.02 1.51 16 28 H 0.05 1.66 7.34 -2.39 -0.02 1.64 16 29 H 0.10 2.01 7.96 -2.39 -0.02 1.99 16 30 H 0.07 1.82 4.81 -2.39 -0.01 1.81 16 31 H 0.06 1.60 7.62 -2.39 -0.02 1.59 16 32 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.06 1.43 8.10 -2.39 -0.02 1.41 16 34 H 0.10 1.88 8.10 -2.38 -0.02 1.87 16 Total: -1.00 -63.78 264.51 3.54 -60.23 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: 1.04 Total: 3.89 kcal Atomic # 6 Polarization: -29.83 SS G_CDS: 3.73 Total: -26.10 kcal Atomic # 7 Polarization: -81.77 SS G_CDS: -3.26 Total: -85.02 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -63.78 3.54 -60.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379321750.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.551 kcal (2) G-P(sol) polarization free energy of solvation -63.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds