Wall clock time and date at job start Mon Mar 30 2020 01:54:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46900 * 1
3 3 C 1.46894 * 110.99873 * 2 1
4 4 C 1.53002 * 109.47294 * 293.95503 * 3 2 1
5 5 C 1.50702 * 109.47165 * 180.02562 * 4 3 2
6 6 H 1.07999 * 119.99923 * 0.02562 * 5 4 3
7 7 C 1.37871 * 120.00203 * 180.02562 * 5 4 3
8 8 N 1.31516 * 120.00089 * 180.02562 * 7 5 4
9 9 Si 1.86804 * 119.99783 * 359.97438 * 7 5 4
10 10 H 1.48500 * 109.47134 * 90.00193 * 9 7 5
11 11 H 1.48504 * 109.47108 * 210.00362 * 9 7 5
12 12 H 1.48503 * 109.47013 * 329.99996 * 9 7 5
13 13 C 1.46903 * 111.00054 * 123.95970 * 2 1 3
14 14 H 1.08999 * 115.54627 * 283.55297 * 13 2 1
15 15 C 1.53000 * 117.49833 * 69.21978 * 13 2 1
16 16 C 1.52991 * 117.49960 * 137.88345 * 13 2 1
17 17 C 1.52999 * 117.50269 * 359.97438 * 16 13 2
18 18 C 1.53000 * 117.49885 * 145.01778 * 16 13 2
19 19 H 1.08998 * 109.47434 * 65.85949 * 1 2 3
20 20 H 1.09004 * 109.47115 * 185.86001 * 1 2 3
21 21 H 1.09005 * 109.47234 * 305.85557 * 1 2 3
22 22 H 1.08998 * 109.47406 * 53.95521 * 3 2 1
23 23 H 1.09005 * 109.46556 * 173.95852 * 3 2 1
24 24 H 1.08998 * 109.46908 * 300.00322 * 4 3 2
25 25 H 1.08994 * 109.46722 * 60.00233 * 4 3 2
26 26 H 0.97003 * 119.99638 * 179.97438 * 8 7 5
27 27 H 1.08999 * 117.49440 * 214.97719 * 15 13 2
28 28 H 1.08996 * 117.50217 * 359.97438 * 15 13 2
29 29 H 1.09004 * 109.47061 * 65.43933 * 17 16 13
30 30 H 1.08997 * 109.47724 * 185.44326 * 17 16 13
31 31 H 1.09009 * 109.47041 * 305.44475 * 17 16 13
32 32 H 1.09001 * 109.47064 * 60.00271 * 18 16 13
33 33 H 1.09004 * 109.47014 * 180.02562 * 18 16 13
34 34 H 1.08996 * 109.47424 * 299.99661 * 18 16 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9954 1.3714 0.0000
4 6 1.6314 2.0574 -1.3183
5 6 2.1720 3.4642 -1.3185
6 1 2.7207 3.8319 -0.4640
7 6 1.9661 4.2817 -2.4094
8 7 2.4383 5.5091 -2.4098
9 14 1.0176 3.6453 -3.8876
10 1 -0.4280 3.9352 -3.7104
11 1 1.5099 4.3160 -5.1177
12 1 1.2171 2.1788 -4.0098
13 6 1.9955 -0.7661 1.1375
14 1 1.9488 -0.2644 2.1041
15 6 1.7991 -2.2833 1.1189
16 6 3.1884 -1.6878 0.8769
17 6 3.7415 -1.7417 -0.5486
18 6 4.2243 -1.8353 1.9932
19 1 -0.3634 0.4203 -0.9378
20 1 -0.3633 -1.0223 0.1049
21 1 -0.3634 0.6020 0.8329
22 1 1.5611 1.9273 0.8309
23 1 3.0797 1.3443 0.1082
24 1 2.0657 1.5015 -2.1491
25 1 0.5472 2.0845 -1.4264
26 1 2.2937 6.0841 -3.1776
27 1 1.6238 -2.7798 2.0732
28 1 1.2790 -2.7131 0.2628
29 1 4.1629 -0.7715 -0.8117
30 1 4.5186 -2.5037 -0.6083
31 1 2.9368 -1.9883 -1.2414
32 1 3.7422 -2.2336 2.8860
33 1 5.0118 -2.5164 1.6704
34 1 4.6573 -0.8607 2.2182
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000379335362.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:54:33
Heat of formation + Delta-G solvation = 14.351229 kcal
Electronic energy + Delta-G solvation = -12792.209492 eV
Core-core repulsion = 10725.482412 eV
Total energy + Delta-G solvation = -2066.727080 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 197.148 amu
Computer time = 0.15 seconds
Orbital eigenvalues (eV)
-38.80269 -35.37354 -32.74175 -30.16819 -28.39551 -27.28722 -26.16421 -23.71353
-20.74313 -19.86175 -18.65234 -16.80736 -15.61667 -14.73478 -14.19763 -14.02721
-13.73784 -13.46877 -12.86466 -12.51340 -12.38982 -12.24191 -11.92048 -11.59356
-11.41920 -11.28346 -10.94524 -10.89244 -10.14041 -9.90789 -9.80332 -9.49117
-9.38630 -9.14903 -8.50374 -7.79558 -6.02004 -3.99827 3.33524 3.40953
3.47346 3.87872 4.25446 4.48537 4.97305 5.01114 5.25337 5.32635
5.33692 5.61197 5.77438 5.78827 5.85369 5.89069 6.04259 6.09621
6.18061 6.19592 6.22606 6.35737 6.39334 6.42086 6.68479 6.82503
7.22185 7.34259 7.65109 7.70602 7.88927 8.56152 9.02367 9.60721
11.11450
Molecular weight = 197.15amu
Principal moments of inertia in cm(-1)
A = 0.047736 B = 0.008335 C = 0.007995
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 586.419159 B = 3358.420963 C = 3501.306191
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.029 3.971
2 N -0.517 5.517
3 C 0.076 3.924
4 C -0.006 4.006
5 C -0.520 4.520
6 H 0.070 0.930
7 C 0.067 3.933
8 N -0.905 5.905
9 Si 0.880 3.120
10 H -0.278 1.278
11 H -0.288 1.288
12 H -0.263 1.263
13 C 0.015 3.985
14 H 0.078 0.922
15 C -0.168 4.168
16 C -0.114 4.114
17 C -0.100 4.100
18 C -0.114 4.114
19 H 0.071 0.929
20 H 0.056 0.944
21 H 0.021 0.979
22 H 0.024 0.976
23 H 0.066 0.934
24 H 0.024 0.976
25 H 0.011 0.989
26 H 0.263 0.737
27 H 0.088 0.912
28 H 0.095 0.905
29 H 0.062 0.938
30 H 0.046 0.954
31 H 0.061 0.939
32 H 0.052 0.948
33 H 0.059 0.941
34 H 0.059 0.941
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.807 -14.917 6.023 16.107
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.119 4.119
2 N -0.241 5.241
3 C -0.051 4.051
4 C -0.044 4.044
5 C -0.559 4.559
6 H 0.088 0.912
7 C -0.134 4.134
8 N -0.544 5.544
9 Si 0.707 3.293
10 H -0.204 1.204
11 H -0.214 1.214
12 H -0.187 1.187
13 C -0.094 4.094
14 H 0.096 0.904
15 C -0.205 4.205
16 C -0.115 4.115
17 C -0.158 4.158
18 C -0.172 4.172
19 H 0.090 0.910
20 H 0.075 0.925
21 H 0.040 0.960
22 H 0.043 0.957
23 H 0.084 0.916
24 H 0.042 0.958
25 H 0.029 0.971
26 H 0.072 0.928
27 H 0.106 0.894
28 H 0.114 0.886
29 H 0.081 0.919
30 H 0.065 0.935
31 H 0.080 0.920
32 H 0.071 0.929
33 H 0.078 0.922
34 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -0.641 -14.973 5.480 15.957
hybrid contribution -0.849 0.332 -0.014 0.912
sum -1.490 -14.641 5.465 15.698
Atomic orbital electron populations
1.22309 0.88003 1.00357 1.01187 1.61871 1.07146 1.15807 1.39233
1.22102 0.99154 0.84618 0.99206 1.19556 0.96143 0.95657 0.93048
1.21094 1.35449 0.95551 1.03770 0.91173 1.24992 0.95372 0.94656
0.98358 1.69920 1.46401 1.07167 1.30901 0.86772 0.80277 0.79844
0.82412 1.20412 1.21426 1.18730 1.22521 1.02314 0.90871 0.93671
0.90402 1.23280 0.99695 0.95145 1.02382 1.21658 0.89290 1.03398
0.97110 1.21126 1.00113 1.01491 0.93033 1.21353 0.97729 1.01738
0.96359 0.91034 0.92492 0.96044 0.95743 0.91553 0.95789 0.97121
0.92768 0.89363 0.88615 0.91868 0.93505 0.92023 0.92883 0.92225
0.92224
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.48 9.21 60.06 0.55 1.03 16
2 N -0.52 -9.23 4.25 -234.89 -1.00 -10.23 16
3 C 0.08 1.60 4.90 -3.83 -0.02 1.58 16
4 C -0.01 -0.16 3.96 -27.88 -0.11 -0.27 16
5 C -0.52 -15.14 9.66 -34.44 -0.33 -15.47 16
6 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16
7 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16
8 N -0.90 -28.31 13.96 55.43 0.77 -27.53 16
9 Si 0.88 22.17 27.47 -169.99 -4.67 17.50 16
10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16
11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16
12 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16
13 C 0.02 0.23 4.70 -67.72 -0.32 -0.08 16
14 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16
15 C -0.17 -2.11 9.13 -26.69 -0.24 -2.36 16
16 C -0.11 -1.54 2.70 -154.47 -0.42 -1.96 16
17 C -0.10 -1.42 9.26 37.16 0.34 -1.08 16
18 C -0.11 -1.30 9.85 37.16 0.37 -0.93 16
19 H 0.07 1.23 6.76 -51.93 -0.35 0.88 16
20 H 0.06 0.79 7.51 -51.93 -0.39 0.40 16
21 H 0.02 0.34 8.06 -51.93 -0.42 -0.08 16
22 H 0.02 0.52 8.06 -51.93 -0.42 0.10 16
23 H 0.07 1.42 8.08 -51.93 -0.42 1.00 16
24 H 0.02 0.61 7.20 -51.93 -0.37 0.23 16
25 H 0.01 0.26 6.11 -51.93 -0.32 -0.06 16
26 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16
27 H 0.09 0.95 8.05 -51.93 -0.42 0.54 16
28 H 0.10 1.22 8.01 -51.93 -0.42 0.81 16
29 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16
30 H 0.05 0.56 8.01 -51.93 -0.42 0.15 16
31 H 0.06 0.91 7.95 -51.92 -0.41 0.50 16
32 H 0.05 0.53 7.90 -51.93 -0.41 0.12 16
33 H 0.06 0.61 7.99 -51.93 -0.41 0.19 16
34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16
LS Contribution 275.69 15.07 4.15 4.15
Total: -1.00 -30.47 275.69 -7.05 -37.52
By element:
Atomic # 1 Polarization: 2.25 SS G_CDS: -6.03 Total: -3.78 kcal
Atomic # 6 Polarization: -17.36 SS G_CDS: -0.28 Total: -17.64 kcal
Atomic # 7 Polarization: -37.54 SS G_CDS: -0.23 Total: -37.76 kcal
Atomic # 14 Polarization: 22.17 SS G_CDS: -4.67 Total: 17.50 kcal
Total LS contribution 4.15 Total: 4.15 kcal
Total: -30.47 -7.05 -37.52 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000379335362.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 51.868 kcal
(2) G-P(sol) polarization free energy of solvation -30.471 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.398 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.046 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.517 kcal
(6) G-S(sol) free energy of system = (1) + (5) 14.351 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.15 seconds