Wall clock time and date at job start Mon Mar 30 2020 01:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46894 * 110.99873 * 2 1 4 4 C 1.53002 * 109.47294 * 293.95503 * 3 2 1 5 5 C 1.50702 * 109.47165 * 180.02562 * 4 3 2 6 6 H 1.07999 * 119.99923 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00203 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00089 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 119.99783 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47134 * 90.00193 * 9 7 5 11 11 H 1.48504 * 109.47108 * 210.00362 * 9 7 5 12 12 H 1.48503 * 109.47013 * 329.99996 * 9 7 5 13 13 C 1.46903 * 111.00054 * 123.95970 * 2 1 3 14 14 H 1.08999 * 115.54627 * 283.55297 * 13 2 1 15 15 C 1.53000 * 117.49833 * 69.21978 * 13 2 1 16 16 C 1.52991 * 117.49960 * 137.88345 * 13 2 1 17 17 C 1.52999 * 117.50269 * 359.97438 * 16 13 2 18 18 C 1.53000 * 117.49885 * 145.01778 * 16 13 2 19 19 H 1.08998 * 109.47434 * 65.85949 * 1 2 3 20 20 H 1.09004 * 109.47115 * 185.86001 * 1 2 3 21 21 H 1.09005 * 109.47234 * 305.85557 * 1 2 3 22 22 H 1.08998 * 109.47406 * 53.95521 * 3 2 1 23 23 H 1.09005 * 109.46556 * 173.95852 * 3 2 1 24 24 H 1.08998 * 109.46908 * 300.00322 * 4 3 2 25 25 H 1.08994 * 109.46722 * 60.00233 * 4 3 2 26 26 H 0.97003 * 119.99638 * 179.97438 * 8 7 5 27 27 H 1.08999 * 117.49440 * 214.97719 * 15 13 2 28 28 H 1.08996 * 117.50217 * 359.97438 * 15 13 2 29 29 H 1.09004 * 109.47061 * 65.43933 * 17 16 13 30 30 H 1.08997 * 109.47724 * 185.44326 * 17 16 13 31 31 H 1.09009 * 109.47041 * 305.44475 * 17 16 13 32 32 H 1.09001 * 109.47064 * 60.00271 * 18 16 13 33 33 H 1.09004 * 109.47014 * 180.02562 * 18 16 13 34 34 H 1.08996 * 109.47424 * 299.99661 * 18 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0574 -1.3183 5 6 2.1720 3.4642 -1.3185 6 1 2.7207 3.8319 -0.4640 7 6 1.9661 4.2817 -2.4094 8 7 2.4383 5.5091 -2.4098 9 14 1.0176 3.6453 -3.8876 10 1 -0.4280 3.9352 -3.7104 11 1 1.5099 4.3160 -5.1177 12 1 1.2171 2.1788 -4.0098 13 6 1.9955 -0.7661 1.1375 14 1 1.9488 -0.2644 2.1041 15 6 1.7991 -2.2833 1.1189 16 6 3.1884 -1.6878 0.8769 17 6 3.7415 -1.7417 -0.5486 18 6 4.2243 -1.8353 1.9932 19 1 -0.3634 0.4203 -0.9378 20 1 -0.3633 -1.0223 0.1049 21 1 -0.3634 0.6020 0.8329 22 1 1.5611 1.9273 0.8309 23 1 3.0797 1.3443 0.1082 24 1 2.0657 1.5015 -2.1491 25 1 0.5472 2.0845 -1.4264 26 1 2.2937 6.0841 -3.1776 27 1 1.6238 -2.7798 2.0732 28 1 1.2790 -2.7131 0.2628 29 1 4.1629 -0.7715 -0.8117 30 1 4.5186 -2.5037 -0.6083 31 1 2.9368 -1.9883 -1.2414 32 1 3.7422 -2.2336 2.8860 33 1 5.0118 -2.5164 1.6704 34 1 4.6573 -0.8607 2.2182 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379335362.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:33 Heat of formation + Delta-G solvation = -4.696725 kcal Electronic energy + Delta-G solvation = -12793.035473 eV Core-core repulsion = 10725.482412 eV Total energy + Delta-G solvation = -2067.553061 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.99754 -36.85871 -34.84901 -32.02419 -29.57677 -28.29749 -27.72684 -25.48992 -22.19003 -21.47874 -19.82546 -18.93219 -16.95869 -16.40948 -15.83487 -15.58249 -15.20788 -14.65597 -14.52766 -13.95378 -13.88451 -13.39782 -13.33290 -12.98665 -12.85868 -12.64003 -12.54707 -11.99184 -11.87670 -11.80747 -11.64642 -11.43851 -10.77872 -10.76846 -10.47043 -9.20270 -8.31518 -6.35940 1.34403 1.37099 1.50412 2.35312 2.80677 2.93705 3.03930 3.90865 3.97041 4.13674 4.28128 4.31958 4.39874 4.61768 4.68730 4.78020 4.84390 4.91048 4.93503 5.00837 5.07084 5.12281 5.15694 5.17451 5.28971 5.38746 5.44183 5.59433 5.61584 6.11029 6.27700 6.33365 6.71536 7.28835 8.85328 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.047736 B = 0.008335 C = 0.007995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.419159 B = 3358.420963 C = 3501.306191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.521 5.521 3 C 0.091 3.909 4 C 0.003 3.997 5 C -0.535 4.535 6 H 0.030 0.970 7 C 0.007 3.993 8 N -0.950 5.950 9 Si 0.952 3.048 10 H -0.265 1.265 11 H -0.281 1.281 12 H -0.249 1.249 13 C -0.012 4.012 14 H 0.076 0.924 15 C -0.140 4.140 16 C -0.119 4.119 17 C -0.099 4.099 18 C -0.112 4.112 19 H 0.060 0.940 20 H 0.085 0.915 21 H 0.020 0.980 22 H 0.014 0.986 23 H 0.054 0.946 24 H 0.020 0.980 25 H 0.018 0.982 26 H 0.267 0.733 27 H 0.114 0.886 28 H 0.098 0.902 29 H 0.036 0.964 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.790 -17.465 5.836 18.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.244 5.244 3 C -0.037 4.037 4 C -0.035 4.035 5 C -0.573 4.573 6 H 0.048 0.952 7 C -0.190 4.190 8 N -0.591 5.591 9 Si 0.775 3.225 10 H -0.190 1.190 11 H -0.207 1.207 12 H -0.172 1.172 13 C -0.121 4.121 14 H 0.094 0.906 15 C -0.177 4.177 16 C -0.120 4.120 17 C -0.156 4.156 18 C -0.169 4.169 19 H 0.079 0.921 20 H 0.103 0.897 21 H 0.039 0.961 22 H 0.032 0.968 23 H 0.072 0.928 24 H 0.038 0.962 25 H 0.036 0.964 26 H 0.076 0.924 27 H 0.132 0.868 28 H 0.116 0.884 29 H 0.055 0.945 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.625 -17.540 5.312 18.398 hybrid contribution -0.487 1.139 0.121 1.245 sum -2.113 -16.400 5.433 17.405 Atomic orbital electron populations 1.22362 0.86966 1.02059 1.00536 1.61771 1.08155 1.13469 1.41024 1.21737 0.98481 0.86613 0.96866 1.19401 0.96068 0.93184 0.94797 1.21412 1.35227 0.97967 1.02702 0.95161 1.25977 0.96434 0.94715 1.01858 1.70067 1.48021 1.08743 1.32250 0.85633 0.79049 0.79855 0.77978 1.18995 1.20710 1.17243 1.22607 1.04669 0.92193 0.92613 0.90601 1.23346 0.98130 0.92491 1.03718 1.21819 0.90115 1.02723 0.97344 1.21094 1.00392 1.00668 0.93437 1.21358 0.97622 1.01647 0.96270 0.92145 0.89674 0.96136 0.96808 0.92763 0.96180 0.96354 0.92388 0.86778 0.88382 0.94507 0.91318 0.92877 0.91215 0.90830 0.93301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 9.21 127.69 1.18 2.05 16 2 N -0.52 -18.04 4.25 -897.05 -3.81 -21.85 16 3 C 0.09 3.87 4.90 86.31 0.42 4.29 16 4 C 0.00 0.16 3.96 29.85 0.12 0.28 16 5 C -0.53 -32.01 9.66 25.60 0.25 -31.76 16 6 H 0.03 1.98 7.99 -2.91 -0.02 1.96 16 7 C 0.01 0.42 5.47 84.65 0.46 0.89 16 8 N -0.95 -60.80 13.96 21.45 0.30 -60.50 16 9 Si 0.95 45.52 27.47 68.60 1.88 47.41 16 10 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.25 -11.26 6.54 99.48 0.65 -10.61 16 13 C -0.01 -0.34 4.70 44.91 0.21 -0.13 16 14 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 15 C -0.14 -3.03 9.13 30.62 0.28 -2.75 16 16 C -0.12 -2.97 2.70 -52.16 -0.14 -3.11 16 17 C -0.10 -2.65 9.26 71.98 0.67 -1.99 16 18 C -0.11 -2.26 9.85 71.98 0.71 -1.55 16 19 H 0.06 1.97 6.76 -2.39 -0.02 1.95 16 20 H 0.08 2.11 7.51 -2.38 -0.02 2.10 16 21 H 0.02 0.62 8.06 -2.38 -0.02 0.60 16 22 H 0.01 0.60 8.06 -2.39 -0.02 0.59 16 23 H 0.05 2.40 8.08 -2.38 -0.02 2.38 16 24 H 0.02 1.00 7.20 -2.39 -0.02 0.98 16 25 H 0.02 0.87 6.11 -2.39 -0.01 0.86 16 26 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 27 H 0.11 1.93 8.05 -2.39 -0.02 1.91 16 28 H 0.10 2.13 8.01 -2.39 -0.02 2.11 16 29 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.07 1.51 8.01 -2.39 -0.02 1.49 16 31 H 0.05 1.49 7.95 -2.38 -0.02 1.47 16 32 H 0.07 1.18 7.90 -2.39 -0.02 1.16 16 33 H 0.07 1.28 7.99 -2.38 -0.02 1.26 16 34 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -66.25 275.69 3.50 -62.76 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: 0.97 Total: 5.98 kcal Atomic # 6 Polarization: -37.94 SS G_CDS: 4.15 Total: -33.79 kcal Atomic # 7 Polarization: -78.84 SS G_CDS: -3.52 Total: -82.35 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.88 Total: 47.41 kcal Total: -66.25 3.50 -62.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379335362.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.062 kcal (2) G-P(sol) polarization free energy of solvation -66.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds