Wall clock time and date at job start Mon Mar 30 2020 01:54:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46900 * 1
3 3 C 1.46894 * 110.99873 * 2 1
4 4 C 1.53002 * 109.47294 * 293.95503 * 3 2 1
5 5 C 1.50702 * 109.47165 * 180.02562 * 4 3 2
6 6 H 1.07999 * 119.99923 * 0.02562 * 5 4 3
7 7 C 1.37871 * 120.00203 * 180.02562 * 5 4 3
8 8 N 1.31516 * 120.00089 * 180.02562 * 7 5 4
9 9 Si 1.86804 * 119.99783 * 359.97438 * 7 5 4
10 10 H 1.48500 * 109.47134 * 90.00193 * 9 7 5
11 11 H 1.48504 * 109.47108 * 210.00362 * 9 7 5
12 12 H 1.48503 * 109.47013 * 329.99996 * 9 7 5
13 13 C 1.46903 * 111.00054 * 123.95970 * 2 1 3
14 14 H 1.08999 * 115.54627 * 283.55297 * 13 2 1
15 15 C 1.53000 * 117.49833 * 69.21978 * 13 2 1
16 16 C 1.52991 * 117.49960 * 137.88345 * 13 2 1
17 17 C 1.52999 * 117.50269 * 359.97438 * 16 13 2
18 18 C 1.53000 * 117.49885 * 145.01778 * 16 13 2
19 19 H 1.08998 * 109.47434 * 65.85949 * 1 2 3
20 20 H 1.09004 * 109.47115 * 185.86001 * 1 2 3
21 21 H 1.09005 * 109.47234 * 305.85557 * 1 2 3
22 22 H 1.08998 * 109.47406 * 53.95521 * 3 2 1
23 23 H 1.09005 * 109.46556 * 173.95852 * 3 2 1
24 24 H 1.08998 * 109.46908 * 300.00322 * 4 3 2
25 25 H 1.08994 * 109.46722 * 60.00233 * 4 3 2
26 26 H 0.97003 * 119.99638 * 179.97438 * 8 7 5
27 27 H 1.08999 * 117.49440 * 214.97719 * 15 13 2
28 28 H 1.08996 * 117.50217 * 359.97438 * 15 13 2
29 29 H 1.09004 * 109.47061 * 65.43933 * 17 16 13
30 30 H 1.08997 * 109.47724 * 185.44326 * 17 16 13
31 31 H 1.09009 * 109.47041 * 305.44475 * 17 16 13
32 32 H 1.09001 * 109.47064 * 60.00271 * 18 16 13
33 33 H 1.09004 * 109.47014 * 180.02562 * 18 16 13
34 34 H 1.08996 * 109.47424 * 299.99661 * 18 16 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9954 1.3714 0.0000
4 6 1.6314 2.0574 -1.3183
5 6 2.1720 3.4642 -1.3185
6 1 2.7207 3.8319 -0.4640
7 6 1.9661 4.2817 -2.4094
8 7 2.4383 5.5091 -2.4098
9 14 1.0176 3.6453 -3.8876
10 1 -0.4280 3.9352 -3.7104
11 1 1.5099 4.3160 -5.1177
12 1 1.2171 2.1788 -4.0098
13 6 1.9955 -0.7661 1.1375
14 1 1.9488 -0.2644 2.1041
15 6 1.7991 -2.2833 1.1189
16 6 3.1884 -1.6878 0.8769
17 6 3.7415 -1.7417 -0.5486
18 6 4.2243 -1.8353 1.9932
19 1 -0.3634 0.4203 -0.9378
20 1 -0.3633 -1.0223 0.1049
21 1 -0.3634 0.6020 0.8329
22 1 1.5611 1.9273 0.8309
23 1 3.0797 1.3443 0.1082
24 1 2.0657 1.5015 -2.1491
25 1 0.5472 2.0845 -1.4264
26 1 2.2937 6.0841 -3.1776
27 1 1.6238 -2.7798 2.0732
28 1 1.2790 -2.7131 0.2628
29 1 4.1629 -0.7715 -0.8117
30 1 4.5186 -2.5037 -0.6083
31 1 2.9368 -1.9883 -1.2414
32 1 3.7422 -2.2336 2.8860
33 1 5.0118 -2.5164 1.6704
34 1 4.6573 -0.8607 2.2182
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000379335362.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:54:33
Heat of formation + Delta-G solvation = -4.696725 kcal
Electronic energy + Delta-G solvation = -12793.035473 eV
Core-core repulsion = 10725.482412 eV
Total energy + Delta-G solvation = -2067.553061 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 197.148 amu
Computer time = 0.19 seconds
Orbital eigenvalues (eV)
-39.99754 -36.85871 -34.84901 -32.02419 -29.57677 -28.29749 -27.72684 -25.48992
-22.19003 -21.47874 -19.82546 -18.93219 -16.95869 -16.40948 -15.83487 -15.58249
-15.20788 -14.65597 -14.52766 -13.95378 -13.88451 -13.39782 -13.33290 -12.98665
-12.85868 -12.64003 -12.54707 -11.99184 -11.87670 -11.80747 -11.64642 -11.43851
-10.77872 -10.76846 -10.47043 -9.20270 -8.31518 -6.35940 1.34403 1.37099
1.50412 2.35312 2.80677 2.93705 3.03930 3.90865 3.97041 4.13674
4.28128 4.31958 4.39874 4.61768 4.68730 4.78020 4.84390 4.91048
4.93503 5.00837 5.07084 5.12281 5.15694 5.17451 5.28971 5.38746
5.44183 5.59433 5.61584 6.11029 6.27700 6.33365 6.71536 7.28835
8.85328
Molecular weight = 197.15amu
Principal moments of inertia in cm(-1)
A = 0.047736 B = 0.008335 C = 0.007995
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 586.419159 B = 3358.420963 C = 3501.306191
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 N -0.521 5.521
3 C 0.091 3.909
4 C 0.003 3.997
5 C -0.535 4.535
6 H 0.030 0.970
7 C 0.007 3.993
8 N -0.950 5.950
9 Si 0.952 3.048
10 H -0.265 1.265
11 H -0.281 1.281
12 H -0.249 1.249
13 C -0.012 4.012
14 H 0.076 0.924
15 C -0.140 4.140
16 C -0.119 4.119
17 C -0.099 4.099
18 C -0.112 4.112
19 H 0.060 0.940
20 H 0.085 0.915
21 H 0.020 0.980
22 H 0.014 0.986
23 H 0.054 0.946
24 H 0.020 0.980
25 H 0.018 0.982
26 H 0.267 0.733
27 H 0.114 0.886
28 H 0.098 0.902
29 H 0.036 0.964
30 H 0.068 0.932
31 H 0.052 0.948
32 H 0.069 0.931
33 H 0.073 0.927
34 H 0.048 0.952
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.790 -17.465 5.836 18.501
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.119 4.119
2 N -0.244 5.244
3 C -0.037 4.037
4 C -0.035 4.035
5 C -0.573 4.573
6 H 0.048 0.952
7 C -0.190 4.190
8 N -0.591 5.591
9 Si 0.775 3.225
10 H -0.190 1.190
11 H -0.207 1.207
12 H -0.172 1.172
13 C -0.121 4.121
14 H 0.094 0.906
15 C -0.177 4.177
16 C -0.120 4.120
17 C -0.156 4.156
18 C -0.169 4.169
19 H 0.079 0.921
20 H 0.103 0.897
21 H 0.039 0.961
22 H 0.032 0.968
23 H 0.072 0.928
24 H 0.038 0.962
25 H 0.036 0.964
26 H 0.076 0.924
27 H 0.132 0.868
28 H 0.116 0.884
29 H 0.055 0.945
30 H 0.087 0.913
31 H 0.071 0.929
32 H 0.088 0.912
33 H 0.092 0.908
34 H 0.067 0.933
Dipole moment (debyes) X Y Z Total
from point charges -1.625 -17.540 5.312 18.398
hybrid contribution -0.487 1.139 0.121 1.245
sum -2.113 -16.400 5.433 17.405
Atomic orbital electron populations
1.22362 0.86966 1.02059 1.00536 1.61771 1.08155 1.13469 1.41024
1.21737 0.98481 0.86613 0.96866 1.19401 0.96068 0.93184 0.94797
1.21412 1.35227 0.97967 1.02702 0.95161 1.25977 0.96434 0.94715
1.01858 1.70067 1.48021 1.08743 1.32250 0.85633 0.79049 0.79855
0.77978 1.18995 1.20710 1.17243 1.22607 1.04669 0.92193 0.92613
0.90601 1.23346 0.98130 0.92491 1.03718 1.21819 0.90115 1.02723
0.97344 1.21094 1.00392 1.00668 0.93437 1.21358 0.97622 1.01647
0.96270 0.92145 0.89674 0.96136 0.96808 0.92763 0.96180 0.96354
0.92388 0.86778 0.88382 0.94507 0.91318 0.92877 0.91215 0.90830
0.93301
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.87 9.21 127.69 1.18 2.05 16
2 N -0.52 -18.04 4.25 -897.05 -3.81 -21.85 16
3 C 0.09 3.87 4.90 86.31 0.42 4.29 16
4 C 0.00 0.16 3.96 29.85 0.12 0.28 16
5 C -0.53 -32.01 9.66 25.60 0.25 -31.76 16
6 H 0.03 1.98 7.99 -2.91 -0.02 1.96 16
7 C 0.01 0.42 5.47 84.65 0.46 0.89 16
8 N -0.95 -60.80 13.96 21.45 0.30 -60.50 16
9 Si 0.95 45.52 27.47 68.60 1.88 47.41 16
10 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16
11 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16
12 H -0.25 -11.26 6.54 99.48 0.65 -10.61 16
13 C -0.01 -0.34 4.70 44.91 0.21 -0.13 16
14 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16
15 C -0.14 -3.03 9.13 30.62 0.28 -2.75 16
16 C -0.12 -2.97 2.70 -52.16 -0.14 -3.11 16
17 C -0.10 -2.65 9.26 71.98 0.67 -1.99 16
18 C -0.11 -2.26 9.85 71.98 0.71 -1.55 16
19 H 0.06 1.97 6.76 -2.39 -0.02 1.95 16
20 H 0.08 2.11 7.51 -2.38 -0.02 2.10 16
21 H 0.02 0.62 8.06 -2.38 -0.02 0.60 16
22 H 0.01 0.60 8.06 -2.39 -0.02 0.59 16
23 H 0.05 2.40 8.08 -2.38 -0.02 2.38 16
24 H 0.02 1.00 7.20 -2.39 -0.02 0.98 16
25 H 0.02 0.87 6.11 -2.39 -0.01 0.86 16
26 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16
27 H 0.11 1.93 8.05 -2.39 -0.02 1.91 16
28 H 0.10 2.13 8.01 -2.39 -0.02 2.11 16
29 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16
30 H 0.07 1.51 8.01 -2.39 -0.02 1.49 16
31 H 0.05 1.49 7.95 -2.38 -0.02 1.47 16
32 H 0.07 1.18 7.90 -2.39 -0.02 1.16 16
33 H 0.07 1.28 7.99 -2.38 -0.02 1.26 16
34 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16
Total: -1.00 -66.25 275.69 3.50 -62.76
By element:
Atomic # 1 Polarization: 5.00 SS G_CDS: 0.97 Total: 5.98 kcal
Atomic # 6 Polarization: -37.94 SS G_CDS: 4.15 Total: -33.79 kcal
Atomic # 7 Polarization: -78.84 SS G_CDS: -3.52 Total: -82.35 kcal
Atomic # 14 Polarization: 45.52 SS G_CDS: 1.88 Total: 47.41 kcal
Total: -66.25 3.50 -62.76 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000379335362.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 58.062 kcal
(2) G-P(sol) polarization free energy of solvation -66.255 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.193 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.496 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.759 kcal
(6) G-S(sol) free energy of system = (1) + (5) -4.697 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.19 seconds