Wall clock time and date at job start Mon Mar 30 2020 01:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47166 * 2 1 4 4 C 1.53003 * 109.47312 * 177.05127 * 3 2 1 5 5 N 1.46897 * 115.54889 * 303.31589 * 4 3 2 6 6 C 1.46900 * 111.00009 * 185.40491 * 5 4 3 7 7 C 1.53001 * 109.47242 * 184.11936 * 6 5 4 8 8 C 1.50692 * 109.47163 * 180.02562 * 7 6 5 9 9 H 1.07996 * 120.00319 * 359.97438 * 8 7 6 10 10 C 1.37886 * 119.99801 * 179.97438 * 8 7 6 11 11 N 1.31507 * 120.00226 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99571 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.47354 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.46888 * 120.00477 * 12 10 8 15 15 H 1.48503 * 109.47068 * 239.99873 * 12 10 8 16 16 C 1.52998 * 117.50038 * 88.98434 * 4 3 2 17 17 C 1.52996 * 117.49815 * 157.64405 * 4 3 2 18 18 H 1.09004 * 109.46748 * 180.02562 * 1 2 3 19 19 H 1.09002 * 109.47113 * 299.99744 * 1 2 3 20 20 H 1.08995 * 109.47373 * 60.00182 * 1 2 3 21 21 H 1.08998 * 109.47326 * 239.99546 * 2 1 3 22 22 H 1.09003 * 109.47375 * 119.99472 * 2 1 3 23 23 H 1.08995 * 109.47391 * 57.04754 * 3 2 1 24 24 H 1.09002 * 109.46930 * 297.04971 * 3 2 1 25 25 H 1.00903 * 110.99875 * 309.35690 * 5 4 3 26 26 H 1.08996 * 109.47092 * 304.12056 * 6 5 4 27 27 H 1.09006 * 109.46839 * 64.12082 * 6 5 4 28 28 H 1.09002 * 109.46936 * 300.00421 * 7 6 5 29 29 H 1.08994 * 109.47218 * 59.99613 * 7 6 5 30 30 H 0.96998 * 120.00260 * 179.97438 * 11 10 8 31 31 H 1.09000 * 117.50137 * 214.99961 * 16 4 3 32 32 H 1.09000 * 117.49800 * 0.02562 * 16 4 3 33 33 H 1.09001 * 117.50476 * 359.97438 * 17 4 3 34 34 H 1.09008 * 117.49975 * 144.97315 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5682 1.4432 0.0742 5 7 4.1470 0.7346 1.2235 6 6 5.6054 0.9053 1.2671 7 6 6.1823 0.0721 2.4134 8 6 7.6783 0.2477 2.4585 9 1 8.1687 0.8891 1.7412 10 6 8.4211 -0.4105 3.4157 11 7 7.8241 -1.1918 4.2889 12 14 10.2756 -0.1933 3.4712 13 1 10.6986 0.7294 2.3873 14 1 10.6684 0.3738 4.7862 15 1 10.9341 -1.5111 3.2839 16 6 4.3396 1.3962 -1.2462 17 6 4.2993 2.6896 -0.4286 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8899 21 1 1.8933 -0.5139 -0.8899 22 1 1.8933 -0.5138 0.8900 23 1 1.6341 1.9714 0.8623 24 1 1.7204 1.9408 -0.9153 25 1 3.7215 1.0376 2.0868 26 1 6.0384 0.5739 0.3233 27 1 5.8435 1.9570 1.4268 28 1 5.7493 0.4035 3.3572 29 1 5.9442 -0.9795 2.2538 30 1 8.3467 -1.6552 4.9621 31 1 5.2767 0.8395 -1.2622 32 1 3.7584 1.3652 -2.1678 33 1 3.6917 3.5090 -0.8126 34 1 5.2097 2.9841 0.0937 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379431515.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:11 Heat of formation + Delta-G solvation = 0.740288 kcal Electronic energy + Delta-G solvation = -12480.902886 eV Core-core repulsion = 10413.585592 eV Total energy + Delta-G solvation = -2067.317294 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.75979 -34.33726 -33.38445 -31.93055 -28.71815 -27.18273 -24.04190 -22.35393 -21.46248 -20.47661 -18.95142 -16.39974 -15.69238 -15.08904 -14.39294 -14.33237 -14.16911 -13.26805 -12.76015 -12.63702 -12.28806 -11.93280 -11.53554 -11.31756 -11.10355 -10.94805 -10.88650 -10.60520 -10.54401 -10.26598 -9.84665 -9.72922 -9.35577 -9.11439 -8.34285 -7.59388 -5.99155 -4.01639 3.31629 3.38942 3.43073 4.05741 4.43362 4.68840 4.85709 5.05385 5.13365 5.32282 5.36937 5.39297 5.54479 5.78233 5.84773 5.91564 5.95727 6.01316 6.12570 6.20441 6.36930 6.40677 6.45468 6.52251 6.59396 7.01500 7.51237 7.74182 7.83794 7.98130 8.09730 8.44530 9.05875 9.62171 11.12386 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.054534 B = 0.006768 C = 0.006212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.315431 B = 4136.203210 C = 4506.278351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.072 4.072 4 C 0.058 3.942 5 N -0.649 5.649 6 C 0.060 3.940 7 C 0.026 3.974 8 C -0.521 4.521 9 H 0.054 0.946 10 C 0.058 3.942 11 N -0.893 5.893 12 Si 0.892 3.108 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.284 1.284 16 C -0.174 4.174 17 C -0.229 4.229 18 H 0.051 0.949 19 H 0.051 0.949 20 H 0.047 0.953 21 H 0.059 0.941 22 H 0.076 0.924 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.339 0.661 26 H 0.062 0.938 27 H 0.020 0.980 28 H 0.014 0.986 29 H 0.025 0.975 30 H 0.260 0.740 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.937 4.989 -8.329 14.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.110 4.110 4 C -0.035 4.035 5 N -0.277 5.277 6 C -0.068 4.068 7 C -0.011 4.011 8 C -0.559 4.559 9 H 0.072 0.928 10 C -0.143 4.143 11 N -0.532 5.532 12 Si 0.720 3.280 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.210 1.210 16 C -0.211 4.211 17 C -0.269 4.269 18 H 0.071 0.929 19 H 0.070 0.930 20 H 0.066 0.934 21 H 0.078 0.922 22 H 0.095 0.905 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.158 0.842 26 H 0.080 0.920 27 H 0.038 0.962 28 H 0.032 0.968 29 H 0.043 0.957 30 H 0.070 0.930 31 H 0.117 0.883 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.870 4.246 -8.480 14.426 hybrid contribution 1.245 1.037 0.349 1.657 sum -9.626 5.283 -8.132 13.664 Atomic orbital electron populations 1.21809 0.96692 1.01307 1.01170 1.21386 0.94272 0.96443 1.03327 1.21053 0.91056 0.97533 1.01372 1.21717 0.92720 0.95961 0.93068 1.60365 1.06310 1.57110 1.03963 1.22315 0.84624 0.98211 1.01623 1.19058 0.94735 0.95594 0.91762 1.21206 0.92319 1.27730 1.14689 0.92768 1.25000 0.98537 0.95207 0.95601 1.69980 1.35462 1.29913 1.17890 0.86538 0.85716 0.77915 0.77843 1.19777 1.21019 1.20962 1.23145 1.02833 1.00618 0.94522 1.23635 1.04448 0.92542 1.06242 0.92947 0.93011 0.93359 0.92200 0.90498 0.91944 0.91989 0.84224 0.91997 0.96184 0.96810 0.95665 0.93043 0.88329 0.89235 0.89588 0.88368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 37.16 0.37 -1.18 16 2 C -0.12 -1.45 5.84 -26.73 -0.16 -1.60 16 3 C -0.07 -0.90 5.28 -26.73 -0.14 -1.04 16 4 C 0.06 0.89 2.65 -131.60 -0.35 0.54 16 5 N -0.65 -11.84 6.15 -99.97 -0.61 -12.46 16 6 C 0.06 1.29 4.64 -3.82 -0.02 1.27 16 7 C 0.03 0.69 5.27 -27.89 -0.15 0.54 16 8 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 9 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 10 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 11 N -0.89 -27.20 13.29 55.43 0.74 -26.46 16 12 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 13 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 16 C -0.17 -2.57 9.59 -26.70 -0.26 -2.83 16 17 C -0.23 -3.36 9.52 -26.70 -0.25 -3.61 16 18 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 19 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 20 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 21 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.08 1.09 7.75 -51.93 -0.40 0.69 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 25 H 0.34 5.96 8.84 -39.29 -0.35 5.61 16 26 H 0.06 1.34 6.07 -51.93 -0.32 1.03 16 27 H 0.02 0.43 6.49 -51.93 -0.34 0.09 16 28 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.10 1.62 6.33 -51.93 -0.33 1.29 16 32 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.10 1.59 6.16 -51.92 -0.32 1.27 16 LS Contribution 276.65 15.07 4.17 4.17 Total: -1.00 -29.75 276.65 -7.91 -37.66 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -5.82 Total: 1.85 kcal Atomic # 6 Polarization: -20.24 SS G_CDS: -1.36 Total: -21.61 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 0.12 Total: -38.92 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.75 -7.91 -37.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379431515.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.402 kcal (2) G-P(sol) polarization free energy of solvation -29.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds