Wall clock time and date at job start Mon Mar 30 2020 01:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47166 * 2 1 4 4 C 1.53003 * 109.47312 * 177.05127 * 3 2 1 5 5 N 1.46897 * 115.54889 * 303.31589 * 4 3 2 6 6 C 1.46900 * 111.00009 * 185.40491 * 5 4 3 7 7 C 1.53001 * 109.47242 * 184.11936 * 6 5 4 8 8 C 1.50692 * 109.47163 * 180.02562 * 7 6 5 9 9 H 1.07996 * 120.00319 * 359.97438 * 8 7 6 10 10 C 1.37886 * 119.99801 * 179.97438 * 8 7 6 11 11 N 1.31507 * 120.00226 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99571 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.47354 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.46888 * 120.00477 * 12 10 8 15 15 H 1.48503 * 109.47068 * 239.99873 * 12 10 8 16 16 C 1.52998 * 117.50038 * 88.98434 * 4 3 2 17 17 C 1.52996 * 117.49815 * 157.64405 * 4 3 2 18 18 H 1.09004 * 109.46748 * 180.02562 * 1 2 3 19 19 H 1.09002 * 109.47113 * 299.99744 * 1 2 3 20 20 H 1.08995 * 109.47373 * 60.00182 * 1 2 3 21 21 H 1.08998 * 109.47326 * 239.99546 * 2 1 3 22 22 H 1.09003 * 109.47375 * 119.99472 * 2 1 3 23 23 H 1.08995 * 109.47391 * 57.04754 * 3 2 1 24 24 H 1.09002 * 109.46930 * 297.04971 * 3 2 1 25 25 H 1.00903 * 110.99875 * 309.35690 * 5 4 3 26 26 H 1.08996 * 109.47092 * 304.12056 * 6 5 4 27 27 H 1.09006 * 109.46839 * 64.12082 * 6 5 4 28 28 H 1.09002 * 109.46936 * 300.00421 * 7 6 5 29 29 H 1.08994 * 109.47218 * 59.99613 * 7 6 5 30 30 H 0.96998 * 120.00260 * 179.97438 * 11 10 8 31 31 H 1.09000 * 117.50137 * 214.99961 * 16 4 3 32 32 H 1.09000 * 117.49800 * 0.02562 * 16 4 3 33 33 H 1.09001 * 117.50476 * 359.97438 * 17 4 3 34 34 H 1.09008 * 117.49975 * 144.97315 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5682 1.4432 0.0742 5 7 4.1470 0.7346 1.2235 6 6 5.6054 0.9053 1.2671 7 6 6.1823 0.0721 2.4134 8 6 7.6783 0.2477 2.4585 9 1 8.1687 0.8891 1.7412 10 6 8.4211 -0.4105 3.4157 11 7 7.8241 -1.1918 4.2889 12 14 10.2756 -0.1933 3.4712 13 1 10.6986 0.7294 2.3873 14 1 10.6684 0.3738 4.7862 15 1 10.9341 -1.5111 3.2839 16 6 4.3396 1.3962 -1.2462 17 6 4.2993 2.6896 -0.4286 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8899 21 1 1.8933 -0.5139 -0.8899 22 1 1.8933 -0.5138 0.8900 23 1 1.6341 1.9714 0.8623 24 1 1.7204 1.9408 -0.9153 25 1 3.7215 1.0376 2.0868 26 1 6.0384 0.5739 0.3233 27 1 5.8435 1.9570 1.4268 28 1 5.7493 0.4035 3.3572 29 1 5.9442 -0.9795 2.2538 30 1 8.3467 -1.6552 4.9621 31 1 5.2767 0.8395 -1.2622 32 1 3.7584 1.3652 -2.1678 33 1 3.6917 3.5090 -0.8126 34 1 5.2097 2.9841 0.0937 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379431515.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:11 Heat of formation + Delta-G solvation = -17.583650 kcal Electronic energy + Delta-G solvation = -12481.697472 eV Core-core repulsion = 10413.585592 eV Total energy + Delta-G solvation = -2068.111880 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.03852 -35.97993 -34.79472 -33.70260 -30.54014 -28.30531 -26.00934 -23.50646 -22.78531 -22.07425 -20.23970 -18.50814 -17.14214 -16.47245 -16.31983 -15.63614 -15.46325 -14.43379 -14.34316 -14.21980 -13.63553 -13.33079 -13.02859 -12.88306 -12.57086 -12.50624 -12.41508 -12.08696 -11.82963 -11.54442 -11.45050 -11.27176 -11.09546 -10.97333 -10.57993 -9.04037 -8.22471 -6.34258 1.38911 1.39566 1.52930 2.38800 2.86317 3.10998 3.29277 3.76100 3.91393 4.03776 4.33937 4.37728 4.40265 4.54388 4.64532 4.79520 4.87565 4.90580 4.96103 5.01009 5.12149 5.16685 5.25509 5.34844 5.41192 5.46900 5.61679 5.64638 5.77215 6.12767 6.27346 6.53985 6.82962 7.35228 8.90102 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.054534 B = 0.006768 C = 0.006212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.315431 B = 4136.203210 C = 4506.278351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C -0.065 4.065 4 C 0.046 3.954 5 N -0.657 5.657 6 C 0.082 3.918 7 C 0.033 3.967 8 C -0.544 4.544 9 H 0.058 0.942 10 C 0.001 3.999 11 N -0.932 5.932 12 Si 0.968 3.032 13 H -0.262 1.262 14 H -0.276 1.276 15 H -0.277 1.277 16 C -0.175 4.175 17 C -0.221 4.221 18 H 0.054 0.946 19 H 0.055 0.945 20 H 0.062 0.938 21 H 0.053 0.947 22 H 0.051 0.949 23 H 0.069 0.931 24 H 0.085 0.915 25 H 0.341 0.659 26 H 0.058 0.942 27 H 0.021 0.979 28 H -0.009 1.009 29 H -0.007 1.007 30 H 0.264 0.736 31 H 0.076 0.924 32 H 0.116 0.884 33 H 0.113 0.887 34 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.198 6.133 -9.499 15.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C -0.103 4.103 4 C -0.046 4.046 5 N -0.286 5.286 6 C -0.047 4.047 7 C -0.005 4.005 8 C -0.583 4.583 9 H 0.077 0.923 10 C -0.197 4.197 11 N -0.572 5.572 12 Si 0.792 3.208 13 H -0.186 1.186 14 H -0.202 1.202 15 H -0.203 1.203 16 C -0.213 4.213 17 C -0.261 4.261 18 H 0.073 0.927 19 H 0.074 0.926 20 H 0.081 0.919 21 H 0.072 0.928 22 H 0.070 0.930 23 H 0.088 0.912 24 H 0.104 0.896 25 H 0.160 0.840 26 H 0.076 0.924 27 H 0.040 0.960 28 H 0.010 0.990 29 H 0.011 0.989 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.147 5.400 -9.664 15.710 hybrid contribution 1.282 0.661 0.711 1.608 sum -9.865 6.061 -8.954 14.637 Atomic orbital electron populations 1.21760 0.94738 1.01845 1.02115 1.21346 0.95973 0.96226 1.01803 1.21071 0.88624 0.97717 1.02862 1.21967 0.94442 0.96344 0.91852 1.60242 1.04400 1.58522 1.05412 1.21872 0.86697 0.96996 0.99086 1.18905 0.94430 0.94426 0.92697 1.21611 0.93565 1.28051 1.15061 0.92338 1.25981 1.04124 0.94591 0.94978 1.70111 1.37720 1.30738 1.18596 0.85359 0.78888 0.78225 0.78321 1.18638 1.20155 1.20254 1.23206 1.02194 1.00406 0.95446 1.23633 1.03765 0.93060 1.05614 0.92706 0.92572 0.91856 0.92782 0.93029 0.91223 0.89637 0.83972 0.92366 0.96042 0.99046 0.98874 0.92671 0.90504 0.86563 0.86850 0.90308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.91 71.98 0.71 -1.95 16 2 C -0.12 -2.71 5.84 30.59 0.18 -2.53 16 3 C -0.06 -1.46 5.28 30.60 0.16 -1.30 16 4 C 0.05 1.34 2.65 3.53 0.01 1.35 16 5 N -0.66 -24.21 6.15 -470.19 -2.89 -27.10 16 6 C 0.08 3.59 4.64 86.30 0.40 3.99 16 7 C 0.03 1.81 5.27 29.85 0.16 1.97 16 8 C -0.54 -31.85 9.11 25.60 0.23 -31.62 16 9 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 10 C 0.00 0.07 5.46 84.66 0.46 0.54 16 11 N -0.93 -57.79 13.29 21.45 0.28 -57.50 16 12 Si 0.97 44.91 29.54 68.60 2.03 46.94 16 13 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 14 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 15 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 16 C -0.17 -4.90 9.59 30.62 0.29 -4.61 16 17 C -0.22 -6.05 9.52 30.62 0.29 -5.76 16 18 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 19 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 20 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 21 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 22 H 0.05 1.46 7.75 -2.39 -0.02 1.44 16 23 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.09 1.57 8.10 -2.39 -0.02 1.55 16 25 H 0.34 12.19 8.84 -89.69 -0.79 11.40 16 26 H 0.06 2.58 6.07 -2.39 -0.01 2.57 16 27 H 0.02 0.93 6.49 -2.38 -0.02 0.91 16 28 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 29 H -0.01 -0.44 8.14 -2.39 -0.02 -0.45 16 30 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 31 H 0.08 2.50 6.33 -2.39 -0.02 2.48 16 32 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 33 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.08 2.48 6.16 -2.38 -0.01 2.47 16 Total: -1.00 -64.29 276.65 2.58 -61.70 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.26 Total: 15.87 kcal Atomic # 6 Polarization: -42.81 SS G_CDS: 2.90 Total: -39.91 kcal Atomic # 7 Polarization: -81.99 SS G_CDS: -2.61 Total: -84.60 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -64.29 2.58 -61.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379431515.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.121 kcal (2) G-P(sol) polarization free energy of solvation -64.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds