Wall clock time and date at job start Mon Mar 30 2020 01:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46820 * 2 1 4 4 C 1.53000 * 109.46962 * 185.16633 * 3 2 1 5 5 N 1.46898 * 115.55119 * 302.10372 * 4 3 2 6 6 C 1.46904 * 110.99814 * 279.65406 * 5 4 3 7 7 H 1.08998 * 109.46816 * 338.30097 * 6 5 4 8 8 C 1.52998 * 109.46926 * 98.29969 * 6 5 4 9 9 C 1.50699 * 109.47137 * 218.29752 * 6 5 4 10 10 H 1.07997 * 119.99958 * 0.02562 * 9 6 5 11 11 C 1.37878 * 119.99789 * 180.27569 * 9 6 5 12 12 N 1.31515 * 120.00145 * 359.72618 * 11 9 6 13 13 Si 1.86800 * 119.99763 * 179.72817 * 11 9 6 14 14 H 1.48502 * 109.47511 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47160 * 119.99998 * 13 11 9 16 16 H 1.48500 * 109.47002 * 239.99751 * 13 11 9 17 17 C 1.53003 * 117.51928 * 87.80463 * 4 3 2 18 18 C 1.52994 * 59.99953 * 107.48089 * 17 4 3 19 19 H 1.08998 * 109.47502 * 300.00070 * 1 2 3 20 20 H 1.08997 * 109.47283 * 60.00769 * 1 2 3 21 21 H 1.09003 * 109.46747 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.47089 * 239.99904 * 2 1 3 23 23 H 1.09000 * 109.46781 * 119.99797 * 2 1 3 24 24 H 1.08996 * 109.47423 * 65.16236 * 3 2 1 25 25 H 1.09005 * 109.46858 * 305.16434 * 3 2 1 26 26 H 1.00897 * 110.99962 * 43.60779 * 5 4 3 27 27 H 1.09004 * 109.47538 * 179.97438 * 8 6 5 28 28 H 1.08998 * 109.47690 * 300.00172 * 8 6 5 29 29 H 1.09000 * 109.47251 * 59.99863 * 8 6 5 30 30 H 0.96999 * 119.99595 * 180.02562 * 12 11 9 31 31 H 1.09000 * 117.49672 * 214.97104 * 17 4 3 32 32 H 1.09000 * 117.49992 * 359.97438 * 17 4 3 33 33 H 1.08999 * 117.49906 * 252.50768 * 18 17 4 34 34 H 1.09005 * 117.49985 * 107.49449 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5644 1.4445 -0.1299 5 7 4.2901 0.7076 0.9133 6 6 4.4130 1.5113 2.1368 7 1 4.2969 2.5669 1.8913 8 6 3.3263 1.0963 3.1307 9 6 5.7697 1.2849 2.7524 10 1 6.4708 0.6117 2.2816 11 6 6.1140 1.9333 3.9195 12 7 5.2605 2.7534 4.4926 13 14 7.7930 1.6469 4.6867 14 1 8.5605 0.6863 3.8539 15 1 8.5286 2.9346 4.7628 16 1 7.6244 1.0915 6.0536 17 6 4.1536 1.4342 -1.5419 18 6 4.2238 2.7050 -0.6930 19 1 -0.3634 0.5138 0.8899 20 1 -0.3634 0.5137 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5139 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 1.7541 1.9290 0.9326 25 1 1.6030 1.9823 -0.8402 26 1 3.8466 -0.1781 1.1054 27 1 3.4177 1.6923 4.0389 28 1 2.3450 1.2599 2.6856 29 1 3.4424 0.0407 3.3762 30 1 5.5029 3.2098 5.3135 31 1 5.0797 0.8805 -1.6967 32 1 3.4552 1.4255 -2.3787 33 1 3.5716 3.5328 -0.9712 34 1 5.1961 2.9877 -0.2894 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379435179.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:15 Heat of formation + Delta-G solvation = 5.626231 kcal Electronic energy + Delta-G solvation = -13049.251884 eV Core-core repulsion = 10982.146460 eV Total energy + Delta-G solvation = -2067.105424 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.26546 -34.24530 -33.48999 -31.49048 -27.59304 -26.68839 -25.00504 -22.19683 -21.31728 -20.27557 -18.47696 -16.24598 -15.49722 -14.76766 -14.65646 -13.94927 -13.38697 -13.03982 -12.62028 -12.33970 -11.98295 -11.66877 -11.17880 -11.02559 -10.91213 -10.84973 -10.76199 -10.48354 -10.46350 -10.06200 -9.97934 -9.68338 -9.18212 -8.72472 -8.30276 -7.19591 -5.92928 -3.95493 3.34169 3.41811 3.47542 4.37739 4.49668 5.07771 5.10782 5.25504 5.36222 5.38238 5.60007 5.69602 5.73657 6.04969 6.09728 6.14773 6.17702 6.21184 6.36177 6.52686 6.55677 6.63745 6.82530 6.83103 6.94733 7.16195 7.48960 7.78981 7.96692 8.37254 8.65578 8.68853 9.12503 9.69513 11.13746 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.044401 B = 0.009661 C = 0.008678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.467712 B = 2897.652689 C = 3225.920892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.107 4.107 4 C 0.049 3.951 5 N -0.650 5.650 6 C 0.213 3.787 7 H 0.034 0.966 8 C -0.167 4.167 9 C -0.490 4.490 10 H 0.062 0.938 11 C 0.053 3.947 12 N -0.898 5.898 13 Si 0.895 3.105 14 H -0.273 1.273 15 H -0.286 1.286 16 H -0.286 1.286 17 C -0.172 4.172 18 C -0.166 4.166 19 H 0.052 0.948 20 H 0.049 0.951 21 H 0.050 0.950 22 H 0.060 0.940 23 H 0.063 0.937 24 H 0.067 0.933 25 H 0.056 0.944 26 H 0.327 0.673 27 H 0.087 0.913 28 H 0.009 0.991 29 H 0.026 0.974 30 H 0.258 0.742 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.554 -2.667 -8.036 10.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.146 4.146 4 C -0.044 4.044 5 N -0.279 5.279 6 C 0.106 3.894 7 H 0.051 0.949 8 C -0.226 4.226 9 C -0.529 4.529 10 H 0.080 0.920 11 C -0.147 4.147 12 N -0.539 5.539 13 Si 0.723 3.277 14 H -0.198 1.198 15 H -0.212 1.212 16 H -0.213 1.213 17 C -0.210 4.210 18 C -0.203 4.203 19 H 0.071 0.929 20 H 0.068 0.932 21 H 0.069 0.931 22 H 0.079 0.921 23 H 0.082 0.918 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.145 0.855 27 H 0.106 0.894 28 H 0.028 0.972 29 H 0.045 0.955 30 H 0.067 0.933 31 H 0.112 0.888 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.917 -2.379 -8.098 10.308 hybrid contribution -0.048 -0.096 0.933 0.940 sum -5.965 -2.475 -7.165 9.646 Atomic orbital electron populations 1.21761 0.96370 1.01102 1.01441 1.21444 0.95098 0.97220 1.02080 1.21658 0.94561 0.96624 1.01792 1.21445 0.89949 0.99795 0.93199 1.60666 1.50973 1.05593 1.10698 1.19182 0.94040 0.92748 0.83434 0.94856 1.22456 0.95992 1.00045 1.04100 1.21275 0.99376 1.25443 1.06846 0.92017 1.24954 0.97161 0.95477 0.97092 1.69899 1.34801 1.29493 1.19670 0.86489 0.84382 0.77863 0.78943 1.19796 1.21223 1.21272 1.23032 1.02697 1.01802 0.93440 1.22947 1.02908 0.90892 1.03588 0.92890 0.93163 0.93107 0.92109 0.91841 0.91455 0.92517 0.85470 0.89394 0.97245 0.95470 0.93252 0.88831 0.90113 0.89926 0.88116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.91 37.16 0.37 -1.43 16 2 C -0.12 -1.72 5.54 -26.73 -0.15 -1.87 16 3 C -0.11 -1.71 4.99 -26.73 -0.13 -1.85 16 4 C 0.05 0.90 1.68 -131.60 -0.22 0.68 16 5 N -0.65 -14.04 6.43 -94.25 -0.61 -14.65 16 6 C 0.21 5.39 2.54 -68.86 -0.18 5.22 16 7 H 0.03 0.93 7.05 -51.93 -0.37 0.56 16 8 C -0.17 -4.04 8.90 37.16 0.33 -3.71 16 9 C -0.49 -13.79 8.84 -34.44 -0.30 -14.10 16 10 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 11 C 0.05 1.49 5.30 -17.82 -0.09 1.40 16 12 N -0.90 -26.01 11.31 55.43 0.63 -25.38 16 13 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 14 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 17 C -0.17 -2.79 10.16 -26.73 -0.27 -3.06 16 18 C -0.17 -2.98 9.28 -26.74 -0.25 -3.23 16 19 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 20 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 21 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 23 H 0.06 0.98 7.01 -51.93 -0.36 0.61 16 24 H 0.07 1.20 6.64 -51.93 -0.34 0.85 16 25 H 0.06 0.82 8.11 -51.93 -0.42 0.40 16 26 H 0.33 6.72 6.67 -39.29 -0.26 6.46 16 27 H 0.09 2.37 6.06 -51.93 -0.31 2.06 16 28 H 0.01 0.19 6.34 -51.93 -0.33 -0.14 16 29 H 0.03 0.63 8.13 -51.93 -0.42 0.21 16 30 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 32 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.10 2.04 8.14 -51.93 -0.42 1.62 16 LS Contribution 273.00 15.07 4.11 4.11 Total: -1.00 -28.40 273.00 -7.53 -35.93 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -5.75 Total: 5.12 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: -0.90 Total: -21.95 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.02 Total: -40.03 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -28.40 -7.53 -35.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379435179.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.559 kcal (2) G-P(sol) polarization free energy of solvation -28.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds