Wall clock time and date at job start Mon Mar 30 2020 01:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46820 * 2 1 4 4 C 1.53000 * 109.46962 * 185.16633 * 3 2 1 5 5 N 1.46898 * 115.55119 * 302.10372 * 4 3 2 6 6 C 1.46904 * 110.99814 * 279.65406 * 5 4 3 7 7 H 1.08998 * 109.46816 * 338.30097 * 6 5 4 8 8 C 1.52998 * 109.46926 * 98.29969 * 6 5 4 9 9 C 1.50699 * 109.47137 * 218.29752 * 6 5 4 10 10 H 1.07997 * 119.99958 * 0.02562 * 9 6 5 11 11 C 1.37878 * 119.99789 * 180.27569 * 9 6 5 12 12 N 1.31515 * 120.00145 * 359.72618 * 11 9 6 13 13 Si 1.86800 * 119.99763 * 179.72817 * 11 9 6 14 14 H 1.48502 * 109.47511 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47160 * 119.99998 * 13 11 9 16 16 H 1.48500 * 109.47002 * 239.99751 * 13 11 9 17 17 C 1.53003 * 117.51928 * 87.80463 * 4 3 2 18 18 C 1.52994 * 59.99953 * 107.48089 * 17 4 3 19 19 H 1.08998 * 109.47502 * 300.00070 * 1 2 3 20 20 H 1.08997 * 109.47283 * 60.00769 * 1 2 3 21 21 H 1.09003 * 109.46747 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.47089 * 239.99904 * 2 1 3 23 23 H 1.09000 * 109.46781 * 119.99797 * 2 1 3 24 24 H 1.08996 * 109.47423 * 65.16236 * 3 2 1 25 25 H 1.09005 * 109.46858 * 305.16434 * 3 2 1 26 26 H 1.00897 * 110.99962 * 43.60779 * 5 4 3 27 27 H 1.09004 * 109.47538 * 179.97438 * 8 6 5 28 28 H 1.08998 * 109.47690 * 300.00172 * 8 6 5 29 29 H 1.09000 * 109.47251 * 59.99863 * 8 6 5 30 30 H 0.96999 * 119.99595 * 180.02562 * 12 11 9 31 31 H 1.09000 * 117.49672 * 214.97104 * 17 4 3 32 32 H 1.09000 * 117.49992 * 359.97438 * 17 4 3 33 33 H 1.08999 * 117.49906 * 252.50768 * 18 17 4 34 34 H 1.09005 * 117.49985 * 107.49449 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5644 1.4445 -0.1299 5 7 4.2901 0.7076 0.9133 6 6 4.4130 1.5113 2.1368 7 1 4.2969 2.5669 1.8913 8 6 3.3263 1.0963 3.1307 9 6 5.7697 1.2849 2.7524 10 1 6.4708 0.6117 2.2816 11 6 6.1140 1.9333 3.9195 12 7 5.2605 2.7534 4.4926 13 14 7.7930 1.6469 4.6867 14 1 8.5605 0.6863 3.8539 15 1 8.5286 2.9346 4.7628 16 1 7.6244 1.0915 6.0536 17 6 4.1536 1.4342 -1.5419 18 6 4.2238 2.7050 -0.6930 19 1 -0.3634 0.5138 0.8899 20 1 -0.3634 0.5137 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5139 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 1.7541 1.9290 0.9326 25 1 1.6030 1.9823 -0.8402 26 1 3.8466 -0.1781 1.1054 27 1 3.4177 1.6923 4.0389 28 1 2.3450 1.2599 2.6856 29 1 3.4424 0.0407 3.3762 30 1 5.5029 3.2098 5.3135 31 1 5.0797 0.8805 -1.6967 32 1 3.4552 1.4255 -2.3787 33 1 3.5716 3.5328 -0.9712 34 1 5.1961 2.9877 -0.2894 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379435179.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:15 Heat of formation + Delta-G solvation = -11.416217 kcal Electronic energy + Delta-G solvation = -13049.990900 eV Core-core repulsion = 10982.146460 eV Total energy + Delta-G solvation = -2067.844440 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.75324 -36.15426 -34.64996 -33.49255 -29.36159 -27.99552 -27.11321 -23.58184 -22.59196 -22.08365 -19.99837 -18.31547 -17.03644 -16.69024 -15.97116 -15.38473 -15.11638 -14.30482 -14.29016 -14.06674 -13.37405 -13.22360 -12.88818 -12.76050 -12.56129 -12.31771 -12.24773 -12.20987 -12.04416 -11.85893 -11.53184 -11.34562 -10.91222 -10.46260 -10.32797 -8.93588 -8.07915 -6.18728 1.40081 1.41724 1.54181 2.43700 2.98636 3.19489 3.56577 3.82674 4.09620 4.13215 4.39924 4.47061 4.56193 4.71566 4.84841 4.85469 4.88696 4.92496 5.01351 5.08118 5.14285 5.14964 5.27814 5.40173 5.44280 5.49237 5.52406 5.72347 5.85156 6.33347 6.72787 6.92614 6.97238 7.51167 8.96959 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.044401 B = 0.009661 C = 0.008678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.467712 B = 2897.652689 C = 3225.920892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.118 4.118 3 C -0.099 4.099 4 C 0.028 3.972 5 N -0.657 5.657 6 C 0.223 3.777 7 H 0.001 0.999 8 C -0.152 4.152 9 C -0.512 4.512 10 H 0.050 0.950 11 C 0.007 3.993 12 N -0.922 5.922 13 Si 0.958 3.042 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.279 1.279 17 C -0.143 4.143 18 C -0.180 4.180 19 H 0.045 0.955 20 H 0.064 0.936 21 H 0.063 0.937 22 H 0.071 0.929 23 H 0.045 0.955 24 H 0.043 0.957 25 H 0.079 0.921 26 H 0.333 0.667 27 H 0.059 0.941 28 H 0.030 0.970 29 H 0.028 0.972 30 H 0.260 0.740 31 H 0.086 0.914 32 H 0.116 0.884 33 H 0.103 0.897 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.126 -3.335 -9.219 12.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.155 4.155 3 C -0.138 4.138 4 C -0.065 4.065 5 N -0.287 5.287 6 C 0.115 3.885 7 H 0.019 0.981 8 C -0.212 4.212 9 C -0.551 4.551 10 H 0.068 0.932 11 C -0.191 4.191 12 N -0.563 5.563 13 Si 0.784 3.216 14 H -0.195 1.195 15 H -0.208 1.208 16 H -0.205 1.205 17 C -0.180 4.180 18 C -0.217 4.217 19 H 0.064 0.936 20 H 0.083 0.917 21 H 0.082 0.918 22 H 0.090 0.910 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.098 0.902 26 H 0.151 0.849 27 H 0.078 0.922 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.105 0.895 32 H 0.134 0.866 33 H 0.121 0.879 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.496 -3.054 -9.296 11.744 hybrid contribution 0.126 0.128 1.253 1.266 sum -6.370 -2.925 -8.043 10.669 Atomic orbital electron populations 1.21729 0.94551 1.02166 1.01836 1.21416 0.96652 0.95704 1.01748 1.21581 0.92706 0.98026 1.01511 1.21686 0.91312 0.99958 0.93508 1.60509 1.52612 1.05768 1.09792 1.18869 0.93195 0.91417 0.85021 0.98078 1.22254 0.96891 0.99389 1.02635 1.21561 1.00634 1.25495 1.07412 0.93203 1.25706 1.00642 0.95188 0.97526 1.70021 1.36369 1.29981 1.19933 0.85508 0.80149 0.77817 0.78133 1.19514 1.20750 1.20527 1.23074 1.02699 0.99308 0.92933 1.22948 1.01808 0.92176 1.04778 0.93583 0.91696 0.91761 0.91020 0.93594 0.93790 0.90204 0.84884 0.92244 0.95147 0.95272 0.93116 0.89509 0.86577 0.87875 0.91412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 9.91 71.98 0.71 -2.39 16 2 C -0.12 -3.07 5.54 30.59 0.17 -2.90 16 3 C -0.10 -2.99 4.99 30.59 0.15 -2.84 16 4 C 0.03 0.99 1.68 3.53 0.01 0.99 16 5 N -0.66 -28.46 6.43 -452.10 -2.91 -31.37 16 6 C 0.22 11.53 2.54 44.17 0.11 11.64 16 7 H 0.00 0.07 7.05 -2.39 -0.02 0.06 16 8 C -0.15 -7.49 8.90 71.98 0.64 -6.85 16 9 C -0.51 -29.35 8.84 25.60 0.23 -29.13 16 10 H 0.05 2.91 7.81 -2.91 -0.02 2.88 16 11 C 0.01 0.40 5.30 84.65 0.45 0.85 16 12 N -0.92 -54.26 11.31 21.45 0.24 -54.02 16 13 Si 0.96 45.13 29.54 68.60 2.03 47.16 16 14 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 15 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 16 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 17 C -0.14 -4.29 10.16 30.59 0.31 -3.98 16 18 C -0.18 -6.35 9.28 30.59 0.28 -6.07 16 19 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 20 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 21 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 22 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 23 H 0.05 1.35 7.01 -2.39 -0.02 1.33 16 24 H 0.04 1.52 6.64 -2.39 -0.02 1.51 16 25 H 0.08 2.04 8.11 -2.38 -0.02 2.02 16 26 H 0.33 13.58 6.67 -89.70 -0.60 12.98 16 27 H 0.06 3.27 6.06 -2.39 -0.01 3.25 16 28 H 0.03 1.31 6.34 -2.39 -0.02 1.30 16 29 H 0.03 1.36 8.13 -2.39 -0.02 1.34 16 30 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 31 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 32 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 34 H 0.07 2.83 8.14 -2.38 -0.02 2.81 16 Total: -1.00 -61.11 273.00 2.88 -58.22 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: 0.46 Total: 20.67 kcal Atomic # 6 Polarization: -43.73 SS G_CDS: 3.06 Total: -40.67 kcal Atomic # 7 Polarization: -82.72 SS G_CDS: -2.66 Total: -85.39 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -61.11 2.88 -58.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379435179.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.806 kcal (2) G-P(sol) polarization free energy of solvation -61.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds