Wall clock time and date at job start Mon Mar 30 2020 01:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46967 * 2 1 4 4 N 1.46902 * 115.54969 * 302.59052 * 3 2 1 5 5 C 1.46904 * 110.99650 * 185.46818 * 4 3 2 6 6 C 1.53008 * 109.46831 * 184.25293 * 5 4 3 7 7 C 1.52995 * 109.47093 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.47230 * 179.97438 * 7 6 5 9 9 H 1.08001 * 119.99782 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00218 * 180.02562 * 8 7 6 11 11 N 1.31512 * 119.99947 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00152 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.47202 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.47082 * 119.99826 * 12 10 8 15 15 H 1.48497 * 109.47289 * 239.99736 * 12 10 8 16 16 C 1.53001 * 117.50151 * 88.26116 * 3 2 1 17 17 C 1.52998 * 117.49984 * 156.91871 * 3 2 1 18 18 H 1.08996 * 109.47543 * 56.96206 * 1 2 3 19 19 H 1.08998 * 109.46965 * 176.97234 * 1 2 3 20 20 H 1.09006 * 109.46866 * 296.96531 * 1 2 3 21 21 H 1.08994 * 109.46690 * 240.00391 * 2 1 3 22 22 H 1.08995 * 109.47058 * 119.99829 * 2 1 3 23 23 H 1.00902 * 111.00136 * 61.51700 * 4 3 2 24 24 H 1.08997 * 109.47533 * 64.25580 * 5 4 3 25 25 H 1.09001 * 109.47084 * 304.24796 * 5 4 3 26 26 H 1.09007 * 109.46647 * 59.99973 * 6 5 4 27 27 H 1.08995 * 109.46990 * 300.00041 * 6 5 4 28 28 H 1.09003 * 109.47599 * 300.00322 * 7 6 5 29 29 H 1.08999 * 109.46745 * 60.00085 * 7 6 5 30 30 H 0.97002 * 120.00183 * 179.97438 * 11 10 8 31 31 H 1.09003 * 117.50180 * 215.00689 * 16 3 2 32 32 H 1.09000 * 117.49342 * 0.02562 * 16 3 2 33 33 H 1.08999 * 117.49702 * 359.97438 * 17 3 2 34 34 H 1.09002 * 117.49887 * 144.97397 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5781 2.2778 -1.1167 5 6 2.2260 3.5960 -1.0911 6 6 1.6436 4.4721 -2.2021 7 6 2.3179 5.8452 -2.1751 8 6 1.7447 6.7079 -3.2697 9 1 0.9761 6.3161 -3.9194 10 6 2.2016 7.9974 -3.4418 11 7 3.1372 8.4746 -2.6504 12 14 1.4906 9.0670 -4.7983 13 1 0.4585 8.3016 -5.5425 14 1 0.8732 10.2783 -4.2011 15 1 2.5746 9.4716 -5.7291 16 6 2.2367 2.1223 1.3565 17 6 3.4525 1.6924 0.5320 18 1 -0.3634 0.5602 -0.8614 19 1 -0.3633 -1.0262 -0.0543 20 1 -0.3633 0.4660 0.9160 21 1 1.8933 -0.5138 -0.8900 22 1 1.8933 -0.5138 0.8900 23 1 0.5732 2.3686 -1.1088 24 1 3.2982 3.4770 -1.2467 25 1 2.0493 4.0690 -0.1251 26 1 0.5713 4.5911 -2.0464 27 1 1.8203 3.9991 -3.1680 28 1 2.1409 6.3181 -1.2090 29 1 3.3902 5.7265 -2.3304 30 1 3.4590 9.3816 -2.7717 31 1 2.0232 3.1894 1.4204 32 1 2.0031 1.5417 2.2489 33 1 4.0184 0.8292 0.8825 34 1 4.0393 2.4764 0.0532 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379741500.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:49 Heat of formation + Delta-G solvation = 0.906028 kcal Electronic energy + Delta-G solvation = -12389.435642 eV Core-core repulsion = 10322.125535 eV Total energy + Delta-G solvation = -2067.310107 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.99676 -34.60791 -32.64845 -31.91971 -30.16887 -26.12271 -24.04039 -22.64226 -22.09091 -20.18059 -18.95145 -16.32856 -15.89414 -15.21945 -14.74857 -14.42277 -13.99806 -13.49787 -12.95533 -12.37405 -12.25034 -11.95277 -11.75988 -11.43122 -11.12722 -11.08455 -10.86315 -10.52393 -10.43236 -10.39016 -9.95887 -9.64810 -9.33141 -9.02903 -8.33150 -7.94997 -5.98040 -4.00097 3.32612 3.39877 3.44547 3.85955 4.33262 4.49800 4.71140 4.87711 5.00186 5.26252 5.37866 5.44974 5.51677 5.61735 5.79798 5.87936 5.89421 5.95085 6.06641 6.10194 6.23443 6.28770 6.38778 6.72870 6.80219 7.14160 7.37982 7.65381 7.70378 7.84877 8.02350 8.45676 9.07294 9.63949 11.13504 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.067529 B = 0.006011 C = 0.005673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.538524 B = 4657.287533 C = 4934.510009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.076 4.076 3 C 0.056 3.944 4 N -0.651 5.651 5 C 0.052 3.948 6 C -0.108 4.108 7 C 0.022 3.978 8 C -0.518 4.518 9 H 0.056 0.944 10 C 0.055 3.945 11 N -0.897 5.897 12 Si 0.892 3.108 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.284 1.284 16 C -0.224 4.224 17 C -0.176 4.176 18 H 0.061 0.939 19 H 0.053 0.947 20 H 0.051 0.949 21 H 0.072 0.928 22 H 0.063 0.937 23 H 0.341 0.659 24 H 0.070 0.930 25 H 0.030 0.970 26 H 0.044 0.956 27 H 0.056 0.944 28 H 0.013 0.987 29 H 0.016 0.984 30 H 0.259 0.741 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.899 -14.245 6.494 15.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.114 4.114 3 C -0.036 4.036 4 N -0.281 5.281 5 C -0.076 4.076 6 C -0.146 4.146 7 C -0.015 4.015 8 C -0.556 4.556 9 H 0.074 0.926 10 C -0.145 4.145 11 N -0.536 5.536 12 Si 0.720 3.280 13 H -0.197 1.197 14 H -0.211 1.211 15 H -0.210 1.210 16 C -0.264 4.264 17 C -0.213 4.213 18 H 0.080 0.920 19 H 0.072 0.928 20 H 0.070 0.930 21 H 0.090 0.910 22 H 0.082 0.918 23 H 0.161 0.839 24 H 0.089 0.911 25 H 0.048 0.952 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.032 0.968 29 H 0.034 0.966 30 H 0.069 0.931 31 H 0.114 0.886 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.368 -14.351 6.046 15.752 hybrid contribution -0.663 1.229 0.121 1.402 sum -3.031 -13.122 6.166 14.812 Atomic orbital electron populations 1.21727 0.95605 1.01475 1.02073 1.20943 0.95900 0.92552 1.01974 1.21715 0.98757 0.94379 0.88788 1.60363 1.11361 1.15186 1.41164 1.22299 0.99394 0.87179 0.98768 1.21646 0.99170 0.97131 0.96658 1.19061 0.95843 0.89617 0.97013 1.21295 1.21263 0.97635 1.15449 0.92611 1.25032 0.95130 0.98060 0.96316 1.69978 1.28949 1.16339 1.38359 0.86536 0.79021 0.80421 0.82038 1.19720 1.21054 1.21001 1.23614 1.04328 1.01907 0.96569 1.23228 0.91093 1.03570 1.03452 0.92042 0.92799 0.92972 0.90959 0.91822 0.83924 0.91143 0.95173 0.93680 0.92520 0.96825 0.96568 0.93096 0.88571 0.89219 0.88871 0.88106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.69 37.16 0.36 -1.12 16 2 C -0.08 -0.82 6.01 -26.73 -0.16 -0.98 16 3 C 0.06 0.74 2.69 -131.60 -0.35 0.39 16 4 N -0.65 -10.02 6.62 -99.96 -0.66 -10.68 16 5 C 0.05 0.93 4.72 -3.82 -0.02 0.91 16 6 C -0.11 -2.30 5.37 -26.73 -0.14 -2.44 16 7 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 8 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 9 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 10 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 11 N -0.90 -27.39 13.29 55.43 0.74 -26.66 16 12 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 13 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 14 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 16 C -0.22 -2.88 9.60 -26.70 -0.26 -3.13 16 17 C -0.18 -2.30 9.52 -26.70 -0.25 -2.55 16 18 H 0.06 0.64 7.01 -51.93 -0.36 0.28 16 19 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 20 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 21 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 22 H 0.06 0.60 8.11 -51.93 -0.42 0.18 16 23 H 0.34 4.95 7.46 -39.29 -0.29 4.66 16 24 H 0.07 1.31 6.50 -51.93 -0.34 0.97 16 25 H 0.03 0.55 6.07 -51.93 -0.32 0.23 16 26 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.10 1.37 6.34 -51.93 -0.33 1.04 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.10 1.45 6.16 -51.93 -0.32 1.13 16 LS Contribution 274.88 15.07 4.14 4.14 Total: -1.00 -30.07 274.88 -7.91 -37.97 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -5.73 Total: 0.55 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: -1.38 Total: -22.27 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: 0.07 Total: -37.34 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.07 -7.91 -37.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379741500.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.877 kcal (2) G-P(sol) polarization free energy of solvation -30.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds