Wall clock time and date at job start Mon Mar 30 2020 01:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46967 * 2 1 4 4 N 1.46902 * 115.54969 * 302.59052 * 3 2 1 5 5 C 1.46904 * 110.99650 * 185.46818 * 4 3 2 6 6 C 1.53008 * 109.46831 * 184.25293 * 5 4 3 7 7 C 1.52995 * 109.47093 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.47230 * 179.97438 * 7 6 5 9 9 H 1.08001 * 119.99782 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00218 * 180.02562 * 8 7 6 11 11 N 1.31512 * 119.99947 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00152 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.47202 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.47082 * 119.99826 * 12 10 8 15 15 H 1.48497 * 109.47289 * 239.99736 * 12 10 8 16 16 C 1.53001 * 117.50151 * 88.26116 * 3 2 1 17 17 C 1.52998 * 117.49984 * 156.91871 * 3 2 1 18 18 H 1.08996 * 109.47543 * 56.96206 * 1 2 3 19 19 H 1.08998 * 109.46965 * 176.97234 * 1 2 3 20 20 H 1.09006 * 109.46866 * 296.96531 * 1 2 3 21 21 H 1.08994 * 109.46690 * 240.00391 * 2 1 3 22 22 H 1.08995 * 109.47058 * 119.99829 * 2 1 3 23 23 H 1.00902 * 111.00136 * 61.51700 * 4 3 2 24 24 H 1.08997 * 109.47533 * 64.25580 * 5 4 3 25 25 H 1.09001 * 109.47084 * 304.24796 * 5 4 3 26 26 H 1.09007 * 109.46647 * 59.99973 * 6 5 4 27 27 H 1.08995 * 109.46990 * 300.00041 * 6 5 4 28 28 H 1.09003 * 109.47599 * 300.00322 * 7 6 5 29 29 H 1.08999 * 109.46745 * 60.00085 * 7 6 5 30 30 H 0.97002 * 120.00183 * 179.97438 * 11 10 8 31 31 H 1.09003 * 117.50180 * 215.00689 * 16 3 2 32 32 H 1.09000 * 117.49342 * 0.02562 * 16 3 2 33 33 H 1.08999 * 117.49702 * 359.97438 * 17 3 2 34 34 H 1.09002 * 117.49887 * 144.97397 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5781 2.2778 -1.1167 5 6 2.2260 3.5960 -1.0911 6 6 1.6436 4.4721 -2.2021 7 6 2.3179 5.8452 -2.1751 8 6 1.7447 6.7079 -3.2697 9 1 0.9761 6.3161 -3.9194 10 6 2.2016 7.9974 -3.4418 11 7 3.1372 8.4746 -2.6504 12 14 1.4906 9.0670 -4.7983 13 1 0.4585 8.3016 -5.5425 14 1 0.8732 10.2783 -4.2011 15 1 2.5746 9.4716 -5.7291 16 6 2.2367 2.1223 1.3565 17 6 3.4525 1.6924 0.5320 18 1 -0.3634 0.5602 -0.8614 19 1 -0.3633 -1.0262 -0.0543 20 1 -0.3633 0.4660 0.9160 21 1 1.8933 -0.5138 -0.8900 22 1 1.8933 -0.5138 0.8900 23 1 0.5732 2.3686 -1.1088 24 1 3.2982 3.4770 -1.2467 25 1 2.0493 4.0690 -0.1251 26 1 0.5713 4.5911 -2.0464 27 1 1.8203 3.9991 -3.1680 28 1 2.1409 6.3181 -1.2090 29 1 3.3902 5.7265 -2.3304 30 1 3.4590 9.3816 -2.7717 31 1 2.0232 3.1894 1.4204 32 1 2.0031 1.5417 2.2489 33 1 4.0184 0.8292 0.8825 34 1 4.0393 2.4764 0.0532 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379741500.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:48 Heat of formation + Delta-G solvation = -17.701946 kcal Electronic energy + Delta-G solvation = -12390.242544 eV Core-core repulsion = 10322.125535 eV Total energy + Delta-G solvation = -2068.117010 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.11412 -36.37578 -34.52743 -32.82012 -31.90978 -27.98953 -25.21880 -24.11877 -23.28112 -21.95747 -20.04253 -18.50792 -17.06720 -16.64482 -16.40330 -16.05652 -14.87805 -14.87010 -14.47385 -13.88888 -13.62452 -13.54901 -13.23654 -12.84173 -12.58813 -12.40118 -12.29979 -12.20390 -11.89543 -11.65035 -11.40329 -11.31426 -11.10980 -10.94333 -10.57822 -9.17844 -8.21867 -6.33328 1.39517 1.39947 1.53733 2.40057 2.81942 3.11335 3.15161 3.74742 3.86680 3.99443 4.16514 4.30610 4.45413 4.58147 4.65415 4.66600 4.73751 4.91319 4.93624 5.08954 5.12325 5.17886 5.19544 5.21865 5.30286 5.48248 5.49929 5.70827 5.82827 6.05338 6.24651 6.44920 6.83545 7.36271 8.90474 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.067529 B = 0.006011 C = 0.005673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.538524 B = 4657.287533 C = 4934.510009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.071 4.071 3 C 0.049 3.951 4 N -0.653 5.653 5 C 0.067 3.933 6 C -0.093 4.093 7 C 0.026 3.974 8 C -0.543 4.543 9 H 0.060 0.940 10 C -0.002 4.002 11 N -0.935 5.935 12 Si 0.968 3.032 13 H -0.262 1.262 14 H -0.277 1.277 15 H -0.277 1.277 16 C -0.220 4.220 17 C -0.182 4.182 18 H 0.050 0.950 19 H 0.070 0.930 20 H 0.053 0.947 21 H 0.070 0.930 22 H 0.083 0.917 23 H 0.347 0.653 24 H 0.061 0.939 25 H 0.026 0.974 26 H 0.051 0.949 27 H 0.053 0.947 28 H -0.010 1.010 29 H -0.010 1.010 30 H 0.264 0.736 31 H 0.077 0.923 32 H 0.112 0.888 33 H 0.116 0.884 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.884 -15.315 6.314 17.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.109 4.109 3 C -0.043 4.043 4 N -0.283 5.283 5 C -0.062 4.062 6 C -0.131 4.131 7 C -0.012 4.012 8 C -0.581 4.581 9 H 0.078 0.922 10 C -0.199 4.199 11 N -0.575 5.575 12 Si 0.792 3.208 13 H -0.186 1.186 14 H -0.202 1.202 15 H -0.203 1.203 16 C -0.259 4.259 17 C -0.220 4.220 18 H 0.070 0.930 19 H 0.089 0.911 20 H 0.072 0.928 21 H 0.089 0.911 22 H 0.101 0.899 23 H 0.167 0.833 24 H 0.080 0.920 25 H 0.045 0.955 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.008 0.992 29 H 0.009 0.991 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.130 0.870 33 H 0.134 0.866 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.362 -15.442 5.871 16.859 hybrid contribution -0.327 1.547 0.217 1.596 sum -3.688 -13.895 6.088 15.612 Atomic orbital electron populations 1.21717 0.94870 1.02428 1.01712 1.20972 0.96500 0.90594 1.02835 1.21959 0.98901 0.95331 0.88114 1.60282 1.11690 1.13572 1.42803 1.21961 0.98830 0.88200 0.97164 1.21396 0.99079 0.94826 0.97831 1.18957 0.94676 0.92266 0.95264 1.21720 1.21663 0.98551 1.16201 0.92176 1.26013 0.95346 0.99618 0.98941 1.70108 1.30203 1.17003 1.40183 0.85357 0.78478 0.78310 0.78653 1.18555 1.20242 1.20268 1.23607 1.03974 1.01106 0.97240 1.23296 0.91189 1.03904 1.03563 0.93047 0.91139 0.92777 0.91138 0.89895 0.83265 0.92029 0.95547 0.93004 0.92793 0.99170 0.99141 0.92725 0.90440 0.86971 0.86570 0.90152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.69 71.98 0.70 -1.87 16 2 C -0.07 -1.35 6.01 30.60 0.18 -1.17 16 3 C 0.05 1.22 2.69 3.53 0.01 1.23 16 4 N -0.65 -19.58 6.62 -470.15 -3.11 -22.69 16 5 C 0.07 2.45 4.72 86.31 0.41 2.85 16 6 C -0.09 -4.02 5.37 30.60 0.16 -3.85 16 7 C 0.03 1.42 4.97 29.85 0.15 1.57 16 8 C -0.54 -31.83 9.11 25.60 0.23 -31.60 16 9 H 0.06 3.39 7.74 -2.91 -0.02 3.36 16 10 C 0.00 -0.10 5.46 84.65 0.46 0.37 16 11 N -0.93 -58.00 13.29 21.45 0.28 -57.72 16 12 Si 0.97 44.99 29.54 68.60 2.03 47.02 16 13 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 14 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 15 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 16 C -0.22 -5.32 9.60 30.62 0.29 -5.02 16 17 C -0.18 -4.54 9.52 30.62 0.29 -4.25 16 18 H 0.05 0.98 7.01 -2.39 -0.02 0.96 16 19 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 20 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 21 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.08 1.28 8.11 -2.39 -0.02 1.26 16 23 H 0.35 9.70 7.46 -89.69 -0.67 9.03 16 24 H 0.06 2.35 6.50 -2.39 -0.02 2.33 16 25 H 0.03 0.98 6.07 -2.39 -0.01 0.96 16 26 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 27 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 28 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 29 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 30 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 31 H 0.08 2.18 6.34 -2.39 -0.02 2.16 16 32 H 0.11 2.20 8.14 -2.39 -0.02 2.19 16 33 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.08 2.34 6.16 -2.39 -0.01 2.32 16 Total: -1.00 -64.25 274.88 2.48 -61.77 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 0.39 Total: 13.37 kcal Atomic # 6 Polarization: -44.63 SS G_CDS: 2.89 Total: -41.74 kcal Atomic # 7 Polarization: -77.58 SS G_CDS: -2.83 Total: -80.41 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -64.25 2.48 -61.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379741500.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.067 kcal (2) G-P(sol) polarization free energy of solvation -64.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds