Wall clock time and date at job start Mon Mar 30 2020 01:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46992 * 2 1 4 4 C 1.46498 * 120.00239 * 269.72138 * 3 2 1 5 5 C 1.50702 * 109.47034 * 90.00162 * 4 3 2 6 6 H 1.08002 * 119.99777 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00392 * 180.02562 * 5 4 3 8 8 N 1.31508 * 120.00442 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99582 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.46981 * 90.00397 * 9 7 5 11 11 H 1.48505 * 109.47048 * 210.00448 * 9 7 5 12 12 H 1.48500 * 109.47259 * 330.00249 * 9 7 5 13 13 C 1.37485 * 119.99593 * 90.00096 * 3 2 1 14 14 N 1.29318 * 122.86589 * 180.02562 * 13 3 2 15 15 C 1.46947 * 110.08934 * 179.97438 * 14 13 3 16 16 C 1.54167 * 104.00582 * 0.02562 * 15 14 13 17 17 N 1.36776 * 122.87246 * 359.73561 * 13 3 2 18 18 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 19 19 H 1.09000 * 109.47214 * 300.00285 * 1 2 3 20 20 H 1.09008 * 109.47142 * 59.99450 * 1 2 3 21 21 H 1.09000 * 109.46884 * 240.00615 * 2 1 3 22 22 H 1.09000 * 109.46955 * 119.99931 * 2 1 3 23 23 H 1.08993 * 109.47575 * 210.00600 * 4 3 2 24 24 H 1.09001 * 109.46870 * 330.00556 * 4 3 2 25 25 H 0.97007 * 120.00563 * 179.97438 * 8 7 5 26 26 H 1.09001 * 110.51863 * 118.63256 * 15 14 13 27 27 H 1.08994 * 110.52202 * 241.23142 * 15 14 13 28 28 H 1.09007 * 110.66013 * 118.44145 * 16 15 14 29 29 H 1.09002 * 110.65943 * 241.38737 * 16 15 14 30 30 H 0.97001 * 125.81582 * 359.97438 * 17 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2683 2.0699 -1.2687 5 6 1.0144 2.7796 -1.7106 6 1 0.1209 2.7237 -1.1065 7 6 1.0080 3.5003 -2.8859 8 7 -0.0860 4.1201 -3.2713 9 14 2.5537 3.5976 -3.9303 10 1 2.5626 2.4789 -4.9067 11 1 2.5779 4.8912 -4.6593 12 1 3.7494 3.5003 -3.0550 13 6 2.2474 2.0293 1.1907 14 7 2.6775 3.2472 1.2554 15 6 2.8220 3.6575 2.6591 16 6 2.3836 2.4142 3.4583 17 7 2.0346 1.4430 2.4079 18 1 -0.3633 -1.0276 -0.0005 19 1 -0.3634 0.5139 0.8900 20 1 -0.3634 0.5140 -0.8900 21 1 1.8933 -0.5137 -0.8901 22 1 1.8933 -0.5138 0.8900 23 1 3.0696 2.7967 -1.1359 24 1 2.5598 1.3420 -2.0258 25 1 -0.0905 4.6275 -4.0980 26 1 3.8601 3.9064 2.8794 27 1 2.1722 4.5045 2.8784 28 1 3.2037 2.0432 4.0731 29 1 1.5139 2.6406 4.0752 30 1 1.7107 0.5405 2.5544 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381861244.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:35 Heat of formation + Delta-G solvation = 25.106632 kcal Electronic energy + Delta-G solvation = -12854.486591 eV Core-core repulsion = 10684.685558 eV Total energy + Delta-G solvation = -2169.801034 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.122 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.84881 -37.55982 -34.66977 -32.80186 -31.52004 -30.50744 -28.25278 -24.40044 -23.70703 -22.77655 -20.13539 -19.04785 -18.70724 -16.76594 -16.52529 -15.84780 -15.45243 -14.72501 -14.61400 -14.29847 -14.17391 -13.49894 -13.13894 -12.96115 -12.93548 -12.71996 -12.46328 -12.30834 -11.87219 -11.78480 -11.51390 -10.71774 -10.28750 -9.28144 -8.39914 -8.22459 -6.23951 1.36930 1.41635 1.53281 1.98331 2.24341 2.39919 3.04511 3.13574 3.84024 4.10780 4.33225 4.44777 4.53758 4.55953 4.74708 4.80843 4.82279 4.94515 5.11922 5.14010 5.14864 5.47846 5.55022 5.61507 6.05392 6.25741 6.52056 6.76965 7.34110 7.39013 7.69601 8.94671 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.036396 B = 0.012147 C = 0.010533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.133297 B = 2304.546761 C = 2657.759608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.125 3.875 3 N -0.604 5.604 4 C 0.250 3.750 5 C -0.513 4.513 6 H 0.027 0.973 7 C 0.006 3.994 8 N -0.953 5.953 9 Si 0.946 3.054 10 H -0.257 1.257 11 H -0.287 1.287 12 H -0.253 1.253 13 C 0.598 3.402 14 N -0.690 5.690 15 C 0.037 3.963 16 C 0.098 3.902 17 N -0.763 5.763 18 H 0.089 0.911 19 H 0.038 0.962 20 H 0.032 0.968 21 H 0.086 0.914 22 H 0.092 0.908 23 H 0.026 0.974 24 H 0.038 0.962 25 H 0.264 0.736 26 H 0.077 0.923 27 H 0.062 0.938 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.031 -9.759 10.851 15.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.002 3.998 3 N -0.325 5.325 4 C 0.127 3.873 5 C -0.552 4.552 6 H 0.045 0.955 7 C -0.190 4.190 8 N -0.595 5.595 9 Si 0.769 3.231 10 H -0.181 1.181 11 H -0.213 1.213 12 H -0.177 1.177 13 C 0.235 3.765 14 N -0.435 5.435 15 C -0.094 4.094 16 C -0.028 4.028 17 N -0.415 5.415 18 H 0.108 0.892 19 H 0.057 0.943 20 H 0.051 0.949 21 H 0.104 0.896 22 H 0.110 0.890 23 H 0.044 0.956 24 H 0.056 0.944 25 H 0.073 0.927 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.113 0.887 29 H 0.099 0.901 30 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 6.244 -8.910 10.172 14.894 hybrid contribution -0.386 -0.168 -0.007 0.421 sum 5.858 -9.078 10.164 14.834 Atomic orbital electron populations 1.22173 0.96815 1.02159 1.00941 1.21511 0.93990 0.80787 1.03519 1.45876 1.70834 1.13731 1.02038 1.19186 0.94997 0.92123 0.80975 1.21609 0.97491 1.30314 1.05778 0.95497 1.25804 0.99446 0.94654 0.99133 1.70068 1.29995 1.35088 1.24307 0.85739 0.80225 0.78115 0.79003 1.18147 1.21272 1.17684 1.19629 0.87682 0.87690 0.81501 1.74608 1.39515 1.10913 1.18476 1.22854 1.01107 0.97386 0.88094 1.22504 1.01197 0.89213 0.89900 1.45796 1.75121 1.17586 1.02955 0.89203 0.94260 0.94881 0.89557 0.89001 0.95584 0.94392 0.92719 0.90484 0.91995 0.88724 0.90131 0.74319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.16 10.24 71.98 0.74 -4.43 16 2 C 0.12 3.81 6.14 86.38 0.53 4.34 16 3 N -0.60 -25.07 2.53 -714.88 -1.81 -26.88 16 4 C 0.25 12.35 4.34 85.63 0.37 12.72 16 5 C -0.51 -30.42 9.49 25.60 0.24 -30.18 16 6 H 0.03 1.80 7.66 -2.91 -0.02 1.78 16 7 C 0.01 0.37 5.47 84.65 0.46 0.83 16 8 N -0.95 -61.52 13.96 21.44 0.30 -61.22 16 9 Si 0.95 45.46 27.47 68.60 1.88 47.34 16 10 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 11 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 12 H -0.25 -11.68 6.54 99.48 0.65 -11.03 16 13 C 0.60 24.28 8.17 261.32 2.14 26.41 16 14 N -0.69 -31.44 10.63 -347.79 -3.70 -35.14 16 15 C 0.04 1.23 8.04 86.69 0.70 1.93 16 16 C 0.10 2.44 8.11 86.63 0.70 3.14 16 17 N -0.76 -22.40 6.24 -347.18 -2.17 -24.56 16 18 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 19 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 20 H 0.03 1.35 7.28 -2.38 -0.02 1.33 16 21 H 0.09 2.44 7.89 -2.39 -0.02 2.42 16 22 H 0.09 2.09 6.77 -2.39 -0.02 2.07 16 23 H 0.03 1.39 6.55 -2.39 -0.02 1.38 16 24 H 0.04 1.73 7.32 -2.39 -0.02 1.71 16 25 H 0.26 15.92 8.31 -92.70 -0.77 15.15 16 26 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 29 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.42 9.56 7.54 -92.71 -0.70 8.86 16 Total: -1.00 -75.25 249.76 0.76 -74.48 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 0.37 Total: 11.20 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: 5.88 Total: 14.78 kcal Atomic # 7 Polarization: -140.43 SS G_CDS: -7.37 Total: -147.80 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.88 Total: 47.34 kcal Total: -75.25 0.76 -74.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381861244.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.587 kcal (2) G-P(sol) polarization free energy of solvation -75.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds