Wall clock time and date at job start Mon Mar 30 2020 01:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53000 * 109.47264 * 2 1 4 4 C 1.52997 * 112.94012 * 309.67019 * 3 2 1 5 5 C 1.53938 * 113.82313 * 81.32923 * 3 2 1 6 6 N 1.47957 * 86.18233 * 90.64925 * 5 3 2 7 7 C 1.46901 * 110.99907 * 137.57926 * 6 5 3 8 8 C 1.52997 * 109.47177 * 90.64319 * 7 6 5 9 9 C 1.50700 * 109.47321 * 180.02562 * 8 7 6 10 10 H 1.07999 * 119.99666 * 359.97438 * 9 8 7 11 11 C 1.37873 * 120.00040 * 179.97438 * 9 8 7 12 12 N 1.31521 * 120.00192 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00132 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46880 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.47295 * 119.99709 * 13 11 9 16 16 H 1.48495 * 109.47538 * 240.00337 * 13 11 9 17 17 C 1.47968 * 90.76187 * 24.68863 * 6 5 3 18 18 H 1.08994 * 109.47217 * 179.97438 * 1 2 3 19 19 H 1.09000 * 109.46707 * 299.99700 * 1 2 3 20 20 H 1.09001 * 109.46444 * 59.99408 * 1 2 3 21 21 H 1.09000 * 109.46707 * 240.00300 * 2 1 3 22 22 H 1.08992 * 109.47012 * 120.00581 * 2 1 3 23 23 H 1.09002 * 109.47153 * 288.42996 * 4 3 2 24 24 H 1.09001 * 109.46832 * 168.43187 * 4 3 2 25 25 H 1.09004 * 109.47261 * 48.43168 * 4 3 2 26 26 H 1.09005 * 113.75269 * 204.96518 * 5 3 2 27 27 H 1.08997 * 113.76137 * 336.32804 * 5 3 2 28 28 H 1.09004 * 109.47315 * 210.63831 * 7 6 5 29 29 H 1.09000 * 109.47159 * 330.64094 * 7 6 5 30 30 H 1.09010 * 109.46951 * 299.99771 * 8 7 6 31 31 H 1.08993 * 109.47123 * 59.99433 * 8 7 6 32 32 H 0.97003 * 120.00018 * 179.97438 * 12 11 9 33 33 H 1.09004 * 113.75439 * 220.99523 * 17 6 5 34 34 H 1.08991 * 113.75996 * 89.63145 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.3909 2.3045 -1.0845 5 6 2.0472 2.0995 1.3921 6 7 3.4287 1.5850 1.5189 7 6 4.3134 2.5941 2.1164 8 6 4.3236 2.4271 3.6372 9 6 5.2307 3.4626 4.2503 10 1 5.7485 4.1689 3.6184 11 6 5.3995 3.5083 5.6179 12 7 4.7686 2.6484 6.3875 13 14 6.5245 4.7914 6.3778 14 1 7.1110 5.6335 5.3044 15 1 5.7431 5.6472 7.3063 16 1 7.6133 4.1141 7.1267 17 6 3.5745 1.5571 0.0467 18 1 -0.3633 -1.0276 -0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3632 0.5139 -0.8900 21 1 1.8933 -0.5138 -0.8900 22 1 1.8934 -0.5139 0.8899 23 1 1.7683 2.0040 -2.0620 24 1 1.6325 3.3528 -0.9084 25 1 0.3095 2.1711 -1.0559 26 1 1.9846 3.1874 1.3645 27 1 1.3449 1.6495 2.0937 28 1 5.3245 2.4654 1.7301 29 1 3.9516 3.5905 1.8627 30 1 3.3125 2.5558 4.0237 31 1 4.6853 1.4307 3.8909 32 1 4.8877 2.6804 7.3497 33 1 4.0924 0.6736 -0.3266 34 1 3.9585 2.4862 -0.3743 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381871957.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:11 Heat of formation + Delta-G solvation = 10.185494 kcal Electronic energy + Delta-G solvation = -12684.968714 eV Core-core repulsion = 10618.060995 eV Total energy + Delta-G solvation = -2066.907719 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.99999 -34.44194 -32.86326 -30.47030 -28.77622 -25.85786 -25.77775 -23.66007 -21.94490 -20.02911 -17.98222 -16.33649 -15.40246 -14.97231 -14.68116 -14.27243 -13.92532 -13.59122 -12.64410 -12.51895 -12.14976 -11.97104 -11.90595 -11.58219 -11.21797 -11.01408 -10.87777 -10.63478 -10.47754 -10.15172 -9.96912 -9.70979 -9.30927 -9.01797 -8.31254 -8.09795 -5.96096 -3.98787 3.32828 3.39904 3.44020 4.40640 4.52220 4.57922 4.91497 5.23130 5.31243 5.39517 5.44196 5.65746 5.73688 5.78057 5.85141 5.88712 5.97683 5.99264 6.04838 6.16535 6.20720 6.37443 6.38582 6.49323 6.62133 6.92295 7.15365 7.56969 7.80448 7.94116 8.12837 8.47164 9.09133 9.64763 11.15316 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.070414 B = 0.006727 C = 0.006463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.554634 B = 4161.583871 C = 4331.008866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.094 4.094 3 C -0.092 4.092 4 C -0.141 4.141 5 C 0.015 3.985 6 N -0.476 5.476 7 C 0.029 3.971 8 C 0.033 3.967 9 C -0.522 4.522 10 H 0.053 0.947 11 C 0.057 3.943 12 N -0.893 5.893 13 Si 0.892 3.108 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.284 1.284 17 C 0.005 3.995 18 H 0.050 0.950 19 H 0.055 0.945 20 H 0.053 0.947 21 H 0.058 0.942 22 H 0.075 0.925 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.081 0.919 28 H 0.057 0.943 29 H 0.028 0.972 30 H 0.014 0.986 31 H 0.023 0.977 32 H 0.259 0.741 33 H 0.079 0.921 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.885 -2.409 -13.348 15.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.131 4.131 3 C -0.093 4.093 4 C -0.198 4.198 5 C -0.114 4.114 6 N -0.198 5.198 7 C -0.098 4.098 8 C -0.005 4.005 9 C -0.561 4.561 10 H 0.072 0.928 11 C -0.144 4.144 12 N -0.533 5.533 13 Si 0.720 3.280 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.125 4.125 18 H 0.069 0.931 19 H 0.074 0.926 20 H 0.072 0.928 21 H 0.077 0.923 22 H 0.093 0.907 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.100 0.900 28 H 0.075 0.925 29 H 0.046 0.954 30 H 0.033 0.967 31 H 0.041 0.959 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.750 -3.035 -12.761 14.752 hybrid contribution 0.634 1.578 0.187 1.711 sum -6.116 -1.457 -12.574 14.058 Atomic orbital electron populations 1.21823 0.96173 1.01158 1.01771 1.21205 0.95252 0.94283 1.02367 1.22326 0.95321 0.96217 0.95433 1.21843 1.00844 0.99091 0.98046 1.24022 0.93603 0.98169 0.95561 1.68542 1.02424 1.40721 1.08097 1.22834 0.95502 0.91471 1.00030 1.18964 0.96993 0.97333 0.87191 1.21265 1.27137 1.15807 0.91845 0.92837 1.25007 0.96035 0.95976 0.97363 1.69996 1.42700 1.36190 1.04375 0.86545 0.80658 0.81593 0.79249 1.19805 1.21028 1.20969 1.23991 0.95364 1.01031 0.92065 0.93083 0.92587 0.92762 0.92301 0.90662 0.92738 0.92836 0.92084 0.91739 0.90010 0.92467 0.95363 0.96719 0.95882 0.93082 0.90225 0.92023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.36 37.16 0.35 -1.26 16 2 C -0.09 -1.16 5.40 -26.73 -0.14 -1.30 16 3 C -0.09 -1.24 1.04 -153.58 -0.16 -1.40 16 4 C -0.14 -1.57 8.92 37.16 0.33 -1.24 16 5 C 0.02 0.26 7.05 -2.77 -0.02 0.24 16 6 N -0.48 -9.13 6.02 -237.94 -1.43 -10.57 16 7 C 0.03 0.65 4.73 -3.82 -0.02 0.63 16 8 C 0.03 0.89 5.28 -27.88 -0.15 0.75 16 9 C -0.52 -15.27 9.11 -34.44 -0.31 -15.59 16 10 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -27.62 13.29 55.43 0.74 -26.89 16 13 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 14 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 15 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 17 C 0.00 0.07 7.09 -2.76 -0.02 0.05 16 18 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 19 H 0.06 0.62 8.06 -51.93 -0.42 0.21 16 20 H 0.05 0.51 6.35 -51.93 -0.33 0.18 16 21 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.07 1.07 8.00 -51.93 -0.42 0.66 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.05 0.61 7.94 -51.93 -0.41 0.20 16 25 H 0.06 0.62 6.03 -51.93 -0.31 0.30 16 26 H 0.06 1.08 7.29 -51.93 -0.38 0.70 16 27 H 0.08 1.38 8.02 -51.93 -0.42 0.97 16 28 H 0.06 1.26 8.08 -51.93 -0.42 0.84 16 29 H 0.03 0.61 7.38 -51.93 -0.38 0.23 16 30 H 0.01 0.42 8.14 -51.92 -0.42 0.00 16 31 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 33 H 0.08 1.15 8.10 -51.93 -0.42 0.73 16 34 H 0.06 0.91 7.88 -51.93 -0.41 0.50 16 LS Contribution 273.49 15.07 4.12 4.12 Total: -1.00 -30.78 273.49 -7.81 -38.59 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: -5.97 Total: -4.78 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: -0.24 Total: -17.53 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: -0.70 Total: -37.45 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.78 -7.81 -38.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381871957.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.772 kcal (2) G-P(sol) polarization free energy of solvation -30.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds