Wall clock time and date at job start Mon Mar 30 2020 01:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53000 * 109.47264 * 2 1 4 4 C 1.52997 * 112.94012 * 309.67019 * 3 2 1 5 5 C 1.53938 * 113.82313 * 81.32923 * 3 2 1 6 6 N 1.47957 * 86.18233 * 90.64925 * 5 3 2 7 7 C 1.46901 * 110.99907 * 137.57926 * 6 5 3 8 8 C 1.52997 * 109.47177 * 90.64319 * 7 6 5 9 9 C 1.50700 * 109.47321 * 180.02562 * 8 7 6 10 10 H 1.07999 * 119.99666 * 359.97438 * 9 8 7 11 11 C 1.37873 * 120.00040 * 179.97438 * 9 8 7 12 12 N 1.31521 * 120.00192 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00132 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46880 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.47295 * 119.99709 * 13 11 9 16 16 H 1.48495 * 109.47538 * 240.00337 * 13 11 9 17 17 C 1.47968 * 90.76187 * 24.68863 * 6 5 3 18 18 H 1.08994 * 109.47217 * 179.97438 * 1 2 3 19 19 H 1.09000 * 109.46707 * 299.99700 * 1 2 3 20 20 H 1.09001 * 109.46444 * 59.99408 * 1 2 3 21 21 H 1.09000 * 109.46707 * 240.00300 * 2 1 3 22 22 H 1.08992 * 109.47012 * 120.00581 * 2 1 3 23 23 H 1.09002 * 109.47153 * 288.42996 * 4 3 2 24 24 H 1.09001 * 109.46832 * 168.43187 * 4 3 2 25 25 H 1.09004 * 109.47261 * 48.43168 * 4 3 2 26 26 H 1.09005 * 113.75269 * 204.96518 * 5 3 2 27 27 H 1.08997 * 113.76137 * 336.32804 * 5 3 2 28 28 H 1.09004 * 109.47315 * 210.63831 * 7 6 5 29 29 H 1.09000 * 109.47159 * 330.64094 * 7 6 5 30 30 H 1.09010 * 109.46951 * 299.99771 * 8 7 6 31 31 H 1.08993 * 109.47123 * 59.99433 * 8 7 6 32 32 H 0.97003 * 120.00018 * 179.97438 * 12 11 9 33 33 H 1.09004 * 113.75439 * 220.99523 * 17 6 5 34 34 H 1.08991 * 113.75996 * 89.63145 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.3909 2.3045 -1.0845 5 6 2.0472 2.0995 1.3921 6 7 3.4287 1.5850 1.5189 7 6 4.3134 2.5941 2.1164 8 6 4.3236 2.4271 3.6372 9 6 5.2307 3.4626 4.2503 10 1 5.7485 4.1689 3.6184 11 6 5.3995 3.5083 5.6179 12 7 4.7686 2.6484 6.3875 13 14 6.5245 4.7914 6.3778 14 1 7.1110 5.6335 5.3044 15 1 5.7431 5.6472 7.3063 16 1 7.6133 4.1141 7.1267 17 6 3.5745 1.5571 0.0467 18 1 -0.3633 -1.0276 -0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3632 0.5139 -0.8900 21 1 1.8933 -0.5138 -0.8900 22 1 1.8934 -0.5139 0.8899 23 1 1.7683 2.0040 -2.0620 24 1 1.6325 3.3528 -0.9084 25 1 0.3095 2.1711 -1.0559 26 1 1.9846 3.1874 1.3645 27 1 1.3449 1.6495 2.0937 28 1 5.3245 2.4654 1.7301 29 1 3.9516 3.5905 1.8627 30 1 3.3125 2.5558 4.0237 31 1 4.6853 1.4307 3.8909 32 1 4.8877 2.6804 7.3497 33 1 4.0924 0.6736 -0.3266 34 1 3.9585 2.4862 -0.3743 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381871957.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:11 Heat of formation + Delta-G solvation = -10.197260 kcal Electronic energy + Delta-G solvation = -12685.852577 eV Core-core repulsion = 10618.060995 eV Total energy + Delta-G solvation = -2067.791582 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.30632 -36.07805 -34.70104 -32.17703 -30.00717 -27.52219 -27.10927 -25.15189 -23.41165 -21.82185 -19.11175 -18.56941 -16.71642 -16.57218 -16.31601 -15.80958 -15.11901 -14.94261 -14.26376 -13.97614 -13.65264 -13.31669 -13.28983 -12.86452 -12.74785 -12.61889 -12.46865 -12.12249 -11.89457 -11.52036 -11.48552 -11.37135 -11.10940 -10.87973 -10.59313 -9.58967 -8.22663 -6.35591 1.38177 1.39393 1.52798 2.38450 3.10082 3.13103 3.40373 3.81240 4.13771 4.24460 4.25351 4.46343 4.55160 4.57991 4.69460 4.76803 4.79685 4.86894 4.89572 5.03532 5.05873 5.13742 5.28690 5.34542 5.39608 5.42615 5.47613 5.63176 5.75492 5.78512 6.14190 6.30564 6.81888 7.34173 8.89974 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.070414 B = 0.006727 C = 0.006463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.554634 B = 4161.583871 C = 4331.008866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.073 4.073 4 C -0.136 4.136 5 C 0.007 3.993 6 N -0.503 5.503 7 C 0.047 3.953 8 C 0.041 3.959 9 C -0.546 4.546 10 H 0.061 0.939 11 C -0.001 4.001 12 N -0.934 5.934 13 Si 0.971 3.029 14 H -0.261 1.261 15 H -0.276 1.276 16 H -0.276 1.276 17 C 0.005 3.995 18 H 0.061 0.939 19 H 0.044 0.956 20 H 0.071 0.929 21 H 0.077 0.923 22 H 0.048 0.952 23 H 0.073 0.927 24 H 0.050 0.950 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.032 0.968 30 H -0.015 1.015 31 H -0.012 1.012 32 H 0.264 0.736 33 H 0.089 0.911 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.808 -1.602 -14.953 16.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.131 4.131 3 C -0.074 4.074 4 C -0.193 4.193 5 C -0.122 4.122 6 N -0.225 5.225 7 C -0.081 4.081 8 C 0.003 3.997 9 C -0.585 4.585 10 H 0.079 0.921 11 C -0.199 4.199 12 N -0.574 5.574 13 Si 0.795 3.205 14 H -0.185 1.185 15 H -0.202 1.202 16 H -0.202 1.202 17 C -0.123 4.123 18 H 0.080 0.920 19 H 0.063 0.937 20 H 0.090 0.910 21 H 0.096 0.904 22 H 0.067 0.933 23 H 0.092 0.908 24 H 0.069 0.931 25 H 0.093 0.907 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.050 0.950 30 H 0.003 0.997 31 H 0.006 0.994 32 H 0.073 0.927 33 H 0.108 0.892 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.680 -2.232 -14.388 16.019 hybrid contribution 0.577 1.263 0.693 1.552 sum -6.103 -0.969 -13.695 15.024 Atomic orbital electron populations 1.21802 0.94660 1.02038 1.02077 1.21212 0.96589 0.93301 1.01990 1.22239 0.94132 0.97043 0.93967 1.21817 1.01536 0.98276 0.97703 1.24101 0.91978 0.98253 0.97864 1.68475 1.03139 1.39929 1.11004 1.22483 0.96499 0.92637 0.96521 1.18793 0.94733 0.95094 0.91030 1.21674 1.27711 1.16421 0.92670 0.92111 1.26045 0.97628 0.98326 0.97908 1.70139 1.44197 1.38118 1.04930 0.85310 0.78289 0.78497 0.78387 1.18451 1.20160 1.20180 1.24113 0.97177 1.01953 0.89085 0.92022 0.93708 0.90969 0.90431 0.93269 0.90837 0.93099 0.90713 0.91907 0.91188 0.92392 0.94988 0.99689 0.99392 0.92681 0.89222 0.91098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.36 71.99 0.67 -2.16 16 2 C -0.09 -2.15 5.40 30.60 0.17 -1.99 16 3 C -0.07 -1.85 1.04 -51.54 -0.05 -1.90 16 4 C -0.14 -2.61 8.92 71.98 0.64 -1.97 16 5 C 0.01 0.23 7.05 86.41 0.61 0.84 16 6 N -0.50 -19.55 6.02 -906.72 -5.46 -25.00 16 7 C 0.05 2.12 4.73 86.30 0.41 2.53 16 8 C 0.04 2.34 5.28 29.85 0.16 2.50 16 9 C -0.55 -32.56 9.11 25.60 0.23 -32.33 16 10 H 0.06 3.45 7.74 -2.91 -0.02 3.42 16 11 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 12 N -0.93 -59.06 13.29 21.45 0.28 -58.77 16 13 Si 0.97 45.34 29.54 68.60 2.03 47.37 16 14 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 15 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 16 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 17 C 0.01 0.15 7.09 86.40 0.61 0.77 16 18 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 19 H 0.04 0.95 8.06 -2.39 -0.02 0.93 16 20 H 0.07 1.13 6.35 -2.39 -0.02 1.11 16 21 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 22 H 0.05 1.39 8.00 -2.39 -0.02 1.37 16 23 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.05 1.02 7.94 -2.39 -0.02 1.00 16 25 H 0.07 1.25 6.03 -2.38 -0.01 1.24 16 26 H 0.06 2.11 7.29 -2.38 -0.02 2.09 16 27 H 0.07 2.46 8.02 -2.39 -0.02 2.44 16 28 H 0.06 2.57 8.08 -2.39 -0.02 2.55 16 29 H 0.03 1.40 7.38 -2.39 -0.02 1.38 16 30 H -0.02 -0.95 8.14 -2.38 -0.02 -0.97 16 31 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 32 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 33 H 0.09 2.43 8.10 -2.38 -0.02 2.41 16 34 H 0.07 1.96 7.88 -2.39 -0.02 1.94 16 Total: -1.00 -67.35 273.49 1.80 -65.55 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: 1.03 Total: 4.19 kcal Atomic # 6 Polarization: -37.24 SS G_CDS: 3.91 Total: -33.33 kcal Atomic # 7 Polarization: -78.61 SS G_CDS: -5.17 Total: -83.78 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -67.35 1.80 -65.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381871957.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.356 kcal (2) G-P(sol) polarization free energy of solvation -67.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds