Wall clock time and date at job start Mon Mar 30 2020 01:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46732 * 2 1 4 4 C 1.53008 * 109.47054 * 176.08605 * 3 2 1 5 5 N 1.46498 * 110.53991 * 306.12738 * 4 3 2 6 6 C 1.36936 * 119.99833 * 296.99968 * 5 4 3 7 7 H 1.07996 * 120.00258 * 6.12856 * 6 5 4 8 8 C 1.38814 * 119.99659 * 186.12903 * 6 5 4 9 9 N 1.31621 * 120.00205 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99982 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47202 * 59.99329 * 10 8 6 12 12 H 1.48493 * 109.47497 * 179.97438 * 10 8 6 13 13 H 1.48509 * 109.46935 * 300.00175 * 10 8 6 14 14 C 1.54894 * 110.48284 * 68.73848 * 4 3 2 15 15 C 1.54889 * 102.74695 * 156.61802 * 14 4 3 16 16 C 1.54258 * 104.19811 * 322.05959 * 15 14 4 17 17 C 1.53872 * 106.60117 * 23.60745 * 16 15 14 18 18 H 1.09001 * 109.46750 * 180.02562 * 1 2 3 19 19 H 1.09001 * 109.46939 * 299.99612 * 1 2 3 20 20 H 1.08994 * 109.47525 * 59.99758 * 1 2 3 21 21 H 1.09001 * 109.46939 * 240.00388 * 2 1 3 22 22 H 1.08994 * 109.47525 * 120.00241 * 2 1 3 23 23 H 1.09001 * 109.47117 * 56.09441 * 3 2 1 24 24 H 1.08997 * 109.47638 * 296.08479 * 3 2 1 25 25 H 0.97001 * 119.99969 * 117.00196 * 5 4 3 26 26 H 0.97000 * 119.99956 * 180.02562 * 9 8 6 27 27 H 1.08995 * 110.75490 * 274.93536 * 14 4 3 28 28 H 1.09001 * 110.75522 * 38.30945 * 14 4 3 29 29 H 1.09004 * 110.48740 * 203.37737 * 15 14 4 30 30 H 1.09007 * 110.48379 * 80.73653 * 15 14 4 31 31 H 1.09004 * 110.02959 * 264.32261 * 16 15 14 32 32 H 1.09000 * 110.03619 * 142.89195 * 16 15 14 33 33 H 1.09003 * 110.03724 * 240.71876 * 17 16 15 34 34 H 1.09006 * 110.03336 * 119.28357 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5668 1.4437 0.0985 5 7 4.0079 0.6607 1.2554 6 6 3.6615 1.0540 2.5205 7 1 2.9827 1.8820 2.6618 8 6 4.1828 0.3882 3.6214 9 7 5.0097 -0.6213 3.4492 10 14 3.7098 0.9241 5.3472 11 1 2.2396 0.8029 5.5177 12 1 4.3958 0.0586 6.3398 13 1 4.1174 2.3368 5.5560 14 6 4.1944 0.8874 -1.2038 15 6 5.6145 1.5055 -1.1900 16 6 5.4029 2.9273 -0.6305 17 6 4.1009 2.8882 0.1887 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8899 21 1 1.8933 -0.5138 -0.8900 22 1 1.8934 -0.5138 0.8899 23 1 1.6205 1.9761 0.8529 24 1 1.7350 1.9357 -0.9229 25 1 4.5453 -0.1362 1.1253 26 1 5.3737 -1.0867 4.2185 27 1 4.2464 -0.2009 -1.1732 28 1 3.6350 1.2241 -2.0766 29 1 6.0212 1.5496 -2.2003 30 1 6.2734 0.9328 -0.5372 31 1 5.3075 3.6404 -1.4494 32 1 6.2393 3.2046 0.0110 33 1 3.3735 3.5822 -0.2326 34 1 4.3056 3.1463 1.2277 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382336820.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:34 Heat of formation + Delta-G solvation = -34.233395 kcal Electronic energy + Delta-G solvation = -13333.355419 eV Core-core repulsion = 11264.521552 eV Total energy + Delta-G solvation = -2068.833867 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.90828 -35.44202 -34.82392 -32.13672 -29.52819 -29.40032 -26.09607 -25.14838 -22.36609 -21.01920 -19.89826 -18.85624 -16.90205 -16.12686 -15.93228 -15.66030 -15.19394 -14.82940 -13.99151 -13.79691 -13.35934 -13.12065 -12.88455 -12.73102 -12.33891 -12.29060 -12.18849 -11.84009 -11.77116 -11.53285 -11.46753 -11.30922 -11.12997 -10.93321 -10.72657 -8.83724 -7.85965 -5.10260 1.46221 1.47758 1.53458 2.60335 3.45850 3.83597 3.90636 4.00254 4.27224 4.35616 4.38587 4.52944 4.68592 4.77597 4.91171 4.95162 4.95793 5.06363 5.08947 5.14491 5.16221 5.23626 5.29155 5.40368 5.49812 5.53448 5.61375 5.72305 5.75905 5.79684 6.39170 7.43259 8.25266 8.46987 9.37939 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.026544 B = 0.014114 C = 0.010862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.616090 B = 1983.355621 C = 2577.085100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.113 4.113 3 C -0.110 4.110 4 C 0.185 3.815 5 N -0.717 5.717 6 C -0.208 4.208 7 H 0.068 0.932 8 C -0.079 4.079 9 N -0.972 5.972 10 Si 0.958 3.042 11 H -0.282 1.282 12 H -0.299 1.299 13 H -0.283 1.283 14 C -0.114 4.114 15 C -0.117 4.117 16 C -0.112 4.112 17 C -0.134 4.134 18 H 0.053 0.947 19 H 0.041 0.959 20 H 0.066 0.934 21 H 0.058 0.942 22 H 0.038 0.962 23 H 0.035 0.965 24 H 0.074 0.926 25 H 0.369 0.631 26 H 0.246 0.754 27 H 0.054 0.946 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.038 0.962 31 H 0.080 0.920 32 H 0.041 0.959 33 H 0.069 0.931 34 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.488 4.896 -10.636 12.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.150 4.150 3 C -0.150 4.150 4 C 0.095 3.905 5 N -0.356 5.356 6 C -0.340 4.340 7 H 0.086 0.914 8 C -0.271 4.271 9 N -0.624 5.624 10 Si 0.788 3.212 11 H -0.208 1.208 12 H -0.226 1.226 13 H -0.209 1.209 14 C -0.152 4.152 15 C -0.154 4.154 16 C -0.149 4.149 17 C -0.173 4.173 18 H 0.072 0.928 19 H 0.060 0.940 20 H 0.085 0.915 21 H 0.077 0.923 22 H 0.057 0.943 23 H 0.054 0.946 24 H 0.092 0.908 25 H 0.201 0.799 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.111 0.889 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.099 0.901 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.554 5.014 -10.497 12.492 hybrid contribution 0.240 -0.244 1.552 1.589 sum -4.314 4.769 -8.945 11.017 Atomic orbital electron populations 1.21726 0.95433 1.01381 1.01491 1.21322 0.95660 0.97129 1.00930 1.21904 0.96274 0.96580 1.00221 1.20767 0.92355 0.90392 0.87012 1.42497 1.62574 1.29500 1.01013 1.19317 1.19031 1.11109 0.84550 0.91433 1.25368 1.01045 0.99822 1.00833 1.69802 1.37708 1.25432 1.29433 0.85430 0.77416 0.77137 0.81184 1.20843 1.22603 1.20910 1.22655 0.96111 0.99469 0.96977 1.22256 0.96849 0.95851 1.00459 1.21995 0.96779 0.97320 0.98845 1.22629 0.97360 0.98139 0.99220 0.92802 0.94005 0.91472 0.92318 0.94344 0.94600 0.90771 0.79920 0.94524 0.92745 0.88947 0.89940 0.94326 0.90143 0.93988 0.91285 0.94390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.09 9.91 71.98 0.71 -3.37 16 2 C -0.11 -3.91 5.60 30.59 0.17 -3.74 16 3 C -0.11 -3.83 3.97 30.60 0.12 -3.71 16 4 C 0.18 7.04 0.56 4.68 0.00 7.04 16 5 N -0.72 -35.26 4.12 -298.48 -1.23 -36.50 16 6 C -0.21 -11.39 8.37 84.03 0.70 -10.69 16 7 H 0.07 3.64 7.35 -2.91 -0.02 3.62 16 8 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 9 N -0.97 -60.18 13.07 21.65 0.28 -59.89 16 10 Si 0.96 47.22 29.55 68.60 2.03 49.25 16 11 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 12 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 13 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 14 C -0.11 -3.63 5.18 31.89 0.17 -3.47 16 15 C -0.12 -3.63 6.79 31.67 0.21 -3.42 16 16 C -0.11 -3.51 6.80 31.31 0.21 -3.30 16 17 C -0.13 -4.85 5.99 31.32 0.19 -4.66 16 18 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 19 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 20 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 21 H 0.06 1.87 7.67 -2.39 -0.02 1.85 16 22 H 0.04 1.67 7.32 -2.39 -0.02 1.65 16 23 H 0.04 1.37 7.63 -2.39 -0.02 1.35 16 24 H 0.07 2.11 8.05 -2.39 -0.02 2.09 16 25 H 0.37 19.95 7.69 -92.71 -0.71 19.24 16 26 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 27 H 0.05 1.83 8.04 -2.39 -0.02 1.81 16 28 H 0.09 2.38 7.99 -2.39 -0.02 2.37 16 29 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 30 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 32 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.07 2.15 7.84 -2.39 -0.02 2.13 16 34 H 0.04 1.63 7.07 -2.38 -0.02 1.61 16 Total: -1.00 -61.88 268.70 4.37 -57.50 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: 0.33 Total: 23.08 kcal Atomic # 6 Polarization: -36.40 SS G_CDS: 2.96 Total: -33.44 kcal Atomic # 7 Polarization: -95.44 SS G_CDS: -0.95 Total: -96.39 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Total: -61.88 4.37 -57.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382336820.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.271 kcal (2) G-P(sol) polarization free energy of solvation -61.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds