Wall clock time and date at job start Mon Mar 30 2020 01:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46906 * 115.55103 * 2 1 4 4 C 1.46901 * 110.99793 * 34.41956 * 3 2 1 5 5 C 1.53000 * 109.46769 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.46886 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.46886 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.46912 * 179.97438 * 7 6 5 9 9 H 1.08009 * 120.00339 * 0.02562 * 8 7 6 10 10 C 1.37874 * 120.00310 * 179.97438 * 8 7 6 11 11 N 1.31519 * 119.99776 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00473 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47112 * 60.00220 * 12 10 8 14 14 H 1.48500 * 109.47454 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47261 * 300.00048 * 12 10 8 16 16 C 1.53004 * 117.49889 * 145.67244 * 2 1 3 17 17 C 1.52997 * 117.49780 * 214.33305 * 2 1 3 18 18 H 1.09000 * 109.47002 * 85.57981 * 1 2 3 19 19 H 1.08997 * 109.47271 * 205.58369 * 1 2 3 20 20 H 1.09010 * 109.47094 * 325.58302 * 1 2 3 21 21 H 1.00899 * 110.99995 * 270.46353 * 3 2 1 22 22 H 1.09002 * 109.47401 * 59.99808 * 4 3 2 23 23 H 1.09001 * 109.46874 * 299.99821 * 4 3 2 24 24 H 1.09001 * 109.47194 * 299.99524 * 5 4 3 25 25 H 1.08992 * 109.47399 * 59.99697 * 5 4 3 26 26 H 1.09001 * 109.47109 * 299.99380 * 6 5 4 27 27 H 1.09002 * 109.47508 * 59.99571 * 6 5 4 28 28 H 1.08992 * 109.47098 * 299.99158 * 7 6 5 29 29 H 1.09001 * 109.47583 * 60.00267 * 7 6 5 30 30 H 0.96998 * 120.00187 * 179.97438 * 11 10 8 31 31 H 1.09000 * 117.49736 * 215.00452 * 16 2 1 32 32 H 1.09003 * 117.49764 * 0.02562 * 16 2 1 33 33 H 1.09004 * 117.49950 * 359.97437 * 17 2 1 34 34 H 1.09003 * 117.50040 * 144.99809 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.1636 1.3254 0.0000 4 6 1.3699 2.2883 0.7752 5 6 2.0597 3.6538 0.7516 6 6 1.2334 4.6565 1.5595 7 6 1.9229 6.0221 1.5354 8 6 1.1087 7.0100 2.3306 9 1 0.1914 6.6951 2.8061 10 6 1.5352 8.3154 2.4522 11 7 2.6528 8.6985 1.8744 12 14 0.5264 9.5397 3.4385 13 1 0.4099 9.0684 4.8418 14 1 1.1954 10.8653 3.4150 15 1 -0.8284 9.6590 2.8423 16 6 2.2364 -1.1208 0.7653 17 6 2.2364 -1.1207 -0.7654 18 1 -0.3633 0.0792 -1.0246 19 1 -0.3633 -0.9269 0.4438 20 1 -0.3634 0.8478 0.5809 21 1 2.3127 1.6549 -0.9419 22 1 1.2835 1.9422 1.8052 23 1 0.3759 2.3761 0.3368 24 1 3.0539 3.5663 1.1897 25 1 2.1458 3.9996 -0.2784 26 1 0.2390 4.7442 1.1218 27 1 1.1477 4.3104 2.5896 28 1 2.9173 5.9349 1.9728 29 1 2.0081 6.3681 0.5052 30 1 2.9528 9.6171 1.9596 31 1 3.1713 -0.8747 1.2689 32 1 1.6112 -1.8584 1.2685 33 1 1.6111 -1.8582 -1.2687 34 1 3.1713 -0.8746 -1.2690 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385326998.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:18 Heat of formation + Delta-G solvation = -0.783142 kcal Electronic energy + Delta-G solvation = -12106.211720 eV Core-core repulsion = 10038.828365 eV Total energy + Delta-G solvation = -2067.383355 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.60421 -35.35266 -33.22487 -31.45479 -28.49808 -27.74128 -24.33881 -22.55550 -21.38937 -20.11739 -19.28655 -16.27525 -15.92179 -15.43552 -14.77637 -14.42880 -14.03108 -13.23778 -13.01163 -12.75244 -12.34137 -11.98473 -11.63895 -11.51986 -11.34424 -10.96102 -10.63624 -10.54494 -10.40948 -10.38038 -9.86014 -9.59289 -9.22619 -8.98306 -8.33731 -8.29479 -5.95197 -3.97488 3.35936 3.40042 3.42654 3.67753 4.04870 4.49839 4.67781 4.87179 4.98304 5.37140 5.40286 5.47027 5.54042 5.57186 5.64189 5.68025 5.83730 5.90470 6.05353 6.11687 6.20585 6.33201 6.54610 6.85822 6.99938 7.11110 7.27786 7.44149 7.73537 7.89922 8.05937 8.48679 9.09813 9.66185 11.16173 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.090141 B = 0.005015 C = 0.004874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 310.549245 B = 5581.454014 C = 5743.616404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.034 3.966 3 N -0.655 5.655 4 C 0.059 3.941 5 C -0.116 4.116 6 C -0.108 4.108 7 C 0.021 3.979 8 C -0.521 4.521 9 H 0.053 0.947 10 C 0.056 3.944 11 N -0.897 5.897 12 Si 0.892 3.108 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.277 1.277 16 C -0.162 4.162 17 C -0.175 4.175 18 H 0.057 0.943 19 H 0.060 0.940 20 H 0.072 0.928 21 H 0.341 0.659 22 H 0.070 0.930 23 H 0.033 0.967 24 H 0.064 0.936 25 H 0.054 0.946 26 H 0.044 0.956 27 H 0.047 0.953 28 H 0.016 0.984 29 H 0.014 0.986 30 H 0.260 0.740 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.658 -16.865 -4.307 17.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.058 4.058 3 N -0.285 5.285 4 C -0.069 4.069 5 C -0.154 4.154 6 C -0.147 4.147 7 C -0.016 4.016 8 C -0.559 4.559 9 H 0.072 0.928 10 C -0.145 4.145 11 N -0.536 5.536 12 Si 0.720 3.280 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.203 1.203 16 C -0.200 4.200 17 C -0.213 4.213 18 H 0.076 0.924 19 H 0.079 0.921 20 H 0.091 0.909 21 H 0.160 0.840 22 H 0.088 0.912 23 H 0.051 0.949 24 H 0.083 0.917 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.034 0.966 29 H 0.033 0.967 30 H 0.070 0.930 31 H 0.117 0.883 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.113 -16.838 -3.811 17.393 hybrid contribution -1.208 0.916 -0.075 1.518 sum -3.320 -15.922 -3.886 16.722 Atomic orbital electron populations 1.21859 0.93687 1.02954 1.02119 1.21507 0.91327 0.87284 1.05694 1.60417 1.48424 1.00899 1.18800 1.22146 0.94678 0.92133 0.97983 1.21655 1.00129 0.92849 1.00814 1.21586 0.98262 0.96776 0.98039 1.19091 0.95750 0.89769 0.97008 1.21259 1.08024 0.94654 1.31966 0.92831 1.25031 0.95125 0.98468 0.95872 1.69961 1.21736 1.17618 1.44287 0.86668 0.80305 0.80391 0.80685 1.20257 1.21297 1.20297 1.23170 1.02904 1.00046 0.93886 1.23120 1.02514 1.00624 0.95034 0.92383 0.92067 0.90914 0.84039 0.91199 0.94862 0.91715 0.92754 0.93682 0.93431 0.96601 0.96736 0.93002 0.88312 0.89158 0.88993 0.88482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.48 37.16 0.35 -1.19 16 2 C 0.03 0.39 2.80 -131.60 -0.37 0.02 16 3 N -0.66 -8.75 6.71 -99.96 -0.67 -9.42 16 4 C 0.06 0.87 4.70 -3.82 -0.02 0.85 16 5 C -0.12 -2.05 5.47 -26.73 -0.15 -2.20 16 6 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 7 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 8 C -0.52 -15.15 9.11 -34.44 -0.31 -15.47 16 9 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 10 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 11 N -0.90 -27.54 13.29 55.43 0.74 -26.80 16 12 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 C -0.16 -1.72 10.11 -26.69 -0.27 -1.99 16 17 C -0.18 -1.71 10.18 -26.69 -0.27 -1.99 16 18 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 19 H 0.06 0.56 7.90 -51.93 -0.41 0.15 16 20 H 0.07 0.83 5.61 -51.92 -0.29 0.54 16 21 H 0.34 4.27 8.81 -39.29 -0.35 3.92 16 22 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 23 H 0.03 0.47 6.35 -51.93 -0.33 0.15 16 24 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.09 0.83 8.05 -51.93 -0.42 0.41 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 280.62 15.07 4.23 4.23 Total: -1.00 -30.32 280.62 -8.12 -38.44 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -5.99 Total: -1.03 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: -1.41 Total: -22.42 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.07 Total: -36.23 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.32 -8.12 -38.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385326998.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.659 kcal (2) G-P(sol) polarization free energy of solvation -30.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds