Wall clock time and date at job start Mon Mar 30 2020 01:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46906 * 115.55103 * 2 1 4 4 C 1.46901 * 110.99793 * 34.41956 * 3 2 1 5 5 C 1.53000 * 109.46769 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.46886 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.46886 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.46912 * 179.97438 * 7 6 5 9 9 H 1.08009 * 120.00339 * 0.02562 * 8 7 6 10 10 C 1.37874 * 120.00310 * 179.97438 * 8 7 6 11 11 N 1.31519 * 119.99776 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00473 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47112 * 60.00220 * 12 10 8 14 14 H 1.48500 * 109.47454 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47261 * 300.00048 * 12 10 8 16 16 C 1.53004 * 117.49889 * 145.67244 * 2 1 3 17 17 C 1.52997 * 117.49780 * 214.33305 * 2 1 3 18 18 H 1.09000 * 109.47002 * 85.57981 * 1 2 3 19 19 H 1.08997 * 109.47271 * 205.58369 * 1 2 3 20 20 H 1.09010 * 109.47094 * 325.58302 * 1 2 3 21 21 H 1.00899 * 110.99995 * 270.46353 * 3 2 1 22 22 H 1.09002 * 109.47401 * 59.99808 * 4 3 2 23 23 H 1.09001 * 109.46874 * 299.99821 * 4 3 2 24 24 H 1.09001 * 109.47194 * 299.99524 * 5 4 3 25 25 H 1.08992 * 109.47399 * 59.99697 * 5 4 3 26 26 H 1.09001 * 109.47109 * 299.99380 * 6 5 4 27 27 H 1.09002 * 109.47508 * 59.99571 * 6 5 4 28 28 H 1.08992 * 109.47098 * 299.99158 * 7 6 5 29 29 H 1.09001 * 109.47583 * 60.00267 * 7 6 5 30 30 H 0.96998 * 120.00187 * 179.97438 * 11 10 8 31 31 H 1.09000 * 117.49736 * 215.00452 * 16 2 1 32 32 H 1.09003 * 117.49764 * 0.02562 * 16 2 1 33 33 H 1.09004 * 117.49950 * 359.97437 * 17 2 1 34 34 H 1.09003 * 117.50040 * 144.99809 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.1636 1.3254 0.0000 4 6 1.3699 2.2883 0.7752 5 6 2.0597 3.6538 0.7516 6 6 1.2334 4.6565 1.5595 7 6 1.9229 6.0221 1.5354 8 6 1.1087 7.0100 2.3306 9 1 0.1914 6.6951 2.8061 10 6 1.5352 8.3154 2.4522 11 7 2.6528 8.6985 1.8744 12 14 0.5264 9.5397 3.4385 13 1 0.4099 9.0684 4.8418 14 1 1.1954 10.8653 3.4150 15 1 -0.8284 9.6590 2.8423 16 6 2.2364 -1.1208 0.7653 17 6 2.2364 -1.1207 -0.7654 18 1 -0.3633 0.0792 -1.0246 19 1 -0.3633 -0.9269 0.4438 20 1 -0.3634 0.8478 0.5809 21 1 2.3127 1.6549 -0.9419 22 1 1.2835 1.9422 1.8052 23 1 0.3759 2.3761 0.3368 24 1 3.0539 3.5663 1.1897 25 1 2.1458 3.9996 -0.2784 26 1 0.2390 4.7442 1.1218 27 1 1.1477 4.3104 2.5896 28 1 2.9173 5.9349 1.9728 29 1 2.0081 6.3681 0.5052 30 1 2.9528 9.6171 1.9596 31 1 3.1713 -0.8747 1.2689 32 1 1.6112 -1.8584 1.2685 33 1 1.6111 -1.8582 -1.2687 34 1 3.1713 -0.8746 -1.2690 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385326998.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:17 Heat of formation + Delta-G solvation = -19.579878 kcal Electronic energy + Delta-G solvation = -12107.026808 eV Core-core repulsion = 10038.828365 eV Total energy + Delta-G solvation = -2068.198443 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.52495 -36.88564 -35.04885 -33.15055 -29.70407 -29.11818 -26.17583 -23.47993 -22.90201 -21.77408 -20.26674 -18.43859 -16.93215 -16.71107 -16.51157 -15.83085 -15.24515 -14.49717 -14.39712 -14.07837 -13.59890 -13.53784 -13.21903 -12.85816 -12.77080 -12.33786 -12.29183 -12.15096 -12.11367 -11.44451 -11.37120 -11.29561 -10.97585 -10.69020 -10.54839 -9.34291 -8.19569 -6.31411 1.39788 1.43395 1.51378 2.41305 2.86246 3.05612 3.13056 3.86836 4.07581 4.08667 4.11660 4.29868 4.44894 4.59639 4.66547 4.79948 4.82492 4.85379 4.91186 4.96980 5.06295 5.18546 5.26047 5.28062 5.33705 5.35699 5.54502 5.77269 5.86505 6.14725 6.25594 6.44311 6.85847 7.37976 8.92242 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.090141 B = 0.005015 C = 0.004874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 310.549245 B = 5581.454014 C = 5743.616404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.015 3.985 3 N -0.665 5.665 4 C 0.073 3.927 5 C -0.106 4.106 6 C -0.096 4.096 7 C 0.022 3.978 8 C -0.547 4.547 9 H 0.060 0.940 10 C -0.002 4.002 11 N -0.935 5.935 12 Si 0.967 3.033 13 H -0.266 1.266 14 H -0.282 1.282 15 H -0.266 1.266 16 C -0.166 4.166 17 C -0.161 4.161 18 H 0.064 0.936 19 H 0.075 0.925 20 H 0.060 0.940 21 H 0.344 0.656 22 H 0.066 0.934 23 H 0.042 0.958 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.050 0.950 28 H -0.012 1.012 29 H -0.010 1.010 30 H 0.264 0.736 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.993 -17.805 -4.121 18.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.076 4.076 3 N -0.295 5.295 4 C -0.056 4.056 5 C -0.144 4.144 6 C -0.134 4.134 7 C -0.015 4.015 8 C -0.585 4.585 9 H 0.078 0.922 10 C -0.200 4.200 11 N -0.575 5.575 12 Si 0.791 3.209 13 H -0.191 1.191 14 H -0.208 1.208 15 H -0.191 1.191 16 C -0.204 4.204 17 C -0.198 4.198 18 H 0.083 0.917 19 H 0.094 0.906 20 H 0.079 0.921 21 H 0.163 0.837 22 H 0.085 0.915 23 H 0.060 0.940 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.007 0.993 29 H 0.008 0.992 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.124 0.876 33 H 0.129 0.871 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.453 -17.801 -3.629 18.492 hybrid contribution -0.738 1.181 -0.160 1.402 sum -4.190 -16.620 -3.790 17.554 Atomic orbital electron populations 1.21833 0.92780 1.03195 1.02486 1.21668 0.92075 0.86476 1.07425 1.60338 1.48657 1.01534 1.18975 1.21884 0.94765 0.90654 0.98272 1.21480 0.99158 0.93876 0.99924 1.21392 0.98439 0.94584 0.99027 1.19026 0.94821 0.92723 0.94914 1.21721 1.08595 0.95669 1.32467 0.92153 1.26027 0.96298 1.00734 0.96919 1.70103 1.23513 1.18297 1.45613 0.85475 0.78760 0.77446 0.79214 1.19128 1.20753 1.19057 1.23231 1.02522 0.99982 0.94660 1.23186 1.02372 0.99690 0.94553 0.91723 0.90649 0.92070 0.83662 0.91543 0.93982 0.92885 0.92732 0.92969 0.93148 0.99333 0.99159 0.92757 0.89558 0.87630 0.87072 0.88611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.48 71.98 0.68 -2.01 16 2 C 0.02 0.32 2.80 3.53 0.01 0.33 16 3 N -0.66 -16.99 6.71 -470.16 -3.15 -20.14 16 4 C 0.07 2.08 4.70 86.30 0.41 2.49 16 5 C -0.11 -3.74 5.47 30.59 0.17 -3.57 16 6 C -0.10 -4.08 5.15 30.59 0.16 -3.92 16 7 C 0.02 1.22 4.97 29.85 0.15 1.37 16 8 C -0.55 -32.07 9.11 25.60 0.23 -31.84 16 9 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 10 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 11 N -0.93 -58.34 13.29 21.45 0.28 -58.05 16 12 Si 0.97 44.97 29.54 68.60 2.03 47.00 16 13 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 14 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 15 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 16 C -0.17 -3.21 10.11 30.62 0.31 -2.90 16 17 C -0.16 -2.76 10.18 30.62 0.31 -2.45 16 18 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 19 H 0.07 1.18 7.90 -2.39 -0.02 1.16 16 20 H 0.06 1.28 5.61 -2.38 -0.01 1.26 16 21 H 0.34 8.25 8.81 -89.69 -0.79 7.46 16 22 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 23 H 0.04 1.14 6.35 -2.39 -0.02 1.12 16 24 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 28 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 29 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 30 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 31 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.11 1.69 8.05 -2.39 -0.02 1.67 16 33 H 0.11 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -64.66 280.62 2.30 -62.36 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 0.26 Total: 11.01 kcal Atomic # 6 Polarization: -45.06 SS G_CDS: 2.89 Total: -42.17 kcal Atomic # 7 Polarization: -75.32 SS G_CDS: -2.87 Total: -78.19 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -64.66 2.30 -62.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385326998.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.778 kcal (2) G-P(sol) polarization free energy of solvation -64.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds