Wall clock time and date at job start Mon Mar 30 2020 01:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47223 * 2 1 4 4 C 1.52997 * 109.46912 * 180.77118 * 3 2 1 5 5 C 1.53000 * 112.85042 * 294.68816 * 4 3 2 6 6 N 1.46498 * 109.47466 * 301.54358 * 5 4 3 7 7 C 1.36930 * 120.00599 * 174.69017 * 6 5 4 8 8 H 1.08005 * 119.99416 * 359.97438 * 7 6 5 9 9 C 1.38812 * 120.00348 * 180.02562 * 7 6 5 10 10 N 1.31617 * 119.99920 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99852 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47139 * 60.00390 * 11 9 7 13 13 H 1.48505 * 109.46919 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47424 * 299.99920 * 11 9 7 15 15 C 1.53789 * 113.61326 * 163.49534 * 4 3 2 16 16 C 1.53950 * 87.01700 * 220.04448 * 15 4 3 17 17 C 1.53777 * 87.11639 * 25.36467 * 16 15 4 18 18 H 1.08999 * 109.47474 * 179.97438 * 1 2 3 19 19 H 1.08999 * 109.47152 * 300.00204 * 1 2 3 20 20 H 1.09000 * 109.47266 * 59.99770 * 1 2 3 21 21 H 1.08999 * 109.47152 * 239.99796 * 2 1 3 22 22 H 1.09000 * 109.47266 * 120.00229 * 2 1 3 23 23 H 1.08997 * 109.47055 * 300.76694 * 3 2 1 24 24 H 1.08994 * 109.47063 * 60.76727 * 3 2 1 25 25 H 1.09005 * 109.47021 * 61.54312 * 5 4 3 26 26 H 1.08998 * 109.47420 * 181.54231 * 5 4 3 27 27 H 0.97008 * 119.99817 * 354.69380 * 6 5 4 28 28 H 0.97004 * 120.00110 * 180.02562 * 10 9 7 29 29 H 1.09000 * 113.61367 * 334.56412 * 15 4 3 30 30 H 1.09002 * 113.60781 * 105.46547 * 15 4 3 31 31 H 1.09000 * 113.53723 * 270.80944 * 16 15 4 32 32 H 1.09001 * 113.73831 * 139.94299 * 16 15 4 33 33 H 1.08998 * 113.61462 * 220.09362 * 17 16 15 34 34 H 1.08998 * 113.69398 * 89.18998 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5698 1.4425 -0.0194 5 6 4.1801 0.8478 1.2513 6 7 3.7187 1.6070 2.4162 7 6 4.0480 1.1914 3.6787 8 1 4.6476 0.3036 3.8156 9 6 3.6103 1.9104 4.7824 10 7 2.8783 2.9914 4.6155 11 14 4.0590 1.3429 6.5047 12 1 5.5367 1.3255 6.6509 13 1 3.4745 2.2759 7.5013 14 1 3.5231 -0.0233 6.7311 15 6 4.1808 2.7953 -0.4215 16 6 5.2169 1.9955 -1.2319 17 6 4.1695 0.8727 -1.3158 18 1 -0.3634 -1.0276 -0.0005 19 1 -0.3633 0.5139 0.8900 20 1 -0.3634 0.5139 -0.8900 21 1 1.8933 -0.5139 -0.8900 22 1 1.8933 -0.5139 0.8900 23 1 1.6655 1.9603 -0.8830 24 1 1.6879 1.9523 0.8967 25 1 3.8711 -0.1928 1.3502 26 1 5.2672 0.8999 1.1911 27 1 3.1798 2.4041 2.2932 28 1 2.5728 3.4942 5.3868 29 1 3.5214 3.4063 -1.0380 30 1 4.6104 3.3462 0.4153 31 1 6.1030 1.7240 -0.6580 32 1 5.4578 2.4409 -2.1971 33 1 4.5900 -0.1263 -1.2001 34 1 3.5064 0.9557 -2.1769 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000391994839.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:29 Heat of formation + Delta-G solvation = 6.811990 kcal Electronic energy + Delta-G solvation = -13031.529469 eV Core-core repulsion = 10964.475463 eV Total energy + Delta-G solvation = -2067.054006 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.32856 -34.13401 -33.68818 -30.82148 -27.96363 -25.51480 -25.31436 -22.94163 -22.05640 -20.49260 -17.79564 -16.86334 -15.23588 -14.83384 -14.46568 -14.24375 -13.42262 -13.16544 -12.78606 -12.37721 -12.15578 -11.94017 -11.55371 -11.32501 -11.02165 -10.81155 -10.75381 -10.56805 -10.28087 -10.10799 -9.81877 -9.70315 -9.45239 -9.34893 -8.77300 -6.82083 -5.69904 -2.97018 3.47602 3.51768 3.52837 4.63415 4.97648 5.06552 5.13256 5.25613 5.48737 5.55682 5.64586 5.65498 5.86161 5.99984 6.05971 6.14364 6.19001 6.19870 6.24955 6.30318 6.38234 6.50912 6.57099 6.59052 6.73984 6.79028 6.96759 7.01678 7.09223 7.75266 8.49658 9.60662 10.21116 10.56456 11.53112 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.033579 B = 0.010250 C = 0.008764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.658354 B = 2730.928265 C = 3194.084653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.098 4.098 4 C -0.082 4.082 5 C 0.177 3.823 6 N -0.727 5.727 7 C -0.236 4.236 8 H 0.068 0.932 9 C -0.015 4.015 10 N -0.934 5.934 11 Si 0.905 3.095 12 H -0.287 1.287 13 H -0.292 1.292 14 H -0.287 1.287 15 C -0.132 4.132 16 C -0.141 4.141 17 C -0.130 4.130 18 H 0.046 0.954 19 H 0.055 0.945 20 H 0.046 0.954 21 H 0.052 0.948 22 H 0.068 0.932 23 H 0.049 0.951 24 H 0.073 0.927 25 H 0.023 0.977 26 H 0.014 0.986 27 H 0.384 0.616 28 H 0.254 0.746 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.438 -3.431 -11.526 12.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.136 4.136 4 C -0.083 4.083 5 C 0.049 3.951 6 N -0.371 5.371 7 C -0.367 4.367 8 H 0.086 0.914 9 C -0.210 4.210 10 N -0.583 5.583 11 Si 0.736 3.264 12 H -0.214 1.214 13 H -0.218 1.218 14 H -0.214 1.214 15 C -0.170 4.170 16 C -0.178 4.178 17 C -0.168 4.168 18 H 0.065 0.935 19 H 0.074 0.926 20 H 0.065 0.935 21 H 0.070 0.930 22 H 0.087 0.913 23 H 0.067 0.933 24 H 0.092 0.908 25 H 0.041 0.959 26 H 0.032 0.968 27 H 0.219 0.781 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.376 -3.521 -11.379 11.917 hybrid contribution 0.052 -0.006 0.984 0.985 sum -0.324 -3.527 -10.395 10.982 Atomic orbital electron populations 1.21760 0.96697 1.00807 1.01455 1.21453 0.94952 0.97522 1.01744 1.21460 0.94013 0.96531 1.01583 1.22021 0.94985 0.96318 0.94928 1.20406 0.95226 0.94258 0.85187 1.42303 1.63294 1.31078 1.00474 1.19190 1.26491 1.07457 0.83563 0.91425 1.24703 1.00849 0.97811 0.97686 1.69650 1.40832 1.18576 1.29258 0.86294 0.77825 0.77564 0.84675 1.21389 1.21754 1.21370 1.22965 0.97834 0.96424 0.99741 1.22822 0.97479 0.97868 0.99630 1.22927 0.98110 0.98127 0.97672 0.93460 0.92556 0.93502 0.92970 0.91335 0.93253 0.90830 0.95899 0.96806 0.78138 0.93586 0.90997 0.90829 0.90334 0.92406 0.91960 0.90719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.91 37.15 0.37 -1.73 16 2 C -0.12 -1.86 5.59 -26.73 -0.15 -2.01 16 3 C -0.10 -1.65 4.51 -26.73 -0.12 -1.77 16 4 C -0.08 -1.40 0.51 -153.69 -0.08 -1.48 16 5 C 0.18 3.70 5.23 -4.04 -0.02 3.68 16 6 N -0.73 -18.71 5.27 -59.91 -0.32 -19.03 16 7 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 8 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 9 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 10 N -0.93 -28.61 13.06 55.49 0.72 -27.88 16 11 Si 0.91 22.80 29.55 -169.99 -5.02 17.78 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 14 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 15 C -0.13 -2.16 7.23 -25.83 -0.19 -2.34 16 16 C -0.14 -2.00 7.74 -25.83 -0.20 -2.20 16 17 C -0.13 -1.84 6.53 -25.92 -0.17 -2.01 16 18 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 19 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 20 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 21 H 0.05 0.73 7.61 -51.93 -0.40 0.33 16 22 H 0.07 1.22 6.94 -51.93 -0.36 0.86 16 23 H 0.05 0.74 8.07 -51.93 -0.42 0.32 16 24 H 0.07 1.45 7.04 -51.93 -0.37 1.09 16 25 H 0.02 0.49 7.00 -51.93 -0.36 0.13 16 26 H 0.01 0.30 7.30 -51.93 -0.38 -0.08 16 27 H 0.38 10.40 6.76 -40.82 -0.28 10.12 16 28 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.07 1.07 8.05 -51.93 -0.42 0.65 16 30 H 0.07 1.37 8.10 -51.93 -0.42 0.95 16 31 H 0.08 1.16 7.60 -51.93 -0.39 0.76 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.86 8.10 -51.93 -0.42 0.44 16 34 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 LS Contribution 271.31 15.07 4.09 4.09 Total: -1.00 -29.66 271.31 -7.20 -36.86 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -5.87 Total: 5.43 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: -0.80 Total: -17.25 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: 0.41 Total: -46.91 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.66 -7.20 -36.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000391994839.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.672 kcal (2) G-P(sol) polarization free energy of solvation -29.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds