Wall clock time and date at job start Mon Mar 30 2020 01:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47223 * 2 1 4 4 C 1.52997 * 109.46912 * 180.77118 * 3 2 1 5 5 C 1.53000 * 112.85042 * 294.68816 * 4 3 2 6 6 N 1.46498 * 109.47466 * 301.54358 * 5 4 3 7 7 C 1.36930 * 120.00599 * 174.69017 * 6 5 4 8 8 H 1.08005 * 119.99416 * 359.97438 * 7 6 5 9 9 C 1.38812 * 120.00348 * 180.02562 * 7 6 5 10 10 N 1.31617 * 119.99920 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99852 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47139 * 60.00390 * 11 9 7 13 13 H 1.48505 * 109.46919 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47424 * 299.99920 * 11 9 7 15 15 C 1.53789 * 113.61326 * 163.49534 * 4 3 2 16 16 C 1.53950 * 87.01700 * 220.04448 * 15 4 3 17 17 C 1.53777 * 87.11639 * 25.36467 * 16 15 4 18 18 H 1.08999 * 109.47474 * 179.97438 * 1 2 3 19 19 H 1.08999 * 109.47152 * 300.00204 * 1 2 3 20 20 H 1.09000 * 109.47266 * 59.99770 * 1 2 3 21 21 H 1.08999 * 109.47152 * 239.99796 * 2 1 3 22 22 H 1.09000 * 109.47266 * 120.00229 * 2 1 3 23 23 H 1.08997 * 109.47055 * 300.76694 * 3 2 1 24 24 H 1.08994 * 109.47063 * 60.76727 * 3 2 1 25 25 H 1.09005 * 109.47021 * 61.54312 * 5 4 3 26 26 H 1.08998 * 109.47420 * 181.54231 * 5 4 3 27 27 H 0.97008 * 119.99817 * 354.69380 * 6 5 4 28 28 H 0.97004 * 120.00110 * 180.02562 * 10 9 7 29 29 H 1.09000 * 113.61367 * 334.56412 * 15 4 3 30 30 H 1.09002 * 113.60781 * 105.46547 * 15 4 3 31 31 H 1.09000 * 113.53723 * 270.80944 * 16 15 4 32 32 H 1.09001 * 113.73831 * 139.94299 * 16 15 4 33 33 H 1.08998 * 113.61462 * 220.09362 * 17 16 15 34 34 H 1.08998 * 113.69398 * 89.18998 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5698 1.4425 -0.0194 5 6 4.1801 0.8478 1.2513 6 7 3.7187 1.6070 2.4162 7 6 4.0480 1.1914 3.6787 8 1 4.6476 0.3036 3.8156 9 6 3.6103 1.9104 4.7824 10 7 2.8783 2.9914 4.6155 11 14 4.0590 1.3429 6.5047 12 1 5.5367 1.3255 6.6509 13 1 3.4745 2.2759 7.5013 14 1 3.5231 -0.0233 6.7311 15 6 4.1808 2.7953 -0.4215 16 6 5.2169 1.9955 -1.2319 17 6 4.1695 0.8727 -1.3158 18 1 -0.3634 -1.0276 -0.0005 19 1 -0.3633 0.5139 0.8900 20 1 -0.3634 0.5139 -0.8900 21 1 1.8933 -0.5139 -0.8900 22 1 1.8933 -0.5139 0.8900 23 1 1.6655 1.9603 -0.8830 24 1 1.6879 1.9523 0.8967 25 1 3.8711 -0.1928 1.3502 26 1 5.2672 0.8999 1.1911 27 1 3.1798 2.4041 2.2932 28 1 2.5728 3.4942 5.3868 29 1 3.5214 3.4063 -1.0380 30 1 4.6104 3.3462 0.4153 31 1 6.1030 1.7240 -0.6580 32 1 5.4578 2.4409 -2.1971 33 1 4.5900 -0.1263 -1.2001 34 1 3.5064 0.9557 -2.1769 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000391994839.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:29 Heat of formation + Delta-G solvation = -10.432051 kcal Electronic energy + Delta-G solvation = -13032.277226 eV Core-core repulsion = 10964.475463 eV Total energy + Delta-G solvation = -2067.801763 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.66591 -36.04701 -35.02735 -32.87380 -29.38406 -27.29621 -26.56887 -24.71704 -23.51266 -21.75561 -19.55217 -18.63651 -16.74783 -16.33570 -16.23820 -15.54258 -15.24898 -14.78044 -14.36018 -13.86101 -13.64424 -13.17689 -12.94409 -12.88257 -12.70311 -12.57584 -12.23500 -12.13063 -11.89665 -11.74820 -11.48979 -11.12523 -10.98861 -10.80657 -10.60157 -8.95384 -7.93846 -5.21330 1.45122 1.48501 1.54581 2.55847 3.38653 3.63751 3.80342 3.86230 4.04811 4.19720 4.31017 4.35396 4.50432 4.58670 4.83039 4.86052 4.91526 4.94984 4.99967 5.08862 5.10408 5.13617 5.19994 5.27393 5.39058 5.41281 5.48278 5.57007 5.67409 5.72430 6.28406 7.34704 8.13171 8.37495 9.29675 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.033579 B = 0.010250 C = 0.008764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.658354 B = 2730.928265 C = 3194.084653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C -0.094 4.094 4 C -0.090 4.090 5 C 0.177 3.823 6 N -0.737 5.737 7 C -0.245 4.245 8 H 0.071 0.929 9 C -0.075 4.075 10 N -0.969 5.969 11 Si 0.972 3.028 12 H -0.279 1.279 13 H -0.294 1.294 14 H -0.278 1.278 15 C -0.136 4.136 16 C -0.132 4.132 17 C -0.113 4.113 18 H 0.061 0.939 19 H 0.034 0.966 20 H 0.066 0.934 21 H 0.076 0.924 22 H 0.037 0.963 23 H 0.074 0.926 24 H 0.032 0.968 25 H 0.020 0.980 26 H 0.010 0.990 27 H 0.374 0.626 28 H 0.251 0.749 29 H 0.090 0.910 30 H 0.038 0.962 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.226 -4.374 -13.177 13.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C -0.131 4.131 4 C -0.090 4.090 5 C 0.050 3.950 6 N -0.379 5.379 7 C -0.377 4.377 8 H 0.089 0.911 9 C -0.267 4.267 10 N -0.620 5.620 11 Si 0.801 3.199 12 H -0.205 1.205 13 H -0.220 1.220 14 H -0.205 1.205 15 C -0.174 4.174 16 C -0.170 4.170 17 C -0.151 4.151 18 H 0.080 0.920 19 H 0.053 0.947 20 H 0.085 0.915 21 H 0.095 0.905 22 H 0.056 0.944 23 H 0.092 0.908 24 H 0.051 0.949 25 H 0.038 0.962 26 H 0.028 0.972 27 H 0.207 0.793 28 H 0.059 0.941 29 H 0.108 0.892 30 H 0.057 0.943 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.142 -4.495 -13.055 13.808 hybrid contribution -0.001 0.277 1.457 1.483 sum -0.143 -4.218 -11.598 12.342 Atomic orbital electron populations 1.21738 0.95516 1.01794 1.01410 1.21415 0.96028 0.96501 1.01353 1.21412 0.93816 0.97201 1.00688 1.21989 0.95092 0.97373 0.94592 1.20513 0.95000 0.93767 0.85700 1.42471 1.63136 1.31142 1.01199 1.19596 1.25822 1.07305 0.84969 0.91064 1.25532 1.01385 0.98198 1.01610 1.69818 1.42317 1.19881 1.29968 0.85231 0.77767 0.77177 0.79716 1.20474 1.22030 1.20450 1.23010 0.98971 0.96064 0.99335 1.22778 0.96595 0.97300 1.00280 1.22889 0.97779 0.98249 0.96189 0.91993 0.94656 0.91477 0.90504 0.94419 0.90768 0.94885 0.96230 0.97207 0.79321 0.94071 0.89151 0.94284 0.91368 0.89658 0.91325 0.88088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.90 9.91 71.98 0.71 -3.18 16 2 C -0.12 -3.44 5.59 30.59 0.17 -3.27 16 3 C -0.09 -3.05 4.51 30.60 0.14 -2.92 16 4 C -0.09 -2.98 0.51 -51.65 -0.03 -3.01 16 5 C 0.18 7.47 5.23 86.38 0.45 7.92 16 6 N -0.74 -39.05 5.27 -343.45 -1.81 -40.86 16 7 C -0.25 -14.22 9.99 84.03 0.84 -13.38 16 8 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 9 C -0.08 -4.44 5.50 84.86 0.47 -3.98 16 10 N -0.97 -60.88 13.06 21.65 0.28 -60.59 16 11 Si 0.97 47.40 29.55 68.60 2.03 49.43 16 12 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 13 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 14 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 15 C -0.14 -4.30 7.23 31.18 0.23 -4.08 16 16 C -0.13 -3.41 7.74 31.18 0.24 -3.17 16 17 C -0.11 -2.83 6.53 31.12 0.20 -2.62 16 18 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 19 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 20 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 21 H 0.08 1.91 7.61 -2.39 -0.02 1.89 16 22 H 0.04 1.34 6.94 -2.39 -0.02 1.32 16 23 H 0.07 2.04 8.07 -2.39 -0.02 2.02 16 24 H 0.03 1.33 7.04 -2.39 -0.02 1.32 16 25 H 0.02 0.85 7.00 -2.38 -0.02 0.83 16 26 H 0.01 0.43 7.30 -2.39 -0.02 0.42 16 27 H 0.37 21.13 6.76 -92.70 -0.63 20.51 16 28 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 29 H 0.09 2.50 8.05 -2.39 -0.02 2.48 16 30 H 0.04 1.48 8.10 -2.39 -0.02 1.46 16 31 H 0.07 1.90 7.60 -2.39 -0.02 1.88 16 32 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.07 1.66 8.10 -2.39 -0.02 1.64 16 34 H 0.10 2.06 8.10 -2.39 -0.02 2.04 16 Total: -1.00 -64.52 271.31 4.35 -60.17 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: 0.42 Total: 23.53 kcal Atomic # 6 Polarization: -35.10 SS G_CDS: 3.42 Total: -31.68 kcal Atomic # 7 Polarization: -99.93 SS G_CDS: -1.53 Total: -101.45 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Total: -64.52 4.35 -60.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000391994839.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.738 kcal (2) G-P(sol) polarization free energy of solvation -64.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds