Wall clock time and date at job start Mon Mar 30 2020 02:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47029 * 2 1 4 4 C 1.53003 * 109.46977 * 120.00292 * 2 1 3 5 5 C 1.53001 * 109.46836 * 175.00147 * 4 2 1 6 6 H 1.08998 * 115.56106 * 29.31215 * 5 4 2 7 7 C 1.53074 * 117.51108 * 243.60305 * 5 4 2 8 8 C 1.52993 * 59.98474 * 252.52348 * 7 5 4 9 9 H 1.08994 * 117.50172 * 252.49489 * 8 7 5 10 10 C 1.53012 * 117.49624 * 107.50164 * 8 7 5 11 11 N 1.46500 * 109.46866 * 116.25029 * 10 8 7 12 12 C 1.36935 * 119.99795 * 179.97438 * 11 10 8 13 13 H 1.08006 * 119.99956 * 0.02562 * 12 11 10 14 14 C 1.38809 * 120.00104 * 180.02562 * 12 11 10 15 15 N 1.31615 * 120.00002 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00116 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47261 * 239.99934 * 16 14 12 19 19 H 1.48500 * 109.47454 * 119.99927 * 16 14 12 20 20 H 1.08994 * 109.47296 * 299.99675 * 1 2 3 21 21 H 1.09004 * 109.47173 * 59.99815 * 1 2 3 22 22 H 1.09002 * 109.47045 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47144 * 240.00226 * 2 1 3 24 24 H 1.09003 * 109.46973 * 60.00121 * 3 2 1 25 25 H 1.09003 * 109.47017 * 179.97438 * 3 2 1 26 26 H 1.08995 * 109.47037 * 300.00202 * 3 2 1 27 27 H 1.09000 * 109.47192 * 55.00181 * 4 2 1 28 28 H 1.09003 * 109.47077 * 294.99889 * 4 2 1 29 29 H 1.09003 * 117.49123 * 145.03292 * 7 5 4 30 30 H 1.08998 * 117.53424 * 359.97438 * 7 5 4 31 31 H 1.08994 * 109.46761 * 356.25097 * 10 8 7 32 32 H 1.08995 * 109.46757 * 236.25452 * 10 8 7 33 33 H 0.96997 * 120.00022 * 0.02562 * 11 10 8 34 34 H 0.97004 * 120.00335 * 0.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.8311 1.1879 6 1 4.0721 -0.0355 0.6421 7 6 4.1704 -2.2351 1.1157 8 6 4.2803 -1.4197 2.4055 9 1 5.2579 -1.0113 2.6610 10 6 3.4160 -1.8536 3.5913 11 7 4.2799 -2.2776 4.6959 12 6 3.7259 -2.7105 5.8710 13 1 2.6521 -2.7398 5.9833 14 6 4.5444 -3.1118 6.9178 15 7 5.8530 -3.0757 6.7811 16 14 3.7887 -3.7031 8.5205 17 1 2.3081 -3.6477 8.4198 18 1 4.2417 -2.8301 9.6331 19 1 4.2156 -5.1010 8.7830 20 1 -0.3633 0.5137 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 1.6767 1.9563 0.8900 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6054 -1.7199 1.2951 28 1 1.7516 -0.1584 2.1370 29 1 5.0757 -2.3627 0.5222 30 1 3.4828 -3.0808 1.1122 31 1 2.7769 -2.6837 3.2906 32 1 2.7967 -1.0170 3.9148 33 1 5.2442 -2.2509 4.5951 34 1 6.2455 -2.7683 5.9490 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395832817.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:24 Heat of formation + Delta-G solvation = -10.918228 kcal Electronic energy + Delta-G solvation = -12402.609666 eV Core-core repulsion = 10334.786821 eV Total energy + Delta-G solvation = -2067.822846 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.69652 -36.93704 -35.82078 -32.72892 -28.45924 -27.98266 -27.42711 -24.85670 -22.58415 -21.40182 -20.30375 -19.33564 -17.15923 -16.46630 -15.90899 -15.62678 -15.11797 -14.87909 -14.81155 -14.23955 -13.61939 -13.29163 -12.98610 -12.73222 -12.66704 -12.55215 -12.24036 -11.87258 -11.79589 -11.69665 -11.43255 -11.34911 -11.16280 -10.72308 -10.61191 -9.14328 -8.45486 -5.38727 1.56676 1.69052 1.81233 2.67407 2.81472 3.36117 3.62949 3.65600 3.92566 4.01339 4.13280 4.21307 4.32595 4.46039 4.48354 4.78390 4.83248 4.86178 4.88173 4.91291 4.96285 5.03778 5.08789 5.14402 5.25727 5.28865 5.39297 5.52001 5.54316 5.54577 6.44825 7.05459 7.95766 8.07769 9.07042 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.054638 B = 0.006425 C = 0.006031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.341736 B = 4356.698534 C = 4641.615747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.148 4.148 4 C -0.085 4.085 5 C -0.123 4.123 6 H 0.121 0.879 7 C -0.168 4.168 8 C -0.177 4.177 9 H 0.091 0.909 10 C 0.194 3.806 11 N -0.758 5.758 12 C -0.340 4.340 13 H 0.065 0.935 14 C -0.104 4.104 15 N -0.974 5.974 16 Si 1.136 2.864 17 H -0.272 1.272 18 H -0.288 1.288 19 H -0.288 1.288 20 H 0.050 0.950 21 H 0.066 0.934 22 H 0.053 0.947 23 H 0.076 0.924 24 H 0.048 0.952 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.015 0.985 32 H 0.016 0.984 33 H 0.360 0.640 34 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.744 6.396 -14.879 18.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 C -0.205 4.205 4 C -0.122 4.122 5 C -0.141 4.141 6 H 0.139 0.861 7 C -0.205 4.205 8 C -0.196 4.196 9 H 0.109 0.891 10 C 0.068 3.932 11 N -0.402 5.402 12 C -0.472 4.472 13 H 0.083 0.917 14 C -0.295 4.295 15 N -0.622 5.622 16 Si 0.960 3.040 17 H -0.197 1.197 18 H -0.214 1.214 19 H -0.214 1.214 20 H 0.069 0.931 21 H 0.085 0.915 22 H 0.072 0.928 23 H 0.094 0.906 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.123 0.877 30 H 0.108 0.892 31 H 0.033 0.967 32 H 0.034 0.966 33 H 0.192 0.808 34 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -8.702 5.829 -13.365 16.980 hybrid contribution 0.298 0.501 -1.360 1.480 sum -8.403 6.329 -14.725 18.097 Atomic orbital electron populations 1.21844 0.94770 1.01810 1.02056 1.21052 0.95950 0.96411 0.97335 1.21895 1.01199 0.95589 1.01857 1.21232 0.92113 1.00430 0.98452 1.22553 0.95760 0.96716 0.99106 0.86094 1.23209 1.03344 0.94704 0.99195 1.22439 1.00599 1.06613 0.89935 0.89065 1.20153 0.91868 0.95128 0.86028 1.42634 1.04702 1.79806 1.13091 1.20480 0.93316 1.39673 0.93689 0.91704 1.27348 0.95231 1.00923 1.05970 1.70927 1.11057 1.52363 1.27844 0.82526 0.74260 0.76015 0.71210 1.19677 1.21426 1.21422 0.93131 0.91474 0.92832 0.90590 0.93310 0.92521 0.91628 0.92495 0.92701 0.87663 0.89236 0.96678 0.96585 0.80762 0.94595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.19 71.98 0.66 -1.90 16 2 C -0.09 -1.70 2.92 -10.79 -0.03 -1.73 16 3 C -0.15 -2.62 9.01 71.98 0.65 -1.97 16 4 C -0.08 -2.10 4.05 30.60 0.12 -1.98 16 5 C -0.12 -3.25 5.53 -10.77 -0.06 -3.31 16 6 H 0.12 2.76 6.38 -2.39 -0.02 2.74 16 7 C -0.17 -4.79 9.83 30.62 0.30 -4.48 16 8 C -0.18 -6.22 5.84 -10.79 -0.06 -6.28 16 9 H 0.09 3.35 8.04 -2.39 -0.02 3.33 16 10 C 0.19 8.55 5.62 86.38 0.49 9.04 16 11 N -0.76 -41.46 5.60 -343.44 -1.92 -43.38 16 12 C -0.34 -20.33 9.99 84.03 0.84 -19.49 16 13 H 0.06 3.79 7.83 -2.91 -0.02 3.76 16 14 C -0.10 -6.27 5.50 84.86 0.47 -5.80 16 15 N -0.97 -63.04 13.70 21.65 0.30 -62.74 16 16 Si 1.14 53.51 29.92 68.60 2.05 55.56 16 17 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 18 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 19 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 20 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 21 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 22 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.06 1.00 6.41 -2.39 -0.02 0.98 16 26 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.06 1.48 7.88 -2.39 -0.02 1.46 16 28 H 0.05 1.51 7.60 -2.39 -0.02 1.49 16 29 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 30 H 0.09 2.61 7.92 -2.39 -0.02 2.59 16 31 H 0.02 0.68 7.87 -2.39 -0.02 0.66 16 32 H 0.02 0.73 7.60 -2.39 -0.02 0.71 16 33 H 0.36 20.27 6.43 -92.71 -0.60 19.68 16 34 H 0.24 15.78 6.78 -92.70 -0.63 15.15 16 Total: -1.00 -67.74 275.74 4.39 -63.35 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: 0.60 Total: 25.13 kcal Atomic # 6 Polarization: -41.28 SS G_CDS: 3.37 Total: -37.91 kcal Atomic # 7 Polarization: -104.50 SS G_CDS: -1.63 Total: -106.12 kcal Atomic # 14 Polarization: 53.51 SS G_CDS: 2.05 Total: 55.56 kcal Total: -67.74 4.39 -63.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395832817.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.428 kcal (2) G-P(sol) polarization free energy of solvation -67.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds