Wall clock time and date at job start Mon Mar 30 2020 02:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47180 * 2 1 4 4 C 1.52994 * 109.47293 * 187.28751 * 3 2 1 5 5 H 1.08995 * 110.59969 * 54.99028 * 4 3 2 6 6 C 1.55102 * 110.83059 * 178.01769 * 4 3 2 7 7 C 1.54593 * 102.84901 * 155.85018 * 6 4 3 8 8 C 1.53998 * 105.22407 * 338.14802 * 7 6 4 9 9 N 1.47898 * 107.05711 * 358.72571 * 8 7 6 10 10 C 1.46905 * 110.99957 * 145.84166 * 9 8 7 11 11 C 1.50696 * 109.47232 * 282.73864 * 10 9 8 12 12 H 1.08006 * 119.99980 * 5.19883 * 11 10 9 13 13 C 1.37877 * 120.00300 * 185.19343 * 11 10 9 14 14 N 1.31512 * 119.99717 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00383 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47166 * 89.99929 * 15 13 11 17 17 H 1.48500 * 109.47217 * 210.00252 * 15 13 11 18 18 H 1.48496 * 109.47274 * 330.00214 * 15 13 11 19 19 H 1.08999 * 109.47142 * 179.97438 * 1 2 3 20 20 H 1.08997 * 109.47249 * 300.00004 * 1 2 3 21 21 H 1.09000 * 109.46740 * 60.00362 * 1 2 3 22 22 H 1.08997 * 109.47249 * 239.99996 * 2 1 3 23 23 H 1.08997 * 109.46673 * 120.00160 * 2 1 3 24 24 H 1.09005 * 109.46895 * 67.28432 * 3 2 1 25 25 H 1.09005 * 109.47149 * 307.29259 * 3 2 1 26 26 H 1.09004 * 110.71122 * 37.53703 * 6 4 3 27 27 H 1.09005 * 110.81271 * 274.20496 * 6 4 3 28 28 H 1.09000 * 110.30828 * 219.18691 * 7 6 4 29 29 H 1.08994 * 110.31423 * 97.11164 * 7 6 4 30 30 H 1.09002 * 109.91551 * 118.08272 * 8 7 6 31 31 H 1.08997 * 109.91675 * 239.17713 * 8 7 6 32 32 H 1.09006 * 109.46879 * 42.73696 * 10 9 8 33 33 H 1.08998 * 109.47135 * 162.73595 * 10 9 8 34 34 H 0.97000 * 120.00441 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5590 1.4464 -0.1830 5 1 3.8383 0.8979 -1.0825 6 6 4.1042 2.8974 -0.2374 7 6 5.5758 2.7285 0.2051 8 6 5.6132 1.4026 0.9875 9 7 4.2323 0.8734 1.0107 10 6 4.2302 -0.5948 0.9621 11 6 4.5019 -1.0511 -0.4482 12 1 4.7432 -0.3276 -1.2129 13 6 4.4426 -2.3923 -0.7624 14 7 4.1484 -3.2733 0.1687 15 14 4.7786 -2.9579 -2.5106 16 1 6.2281 -3.2392 -2.6699 17 1 4.0013 -4.1920 -2.7897 18 1 4.3738 -1.8922 -3.4622 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 1.7870 1.9173 0.9480 25 1 1.5741 1.9926 -0.8176 26 1 3.5634 3.5388 0.4585 27 1 4.0495 3.2939 -1.2513 28 1 5.8747 3.5560 0.8486 29 1 6.2288 2.6723 -0.6658 30 1 6.2739 0.6946 0.4871 31 1 5.9626 1.5812 2.0044 32 1 5.0048 -0.9813 1.6246 33 1 3.2578 -0.9676 1.2837 34 1 4.1062 -4.2169 -0.0523 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396860915.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:48 Heat of formation + Delta-G solvation = -7.927390 kcal Electronic energy + Delta-G solvation = -13422.659552 eV Core-core repulsion = 11354.966399 eV Total energy + Delta-G solvation = -2067.693153 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.48540 -33.80873 -33.02674 -30.77224 -29.04336 -26.17228 -24.69341 -22.77314 -20.49318 -19.92813 -19.12210 -16.33549 -15.52965 -14.69921 -14.32673 -13.98123 -13.03482 -12.98234 -12.42498 -12.18457 -11.94258 -11.80806 -11.42026 -11.00074 -10.84138 -10.75071 -10.57286 -10.43875 -10.11442 -10.05051 -9.66088 -9.56641 -9.42443 -9.15811 -8.33460 -7.10887 -6.00745 -4.07620 3.27067 3.34633 3.36799 4.41324 5.12209 5.30456 5.35840 5.43389 5.70002 5.80242 5.88243 5.98175 6.14957 6.20884 6.25648 6.38388 6.41951 6.50357 6.57537 6.65408 6.69260 6.82844 6.92454 7.03650 7.10785 7.29597 7.40084 7.69608 7.99593 8.10980 8.31241 8.36819 9.02546 9.57169 11.04530 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.026172 B = 0.015052 C = 0.011640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.591449 B = 1859.775035 C = 2404.905315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C -0.090 4.090 4 C 0.059 3.941 5 H 0.081 0.919 6 C -0.123 4.123 7 C -0.128 4.128 8 C 0.040 3.960 9 N -0.518 5.518 10 C 0.169 3.831 11 C -0.542 4.542 12 H 0.061 0.939 13 C 0.067 3.933 14 N -0.889 5.889 15 Si 0.883 3.117 16 H -0.282 1.282 17 H -0.286 1.286 18 H -0.274 1.274 19 H 0.046 0.954 20 H 0.043 0.957 21 H 0.041 0.959 22 H 0.069 0.931 23 H 0.083 0.917 24 H 0.053 0.947 25 H 0.046 0.954 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.018 0.982 33 H 0.051 0.949 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.008 8.412 -1.078 8.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C -0.128 4.128 4 C -0.049 4.049 5 H 0.098 0.902 6 C -0.161 4.161 7 C -0.166 4.166 8 C -0.089 4.089 9 N -0.243 5.243 10 C 0.044 3.956 11 C -0.581 4.581 12 H 0.079 0.921 13 C -0.136 4.136 14 N -0.528 5.528 15 Si 0.711 3.289 16 H -0.208 1.208 17 H -0.212 1.212 18 H -0.199 1.199 19 H 0.065 0.935 20 H 0.062 0.938 21 H 0.060 0.940 22 H 0.088 0.912 23 H 0.101 0.899 24 H 0.072 0.928 25 H 0.065 0.935 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.036 0.964 33 H 0.068 0.932 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.307 8.347 -0.548 8.677 hybrid contribution 0.716 -0.788 -1.743 2.043 sum -1.591 7.559 -2.292 8.057 Atomic orbital electron populations 1.21816 0.98043 1.00584 1.00174 1.21753 0.93059 0.96830 1.04831 1.21341 0.94513 0.96998 0.99974 1.22952 0.93941 0.92410 0.95620 0.90154 1.22568 0.95685 0.98037 0.99800 1.22348 0.96944 0.97950 0.99385 1.22671 0.92947 0.94648 0.98643 1.65077 1.11082 1.10798 1.37309 1.20118 0.98194 0.81642 0.95673 1.21717 1.47967 0.92241 0.96142 0.92067 1.24920 0.95098 0.96849 0.96701 1.69940 1.48403 1.01789 1.32627 0.86743 0.78277 0.78379 0.85547 1.20771 1.21165 1.19928 0.93488 0.93774 0.94007 0.91191 0.89887 0.92819 0.93502 0.91931 0.92499 0.92447 0.92507 0.93351 0.92389 0.96352 0.93168 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.91 37.16 0.37 -2.09 16 2 C -0.13 -2.54 4.71 -26.73 -0.13 -2.67 16 3 C -0.09 -1.66 4.97 -26.74 -0.13 -1.79 16 4 C 0.06 1.18 2.21 -65.70 -0.15 1.03 16 5 H 0.08 1.82 5.03 -51.93 -0.26 1.56 16 6 C -0.12 -2.05 6.52 -24.78 -0.16 -2.21 16 7 C -0.13 -2.12 6.92 -25.37 -0.18 -2.29 16 8 C 0.04 0.78 6.44 -2.75 -0.02 0.77 16 9 N -0.52 -11.33 5.23 -223.95 -1.17 -12.50 16 10 C 0.17 4.32 4.46 -4.98 -0.02 4.29 16 11 C -0.54 -14.44 6.42 -34.44 -0.22 -14.66 16 12 H 0.06 1.63 5.64 -52.48 -0.30 1.34 16 13 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 14 N -0.89 -25.70 13.29 55.43 0.74 -24.97 16 15 Si 0.88 21.20 29.54 -169.99 -5.02 16.18 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 19 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 20 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.07 1.56 7.47 -51.93 -0.39 1.17 16 23 H 0.08 1.88 5.07 -51.93 -0.26 1.61 16 24 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.99 8.06 -51.93 -0.42 0.57 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.05 1.05 7.35 -51.93 -0.38 0.66 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.02 0.51 7.98 -51.93 -0.41 0.09 16 33 H 0.05 1.36 5.16 -51.93 -0.27 1.09 16 34 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 260.72 15.07 3.93 3.93 Total: -1.00 -27.62 260.72 -7.89 -35.51 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -5.63 Total: -0.26 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: -0.73 Total: -17.88 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: -0.43 Total: -37.47 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -27.62 -7.89 -35.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396860915.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.578 kcal (2) G-P(sol) polarization free energy of solvation -27.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds