Wall clock time and date at job start Mon Mar 30 2020 02:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47452 * 2 1 4 4 C 1.52998 * 109.47311 * 185.04364 * 3 2 1 5 5 H 1.08997 * 110.37001 * 52.22250 * 4 3 2 6 6 C 1.54379 * 110.50826 * 289.80471 * 4 3 2 7 7 C 1.54263 * 105.05797 * 217.31826 * 6 4 3 8 8 C 1.54383 * 105.06112 * 0.02562 * 7 6 4 9 9 N 1.48553 * 104.59465 * 23.85233 * 8 7 6 10 10 C 1.46902 * 111.00196 * 200.96224 * 9 8 7 11 11 C 1.50699 * 109.47027 * 280.03806 * 10 9 8 12 12 H 1.08005 * 119.99802 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00262 * 179.72167 * 11 10 9 14 14 N 1.31512 * 119.99547 * 0.27638 * 13 11 10 15 15 Si 1.86799 * 120.00191 * 180.27328 * 13 11 10 16 16 H 1.48508 * 109.47026 * 90.00190 * 15 13 11 17 17 H 1.48503 * 109.47198 * 210.00160 * 15 13 11 18 18 H 1.48498 * 109.47381 * 330.00444 * 15 13 11 19 19 H 1.09004 * 109.46629 * 299.99918 * 1 2 3 20 20 H 1.09000 * 109.46928 * 60.00161 * 1 2 3 21 21 H 1.08998 * 109.47332 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.46843 * 239.99476 * 2 1 3 23 23 H 1.09000 * 109.46928 * 119.99839 * 2 1 3 24 24 H 1.08998 * 109.46890 * 65.03567 * 3 2 1 25 25 H 1.09008 * 109.46705 * 305.04132 * 3 2 1 26 26 H 1.08999 * 110.32596 * 336.21204 * 6 4 3 27 27 H 1.09000 * 110.32874 * 98.32395 * 6 4 3 28 28 H 1.08996 * 110.32448 * 118.89849 * 7 6 4 29 29 H 1.09004 * 110.32470 * 241.10259 * 7 6 4 30 30 H 1.08998 * 110.40681 * 265.07341 * 8 7 6 31 31 H 1.08997 * 110.40909 * 142.63448 * 8 7 6 32 32 H 1.09001 * 109.47124 * 160.03731 * 10 9 8 33 33 H 1.08998 * 109.46770 * 40.03591 * 10 9 8 34 34 H 0.97003 * 119.99777 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5648 1.4443 -0.1268 5 1 3.8752 0.8427 -0.9811 6 6 4.2160 0.9153 1.1692 7 6 5.4850 1.7717 1.3585 8 6 5.4935 2.7464 0.1613 9 7 4.0716 2.8347 -0.2596 10 6 3.9614 3.3046 -1.6471 11 6 4.1188 4.8029 -1.6840 12 1 4.2838 5.3513 -0.7682 13 6 4.0575 5.4732 -2.8873 14 7 3.8561 4.8055 -4.0023 15 14 4.2602 7.3295 -2.9339 16 1 5.6967 7.6665 -3.1031 17 1 3.4843 7.8839 -4.0723 18 1 3.7611 7.9141 -1.6633 19 1 -0.3633 0.5139 0.8901 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 1.8933 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 1.7523 1.9295 0.9316 25 1 1.6049 1.9817 -0.8415 26 1 3.5401 1.0482 2.0140 27 1 4.4802 -0.1363 1.0583 28 1 5.4321 2.3248 2.2961 29 1 6.3738 1.1408 1.3398 30 1 6.1056 2.3488 -0.6482 31 1 5.8599 3.7252 0.4706 32 1 2.9845 3.0320 -2.0465 33 1 4.7426 2.8422 -2.2503 34 1 3.8126 5.2770 -4.8488 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396860916.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:49 Heat of formation + Delta-G solvation = -21.281693 kcal Electronic energy + Delta-G solvation = -12881.533458 eV Core-core repulsion = 10813.261219 eV Total energy + Delta-G solvation = -2068.272239 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.44651 -34.36627 -32.99768 -30.85061 -29.26157 -26.29175 -24.91994 -22.32740 -21.37750 -19.90122 -19.29643 -16.26697 -15.35640 -14.89312 -14.55514 -14.11823 -13.72854 -12.93193 -12.74514 -12.54267 -11.99727 -11.93927 -11.64856 -11.14520 -10.95593 -10.79395 -10.63832 -10.53365 -10.34149 -10.23950 -9.97981 -9.96471 -9.69431 -9.15102 -8.37527 -7.33214 -5.98077 -3.98824 3.34452 3.40256 3.45391 4.46294 4.85826 5.18035 5.29227 5.35769 5.38034 5.40445 5.51848 5.64551 5.81946 5.99684 6.06957 6.07479 6.15942 6.20999 6.26874 6.31876 6.38250 6.57224 6.63569 6.67927 6.80552 6.84399 7.23143 7.36110 7.86190 8.08407 8.23861 8.58384 9.09401 9.65088 11.12782 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.034206 B = 0.009595 C = 0.008022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.368681 B = 2917.501538 C = 3489.721659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.101 4.101 4 C 0.059 3.941 5 H 0.040 0.960 6 C -0.116 4.116 7 C -0.126 4.126 8 C 0.044 3.956 9 N -0.504 5.504 10 C 0.182 3.818 11 C -0.502 4.502 12 H 0.062 0.938 13 C 0.053 3.947 14 N -0.901 5.901 15 Si 0.897 3.103 16 H -0.282 1.282 17 H -0.287 1.287 18 H -0.273 1.273 19 H 0.052 0.948 20 H 0.054 0.946 21 H 0.047 0.953 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.033 0.967 31 H 0.075 0.925 32 H 0.029 0.971 33 H -0.007 1.007 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.417 -8.264 8.207 11.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.139 4.139 4 C -0.050 4.050 5 H 0.058 0.942 6 C -0.155 4.155 7 C -0.164 4.164 8 C -0.085 4.085 9 N -0.228 5.228 10 C 0.057 3.943 11 C -0.540 4.540 12 H 0.080 0.920 13 C -0.148 4.148 14 N -0.541 5.541 15 Si 0.725 3.275 16 H -0.208 1.208 17 H -0.213 1.213 18 H -0.198 1.198 19 H 0.071 0.929 20 H 0.073 0.927 21 H 0.066 0.934 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.052 0.948 31 H 0.093 0.907 32 H 0.047 0.953 33 H 0.011 0.989 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.747 -7.840 8.324 11.568 hybrid contribution 0.608 0.469 -0.821 1.124 sum -1.139 -7.371 7.503 10.580 Atomic orbital electron populations 1.21762 0.96268 1.00855 1.01888 1.21525 0.95457 0.97652 1.01395 1.21492 0.94422 0.95332 1.02687 1.22608 0.95042 0.91599 0.95784 0.94247 1.22331 0.96957 0.98099 0.98063 1.22335 0.97144 0.97704 0.99262 1.22926 0.91402 0.98791 0.95342 1.65424 1.13337 1.17380 1.26693 1.19885 0.96487 0.95859 0.82103 1.21158 1.48120 0.91753 0.93001 0.91961 1.25002 0.95624 0.98579 0.95588 1.69964 1.50484 1.35624 0.98004 0.86505 0.77961 0.85395 0.77600 1.20790 1.21300 1.19787 0.92916 0.92675 0.93352 0.92452 0.92472 0.91789 0.91458 0.91631 0.92527 0.91785 0.92461 0.94839 0.90686 0.95267 0.98931 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 37.16 0.37 -1.47 16 2 C -0.12 -1.67 5.75 -26.73 -0.15 -1.83 16 3 C -0.10 -1.73 4.86 -26.73 -0.13 -1.86 16 4 C 0.06 1.09 2.24 -66.06 -0.15 0.95 16 5 H 0.04 0.77 8.00 -51.93 -0.42 0.36 16 6 C -0.12 -1.79 5.96 -25.35 -0.15 -1.94 16 7 C -0.13 -1.99 7.00 -25.35 -0.18 -2.16 16 8 C 0.04 0.88 6.27 -2.18 -0.01 0.86 16 9 N -0.50 -11.33 4.97 -223.55 -1.11 -12.44 16 10 C 0.18 4.90 4.58 -4.98 -0.02 4.88 16 11 C -0.50 -14.55 9.14 -34.44 -0.31 -14.87 16 12 H 0.06 1.80 7.81 -52.48 -0.41 1.39 16 13 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 14 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 15 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 19 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 20 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 21 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.06 0.71 7.77 -51.93 -0.40 0.31 16 24 H 0.06 1.08 7.96 -51.93 -0.41 0.67 16 25 H 0.07 1.31 7.17 -51.92 -0.37 0.93 16 26 H 0.06 0.95 7.74 -51.93 -0.40 0.55 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.03 0.69 7.68 -51.93 -0.40 0.29 16 31 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 32 H 0.03 0.83 7.02 -51.93 -0.36 0.47 16 33 H -0.01 -0.20 7.65 -51.93 -0.40 -0.60 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 272.52 15.07 4.11 4.11 Total: -1.00 -30.08 272.52 -8.22 -38.31 By element: Atomic # 1 Polarization: 1.59 SS G_CDS: -6.09 Total: -4.50 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: -0.84 Total: -16.00 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: -0.38 Total: -39.00 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.08 -8.22 -38.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396860916.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.024 kcal (2) G-P(sol) polarization free energy of solvation -30.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds