Wall clock time and date at job start Mon Mar 30 2020 01:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47554 * 2 1 4 4 C 1.53001 * 115.55990 * 325.69196 * 3 2 1 5 5 C 1.52998 * 117.49998 * 111.37877 * 3 2 1 6 6 C 1.52996 * 59.99971 * 107.49216 * 5 3 2 7 7 H 1.08995 * 117.52102 * 252.51721 * 6 5 3 8 8 N 1.46906 * 117.49685 * 107.49042 * 6 5 3 9 9 C 1.46901 * 110.99793 * 136.37972 * 8 6 5 10 10 C 1.53000 * 109.46769 * 180.02562 * 9 8 6 11 11 C 1.50706 * 109.46735 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99928 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99611 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00327 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99743 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46828 * 90.00241 * 15 13 11 17 17 H 1.48494 * 109.47178 * 209.99936 * 15 13 11 18 18 H 1.48500 * 109.47075 * 330.00183 * 15 13 11 19 19 H 1.08999 * 109.47188 * 180.02562 * 1 2 3 20 20 H 1.09006 * 109.46789 * 299.99549 * 1 2 3 21 21 H 1.08998 * 109.47300 * 59.99724 * 1 2 3 22 22 H 1.09005 * 109.47151 * 240.00052 * 2 1 3 23 23 H 1.08998 * 109.47300 * 120.00276 * 2 1 3 24 24 H 1.08998 * 109.47231 * 274.30876 * 4 3 2 25 25 H 1.09000 * 109.47030 * 34.31261 * 4 3 2 26 26 H 1.08997 * 109.46971 * 154.30786 * 4 3 2 27 27 H 1.09001 * 117.49733 * 0.02562 * 5 3 2 28 28 H 1.08999 * 117.49862 * 214.98502 * 5 3 2 29 29 H 1.00899 * 110.99995 * 12.42370 * 8 6 5 30 30 H 1.09002 * 109.47401 * 59.99808 * 9 8 6 31 31 H 1.09001 * 109.46874 * 299.99821 * 9 8 6 32 32 H 1.09001 * 109.47194 * 299.99524 * 10 9 8 33 33 H 1.08992 * 109.47399 * 59.99697 * 10 9 8 34 34 H 0.97000 * 120.00354 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.1853 2.4449 -0.7780 5 6 2.7420 1.9435 1.2637 6 6 3.5551 1.6561 0.0000 7 1 4.1884 0.7690 -0.0005 8 7 4.0776 2.8080 -0.7470 9 6 5.4686 2.5801 -1.1607 10 6 5.9770 3.7988 -1.9335 11 6 7.4039 3.5646 -2.3584 12 1 7.8986 2.6394 -2.1025 13 6 8.0775 4.5317 -3.0740 14 7 7.4749 5.6582 -3.3861 15 14 9.8464 4.2419 -3.6001 16 1 9.8655 3.5931 -4.9358 17 1 10.5611 5.5416 -3.6708 18 1 10.5186 3.3604 -2.6119 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 1.4777 2.4339 -1.8280 25 1 0.1340 2.1708 -0.6906 26 1 1.3352 3.4443 -0.3695 27 1 2.8408 1.2454 2.0950 28 1 2.5948 2.9874 1.5409 29 1 3.9953 3.6565 -0.2073 30 1 5.5180 1.6980 -1.7991 31 1 6.0893 2.4251 -0.2782 32 1 5.3564 3.9542 -2.8160 33 1 5.9277 4.6805 -1.2948 34 1 7.9487 6.3384 -3.8898 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397435781.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:16 Heat of formation + Delta-G solvation = 0.718912 kcal Electronic energy + Delta-G solvation = -12318.961653 eV Core-core repulsion = 10251.643431 eV Total energy + Delta-G solvation = -2067.318221 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.71366 -34.83141 -32.83706 -31.41862 -28.47047 -27.73348 -24.16546 -23.61264 -21.09946 -20.53970 -18.38121 -16.32169 -15.41351 -14.97726 -14.58526 -14.35641 -14.07099 -13.03539 -12.90728 -12.43594 -12.18276 -12.00796 -11.88972 -11.60623 -11.19385 -11.03899 -10.91419 -10.71414 -10.60288 -10.32511 -9.81462 -9.64444 -9.19216 -9.08802 -8.33914 -7.59533 -5.98752 -4.01357 3.33103 3.39022 3.42266 3.97198 4.41540 4.57146 4.96625 4.99990 5.19599 5.24932 5.34564 5.37256 5.57631 5.68634 5.88536 5.90546 5.99040 6.06054 6.10172 6.19994 6.29805 6.36767 6.37325 6.45638 6.66251 6.98623 7.53077 7.74364 7.84106 7.96864 8.09620 8.44559 9.05826 9.62384 11.12750 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.076912 B = 0.005726 C = 0.005619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.963751 B = 4889.147538 C = 4981.822091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.085 4.085 3 C -0.121 4.121 4 C -0.106 4.106 5 C -0.205 4.205 6 C 0.038 3.962 7 H 0.102 0.898 8 N -0.657 5.657 9 C 0.067 3.933 10 C 0.025 3.975 11 C -0.521 4.521 12 H 0.054 0.946 13 C 0.058 3.942 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 H 0.049 0.951 20 H 0.052 0.948 21 H 0.060 0.940 22 H 0.064 0.936 23 H 0.058 0.942 24 H 0.064 0.936 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.337 0.663 30 H 0.059 0.941 31 H 0.017 0.983 32 H 0.025 0.975 33 H 0.013 0.987 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.157 -8.390 7.356 15.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.123 4.123 3 C -0.123 4.123 4 C -0.163 4.163 5 C -0.244 4.244 6 C -0.074 4.074 7 H 0.120 0.880 8 N -0.286 5.286 9 C -0.061 4.061 10 C -0.013 4.013 11 C -0.560 4.560 12 H 0.072 0.928 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.721 3.279 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.199 1.199 19 H 0.068 0.932 20 H 0.072 0.928 21 H 0.079 0.921 22 H 0.083 0.917 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.105 0.895 28 H 0.110 0.890 29 H 0.156 0.844 30 H 0.077 0.923 31 H 0.035 0.965 32 H 0.044 0.956 33 H 0.032 0.968 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.359 -8.407 6.646 15.616 hybrid contribution 1.503 0.048 0.592 1.616 sum -9.856 -8.359 7.238 14.812 Atomic orbital electron populations 1.21817 0.95884 1.00959 1.02005 1.21026 0.95670 0.94005 1.01565 1.21769 0.94942 0.95845 0.99697 1.21238 0.97659 0.97015 1.00433 1.23703 1.06936 1.01723 0.92035 1.22592 0.92684 0.96512 0.95573 0.88048 1.60276 1.22639 1.02830 1.42840 1.22209 0.84557 1.01599 0.97700 1.19075 0.95409 0.91410 0.95395 1.21173 0.97708 1.02331 1.34813 0.92750 1.25001 0.98182 0.95147 0.96009 1.69971 1.37025 1.06859 1.39430 0.86583 0.84838 0.77486 0.79020 1.20614 1.21217 1.19924 0.93238 0.92846 0.92084 0.91732 0.92322 0.91681 0.92729 0.92912 0.89473 0.89042 0.84368 0.92266 0.96510 0.95637 0.96819 0.92990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 8.92 37.16 0.33 -1.11 16 2 C -0.09 -0.96 6.12 -26.73 -0.16 -1.12 16 3 C -0.12 -1.60 2.47 -154.51 -0.38 -1.98 16 4 C -0.11 -1.41 8.95 37.16 0.33 -1.08 16 5 C -0.21 -2.67 9.52 -26.73 -0.25 -2.92 16 6 C 0.04 0.59 6.01 -67.71 -0.41 0.18 16 7 H 0.10 1.56 7.90 -51.93 -0.41 1.15 16 8 N -0.66 -12.12 6.15 -106.73 -0.66 -12.77 16 9 C 0.07 1.45 5.48 -3.82 -0.02 1.43 16 10 C 0.02 0.65 5.23 -27.88 -0.15 0.51 16 11 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 12 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -27.21 13.29 55.43 0.74 -26.47 16 15 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 19 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 20 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 21 H 0.06 0.59 6.45 -51.93 -0.33 0.26 16 22 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.06 0.62 7.90 -51.93 -0.41 0.21 16 24 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.05 0.62 5.59 -51.93 -0.29 0.33 16 26 H 0.05 0.71 7.90 -51.93 -0.41 0.30 16 27 H 0.09 1.02 8.05 -51.93 -0.42 0.60 16 28 H 0.09 1.18 7.99 -51.93 -0.42 0.77 16 29 H 0.34 6.06 8.52 -39.29 -0.33 5.72 16 30 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 279.03 15.07 4.20 4.20 Total: -1.00 -29.72 279.03 -7.80 -37.52 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -5.95 Total: 0.53 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: -1.12 Total: -19.83 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: 0.08 Total: -39.24 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.72 -7.80 -37.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397435781.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.237 kcal (2) G-P(sol) polarization free energy of solvation -29.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds