Wall clock time and date at job start Mon Mar 30 2020 01:57:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52998 * 109.47554 * 2 1
4 4 C 1.53001 * 115.55990 * 325.69196 * 3 2 1
5 5 C 1.52998 * 117.49998 * 111.37877 * 3 2 1
6 6 C 1.52996 * 59.99971 * 107.49216 * 5 3 2
7 7 H 1.08995 * 117.52102 * 252.51721 * 6 5 3
8 8 N 1.46906 * 117.49685 * 107.49042 * 6 5 3
9 9 C 1.46901 * 110.99793 * 136.37972 * 8 6 5
10 10 C 1.53000 * 109.46769 * 180.02562 * 9 8 6
11 11 C 1.50706 * 109.46735 * 180.02562 * 10 9 8
12 12 H 1.07996 * 119.99928 * 359.97438 * 11 10 9
13 13 C 1.37880 * 119.99611 * 179.97438 * 11 10 9
14 14 N 1.31511 * 120.00327 * 359.97438 * 13 11 10
15 15 Si 1.86803 * 119.99743 * 179.97438 * 13 11 10
16 16 H 1.48506 * 109.46828 * 90.00241 * 15 13 11
17 17 H 1.48494 * 109.47178 * 209.99936 * 15 13 11
18 18 H 1.48500 * 109.47075 * 330.00183 * 15 13 11
19 19 H 1.08999 * 109.47188 * 180.02562 * 1 2 3
20 20 H 1.09006 * 109.46789 * 299.99549 * 1 2 3
21 21 H 1.08998 * 109.47300 * 59.99724 * 1 2 3
22 22 H 1.09005 * 109.47151 * 240.00052 * 2 1 3
23 23 H 1.08998 * 109.47300 * 120.00276 * 2 1 3
24 24 H 1.08998 * 109.47231 * 274.30876 * 4 3 2
25 25 H 1.09000 * 109.47030 * 34.31261 * 4 3 2
26 26 H 1.08997 * 109.46971 * 154.30786 * 4 3 2
27 27 H 1.09001 * 117.49733 * 0.02562 * 5 3 2
28 28 H 1.08999 * 117.49862 * 214.98502 * 5 3 2
29 29 H 1.00899 * 110.99995 * 12.42370 * 8 6 5
30 30 H 1.09002 * 109.47401 * 59.99808 * 9 8 6
31 31 H 1.09001 * 109.46874 * 299.99821 * 9 8 6
32 32 H 1.09001 * 109.47194 * 299.99524 * 10 9 8
33 33 H 1.08992 * 109.47399 * 59.99697 * 10 9 8
34 34 H 0.97000 * 120.00354 * 180.02562 * 14 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 6 1.1853 2.4449 -0.7780
5 6 2.7420 1.9435 1.2637
6 6 3.5551 1.6561 0.0000
7 1 4.1884 0.7690 -0.0005
8 7 4.0776 2.8080 -0.7470
9 6 5.4686 2.5801 -1.1607
10 6 5.9770 3.7988 -1.9335
11 6 7.4039 3.5646 -2.3584
12 1 7.8986 2.6394 -2.1025
13 6 8.0775 4.5317 -3.0740
14 7 7.4749 5.6582 -3.3861
15 14 9.8464 4.2419 -3.6001
16 1 9.8655 3.5931 -4.9358
17 1 10.5611 5.5416 -3.6708
18 1 10.5186 3.3604 -2.6119
19 1 -0.3633 -1.0277 0.0005
20 1 -0.3633 0.5138 0.8901
21 1 -0.3634 0.5139 -0.8899
22 1 1.8933 -0.5138 -0.8900
23 1 1.8934 -0.5139 0.8899
24 1 1.4777 2.4339 -1.8280
25 1 0.1340 2.1708 -0.6906
26 1 1.3352 3.4443 -0.3695
27 1 2.8408 1.2454 2.0950
28 1 2.5948 2.9874 1.5409
29 1 3.9953 3.6565 -0.2073
30 1 5.5180 1.6980 -1.7991
31 1 6.0893 2.4251 -0.2782
32 1 5.3564 3.9542 -2.8160
33 1 5.9277 4.6805 -1.2948
34 1 7.9487 6.3384 -3.8898
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000397435781.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:57:16
Heat of formation + Delta-G solvation = 0.718912 kcal
Electronic energy + Delta-G solvation = -12318.961653 eV
Core-core repulsion = 10251.643431 eV
Total energy + Delta-G solvation = -2067.318221 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 197.148 amu
Computer time = 0.16 seconds
Orbital eigenvalues (eV)
-38.71366 -34.83141 -32.83706 -31.41862 -28.47047 -27.73348 -24.16546 -23.61264
-21.09946 -20.53970 -18.38121 -16.32169 -15.41351 -14.97726 -14.58526 -14.35641
-14.07099 -13.03539 -12.90728 -12.43594 -12.18276 -12.00796 -11.88972 -11.60623
-11.19385 -11.03899 -10.91419 -10.71414 -10.60288 -10.32511 -9.81462 -9.64444
-9.19216 -9.08802 -8.33914 -7.59533 -5.98752 -4.01357 3.33103 3.39022
3.42266 3.97198 4.41540 4.57146 4.96625 4.99990 5.19599 5.24932
5.34564 5.37256 5.57631 5.68634 5.88536 5.90546 5.99040 6.06054
6.10172 6.19994 6.29805 6.36767 6.37325 6.45638 6.66251 6.98623
7.53077 7.74364 7.84106 7.96864 8.09620 8.44559 9.05826 9.62384
11.12750
Molecular weight = 197.15amu
Principal moments of inertia in cm(-1)
A = 0.076912 B = 0.005726 C = 0.005619
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 363.963751 B = 4889.147538 C = 4981.822091
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.085 4.085
3 C -0.121 4.121
4 C -0.106 4.106
5 C -0.205 4.205
6 C 0.038 3.962
7 H 0.102 0.898
8 N -0.657 5.657
9 C 0.067 3.933
10 C 0.025 3.975
11 C -0.521 4.521
12 H 0.054 0.946
13 C 0.058 3.942
14 N -0.894 5.894
15 Si 0.893 3.107
16 H -0.280 1.280
17 H -0.286 1.286
18 H -0.274 1.274
19 H 0.049 0.951
20 H 0.052 0.948
21 H 0.060 0.940
22 H 0.064 0.936
23 H 0.058 0.942
24 H 0.064 0.936
25 H 0.054 0.946
26 H 0.052 0.948
27 H 0.087 0.913
28 H 0.091 0.909
29 H 0.337 0.663
30 H 0.059 0.941
31 H 0.017 0.983
32 H 0.025 0.975
33 H 0.013 0.987
34 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.157 -8.390 7.356 15.780
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.123 4.123
3 C -0.123 4.123
4 C -0.163 4.163
5 C -0.244 4.244
6 C -0.074 4.074
7 H 0.120 0.880
8 N -0.286 5.286
9 C -0.061 4.061
10 C -0.013 4.013
11 C -0.560 4.560
12 H 0.072 0.928
13 C -0.143 4.143
14 N -0.533 5.533
15 Si 0.721 3.279
16 H -0.206 1.206
17 H -0.212 1.212
18 H -0.199 1.199
19 H 0.068 0.932
20 H 0.072 0.928
21 H 0.079 0.921
22 H 0.083 0.917
23 H 0.077 0.923
24 H 0.083 0.917
25 H 0.073 0.927
26 H 0.071 0.929
27 H 0.105 0.895
28 H 0.110 0.890
29 H 0.156 0.844
30 H 0.077 0.923
31 H 0.035 0.965
32 H 0.044 0.956
33 H 0.032 0.968
34 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges -11.359 -8.407 6.646 15.616
hybrid contribution 1.503 0.048 0.592 1.616
sum -9.856 -8.359 7.238 14.812
Atomic orbital electron populations
1.21817 0.95884 1.00959 1.02005 1.21026 0.95670 0.94005 1.01565
1.21769 0.94942 0.95845 0.99697 1.21238 0.97659 0.97015 1.00433
1.23703 1.06936 1.01723 0.92035 1.22592 0.92684 0.96512 0.95573
0.88048 1.60276 1.22639 1.02830 1.42840 1.22209 0.84557 1.01599
0.97700 1.19075 0.95409 0.91410 0.95395 1.21173 0.97708 1.02331
1.34813 0.92750 1.25001 0.98182 0.95147 0.96009 1.69971 1.37025
1.06859 1.39430 0.86583 0.84838 0.77486 0.79020 1.20614 1.21217
1.19924 0.93238 0.92846 0.92084 0.91732 0.92322 0.91681 0.92729
0.92912 0.89473 0.89042 0.84368 0.92266 0.96510 0.95637 0.96819
0.92990
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.44 8.92 37.16 0.33 -1.11 16
2 C -0.09 -0.96 6.12 -26.73 -0.16 -1.12 16
3 C -0.12 -1.60 2.47 -154.51 -0.38 -1.98 16
4 C -0.11 -1.41 8.95 37.16 0.33 -1.08 16
5 C -0.21 -2.67 9.52 -26.73 -0.25 -2.92 16
6 C 0.04 0.59 6.01 -67.71 -0.41 0.18 16
7 H 0.10 1.56 7.90 -51.93 -0.41 1.15 16
8 N -0.66 -12.12 6.15 -106.73 -0.66 -12.77 16
9 C 0.07 1.45 5.48 -3.82 -0.02 1.43 16
10 C 0.02 0.65 5.23 -27.88 -0.15 0.51 16
11 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16
12 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16
13 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16
14 N -0.89 -27.21 13.29 55.43 0.74 -26.47 16
15 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16
16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16
17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16
18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16
19 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16
20 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16
21 H 0.06 0.59 6.45 -51.93 -0.33 0.26 16
22 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16
23 H 0.06 0.62 7.90 -51.93 -0.41 0.21 16
24 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16
25 H 0.05 0.62 5.59 -51.93 -0.29 0.33 16
26 H 0.05 0.71 7.90 -51.93 -0.41 0.30 16
27 H 0.09 1.02 8.05 -51.93 -0.42 0.60 16
28 H 0.09 1.18 7.99 -51.93 -0.42 0.77 16
29 H 0.34 6.06 8.52 -39.29 -0.33 5.72 16
30 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16
31 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16
32 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16
33 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16
34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16
LS Contribution 279.03 15.07 4.20 4.20
Total: -1.00 -29.72 279.03 -7.80 -37.52
By element:
Atomic # 1 Polarization: 6.47 SS G_CDS: -5.95 Total: 0.53 kcal
Atomic # 6 Polarization: -18.71 SS G_CDS: -1.12 Total: -19.83 kcal
Atomic # 7 Polarization: -39.32 SS G_CDS: 0.08 Total: -39.24 kcal
Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal
Total LS contribution 4.20 Total: 4.20 kcal
Total: -29.72 -7.80 -37.52 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000397435781.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 38.237 kcal
(2) G-P(sol) polarization free energy of solvation -29.716 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.521 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.802 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.519 kcal
(6) G-S(sol) free energy of system = (1) + (5) 0.719 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.16 seconds