Wall clock time and date at job start Mon Mar 30 2020 01:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47554 * 2 1 4 4 C 1.53001 * 115.55990 * 325.69196 * 3 2 1 5 5 C 1.52998 * 117.49998 * 111.37877 * 3 2 1 6 6 C 1.52996 * 59.99971 * 107.49216 * 5 3 2 7 7 H 1.08995 * 117.52102 * 252.51721 * 6 5 3 8 8 N 1.46906 * 117.49685 * 107.49042 * 6 5 3 9 9 C 1.46901 * 110.99793 * 136.37972 * 8 6 5 10 10 C 1.53000 * 109.46769 * 180.02562 * 9 8 6 11 11 C 1.50706 * 109.46735 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99928 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99611 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00327 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99743 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46828 * 90.00241 * 15 13 11 17 17 H 1.48494 * 109.47178 * 209.99936 * 15 13 11 18 18 H 1.48500 * 109.47075 * 330.00183 * 15 13 11 19 19 H 1.08999 * 109.47188 * 180.02562 * 1 2 3 20 20 H 1.09006 * 109.46789 * 299.99549 * 1 2 3 21 21 H 1.08998 * 109.47300 * 59.99724 * 1 2 3 22 22 H 1.09005 * 109.47151 * 240.00052 * 2 1 3 23 23 H 1.08998 * 109.47300 * 120.00276 * 2 1 3 24 24 H 1.08998 * 109.47231 * 274.30876 * 4 3 2 25 25 H 1.09000 * 109.47030 * 34.31261 * 4 3 2 26 26 H 1.08997 * 109.46971 * 154.30786 * 4 3 2 27 27 H 1.09001 * 117.49733 * 0.02562 * 5 3 2 28 28 H 1.08999 * 117.49862 * 214.98502 * 5 3 2 29 29 H 1.00899 * 110.99995 * 12.42370 * 8 6 5 30 30 H 1.09002 * 109.47401 * 59.99808 * 9 8 6 31 31 H 1.09001 * 109.46874 * 299.99821 * 9 8 6 32 32 H 1.09001 * 109.47194 * 299.99524 * 10 9 8 33 33 H 1.08992 * 109.47399 * 59.99697 * 10 9 8 34 34 H 0.97000 * 120.00354 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.1853 2.4449 -0.7780 5 6 2.7420 1.9435 1.2637 6 6 3.5551 1.6561 0.0000 7 1 4.1884 0.7690 -0.0005 8 7 4.0776 2.8080 -0.7470 9 6 5.4686 2.5801 -1.1607 10 6 5.9770 3.7988 -1.9335 11 6 7.4039 3.5646 -2.3584 12 1 7.8986 2.6394 -2.1025 13 6 8.0775 4.5317 -3.0740 14 7 7.4749 5.6582 -3.3861 15 14 9.8464 4.2419 -3.6001 16 1 9.8655 3.5931 -4.9358 17 1 10.5611 5.5416 -3.6708 18 1 10.5186 3.3604 -2.6119 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 1.4777 2.4339 -1.8280 25 1 0.1340 2.1708 -0.6906 26 1 1.3352 3.4443 -0.3695 27 1 2.8408 1.2454 2.0950 28 1 2.5948 2.9874 1.5409 29 1 3.9953 3.6565 -0.2073 30 1 5.5180 1.6980 -1.7991 31 1 6.0893 2.4251 -0.2782 32 1 5.3564 3.9542 -2.8160 33 1 5.9277 4.6805 -1.2948 34 1 7.9487 6.3384 -3.8898 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397435781.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:16 Heat of formation + Delta-G solvation = -17.385913 kcal Electronic energy + Delta-G solvation = -12319.746737 eV Core-core repulsion = 10251.643431 eV Total energy + Delta-G solvation = -2068.103305 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.86421 -36.50860 -34.70510 -32.72021 -30.25716 -28.86019 -26.09485 -24.59187 -22.47818 -22.30560 -19.46266 -18.50245 -16.71994 -16.49930 -16.24063 -15.68107 -15.27713 -14.68669 -14.25321 -13.97045 -13.48526 -13.32533 -13.08118 -12.94227 -12.84882 -12.58428 -12.46620 -12.12725 -11.95853 -11.62849 -11.49938 -11.32317 -11.17045 -10.57241 -10.43588 -9.01112 -8.21308 -6.33239 1.40136 1.42038 1.53031 2.39933 2.83792 3.12145 3.25440 3.91004 3.96799 4.06558 4.21720 4.44861 4.51145 4.58306 4.65298 4.79627 4.86721 4.92446 5.02958 5.05466 5.06737 5.16954 5.24802 5.37867 5.43108 5.44237 5.63334 5.65377 5.78251 6.14329 6.29357 6.50770 6.83708 7.36229 8.91009 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.076912 B = 0.005726 C = 0.005619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.963751 B = 4889.147538 C = 4981.822091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.114 4.114 4 C -0.106 4.106 5 C -0.186 4.186 6 C 0.008 3.992 7 H 0.102 0.898 8 N -0.663 5.663 9 C 0.087 3.913 10 C 0.032 3.968 11 C -0.546 4.546 12 H 0.060 0.940 13 C 0.001 3.999 14 N -0.932 5.932 15 Si 0.969 3.031 16 H -0.272 1.272 17 H -0.281 1.281 18 H -0.263 1.263 19 H 0.063 0.937 20 H 0.058 0.942 21 H 0.058 0.942 22 H 0.058 0.942 23 H 0.069 0.931 24 H 0.044 0.956 25 H 0.076 0.924 26 H 0.045 0.955 27 H 0.107 0.893 28 H 0.092 0.908 29 H 0.337 0.663 30 H 0.056 0.944 31 H 0.020 0.980 32 H -0.007 1.007 33 H -0.009 1.009 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.212 -9.705 8.188 16.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.115 4.115 4 C -0.163 4.163 5 C -0.225 4.225 6 C -0.102 4.102 7 H 0.120 0.880 8 N -0.292 5.292 9 C -0.041 4.041 10 C -0.006 4.006 11 C -0.584 4.584 12 H 0.079 0.921 13 C -0.197 4.197 14 N -0.572 5.572 15 Si 0.793 3.207 16 H -0.197 1.197 17 H -0.206 1.206 18 H -0.187 1.187 19 H 0.082 0.918 20 H 0.077 0.923 21 H 0.077 0.923 22 H 0.077 0.923 23 H 0.088 0.912 24 H 0.063 0.937 25 H 0.095 0.905 26 H 0.064 0.936 27 H 0.125 0.875 28 H 0.111 0.889 29 H 0.156 0.844 30 H 0.075 0.925 31 H 0.038 0.962 32 H 0.012 0.988 33 H 0.010 0.990 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.433 -9.740 7.492 16.784 hybrid contribution 1.451 0.467 0.349 1.564 sum -9.982 -9.273 7.841 15.719 Atomic orbital electron populations 1.21793 0.94447 1.02020 1.02128 1.21064 0.96900 0.92410 1.01871 1.21895 0.93002 0.97156 0.99435 1.21240 0.99109 0.96897 0.99073 1.23737 1.04575 1.02362 0.91813 1.22662 0.94183 0.95441 0.97954 0.88039 1.60197 1.20508 1.04168 1.44299 1.21797 0.86435 0.98830 0.97067 1.18922 0.94621 0.92785 0.94255 1.21604 0.98832 1.02765 1.35230 0.92131 1.25989 1.03215 0.94689 0.95809 1.70108 1.39154 1.07877 1.40078 0.85396 0.78700 0.77721 0.78903 1.19716 1.20605 1.18679 0.91797 0.92293 0.92344 0.92315 0.91193 0.93724 0.90486 0.93560 0.87465 0.88919 0.84374 0.92504 0.96193 0.98825 0.99025 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 8.92 71.98 0.64 -1.79 16 2 C -0.08 -1.72 6.12 30.59 0.19 -1.53 16 3 C -0.11 -2.82 2.47 -52.18 -0.13 -2.95 16 4 C -0.11 -2.71 8.95 71.98 0.64 -2.06 16 5 C -0.19 -4.46 9.52 30.59 0.29 -4.17 16 6 C 0.01 0.25 6.01 44.91 0.27 0.52 16 7 H 0.10 3.03 7.90 -2.39 -0.02 3.01 16 8 N -0.66 -24.69 6.15 -491.57 -3.02 -27.71 16 9 C 0.09 3.83 5.48 86.30 0.47 4.30 16 10 C 0.03 1.74 5.23 29.85 0.16 1.89 16 11 C -0.55 -31.82 9.11 25.60 0.23 -31.58 16 12 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 13 C 0.00 0.06 5.46 84.66 0.46 0.52 16 14 N -0.93 -57.74 13.29 21.45 0.28 -57.45 16 15 Si 0.97 44.73 29.54 68.60 2.03 46.76 16 16 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 17 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 18 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 19 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 20 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 21 H 0.06 0.99 6.45 -2.39 -0.02 0.98 16 22 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 23 H 0.07 1.27 7.90 -2.39 -0.02 1.25 16 24 H 0.04 1.31 8.14 -2.39 -0.02 1.30 16 25 H 0.08 1.60 5.59 -2.39 -0.01 1.59 16 26 H 0.05 1.22 7.90 -2.39 -0.02 1.20 16 27 H 0.11 2.16 8.05 -2.39 -0.02 2.15 16 28 H 0.09 2.22 7.99 -2.39 -0.02 2.20 16 29 H 0.34 12.31 8.52 -89.69 -0.76 11.55 16 30 H 0.06 2.49 8.14 -2.39 -0.02 2.48 16 31 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 32 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 33 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 34 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -63.75 279.03 2.80 -60.95 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: 0.28 Total: 14.31 kcal Atomic # 6 Polarization: -40.08 SS G_CDS: 3.23 Total: -36.85 kcal Atomic # 7 Polarization: -82.43 SS G_CDS: -2.74 Total: -85.17 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -63.75 2.80 -60.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397435781.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.562 kcal (2) G-P(sol) polarization free energy of solvation -63.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds