Wall clock time and date at job start Mon Mar 30 2020 01:57:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52998 * 109.47554 * 2 1
4 4 C 1.53001 * 115.55990 * 325.69196 * 3 2 1
5 5 C 1.52998 * 117.49998 * 111.37877 * 3 2 1
6 6 C 1.52996 * 59.99971 * 107.49216 * 5 3 2
7 7 H 1.08995 * 117.52102 * 252.51721 * 6 5 3
8 8 N 1.46906 * 117.49685 * 107.49042 * 6 5 3
9 9 C 1.46901 * 110.99793 * 136.37972 * 8 6 5
10 10 C 1.53000 * 109.46769 * 180.02562 * 9 8 6
11 11 C 1.50706 * 109.46735 * 180.02562 * 10 9 8
12 12 H 1.07996 * 119.99928 * 359.97438 * 11 10 9
13 13 C 1.37880 * 119.99611 * 179.97438 * 11 10 9
14 14 N 1.31511 * 120.00327 * 359.97438 * 13 11 10
15 15 Si 1.86803 * 119.99743 * 179.97438 * 13 11 10
16 16 H 1.48506 * 109.46828 * 90.00241 * 15 13 11
17 17 H 1.48494 * 109.47178 * 209.99936 * 15 13 11
18 18 H 1.48500 * 109.47075 * 330.00183 * 15 13 11
19 19 H 1.08999 * 109.47188 * 180.02562 * 1 2 3
20 20 H 1.09006 * 109.46789 * 299.99549 * 1 2 3
21 21 H 1.08998 * 109.47300 * 59.99724 * 1 2 3
22 22 H 1.09005 * 109.47151 * 240.00052 * 2 1 3
23 23 H 1.08998 * 109.47300 * 120.00276 * 2 1 3
24 24 H 1.08998 * 109.47231 * 274.30876 * 4 3 2
25 25 H 1.09000 * 109.47030 * 34.31261 * 4 3 2
26 26 H 1.08997 * 109.46971 * 154.30786 * 4 3 2
27 27 H 1.09001 * 117.49733 * 0.02562 * 5 3 2
28 28 H 1.08999 * 117.49862 * 214.98502 * 5 3 2
29 29 H 1.00899 * 110.99995 * 12.42370 * 8 6 5
30 30 H 1.09002 * 109.47401 * 59.99808 * 9 8 6
31 31 H 1.09001 * 109.46874 * 299.99821 * 9 8 6
32 32 H 1.09001 * 109.47194 * 299.99524 * 10 9 8
33 33 H 1.08992 * 109.47399 * 59.99697 * 10 9 8
34 34 H 0.97000 * 120.00354 * 180.02562 * 14 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 6 1.1853 2.4449 -0.7780
5 6 2.7420 1.9435 1.2637
6 6 3.5551 1.6561 0.0000
7 1 4.1884 0.7690 -0.0005
8 7 4.0776 2.8080 -0.7470
9 6 5.4686 2.5801 -1.1607
10 6 5.9770 3.7988 -1.9335
11 6 7.4039 3.5646 -2.3584
12 1 7.8986 2.6394 -2.1025
13 6 8.0775 4.5317 -3.0740
14 7 7.4749 5.6582 -3.3861
15 14 9.8464 4.2419 -3.6001
16 1 9.8655 3.5931 -4.9358
17 1 10.5611 5.5416 -3.6708
18 1 10.5186 3.3604 -2.6119
19 1 -0.3633 -1.0277 0.0005
20 1 -0.3633 0.5138 0.8901
21 1 -0.3634 0.5139 -0.8899
22 1 1.8933 -0.5138 -0.8900
23 1 1.8934 -0.5139 0.8899
24 1 1.4777 2.4339 -1.8280
25 1 0.1340 2.1708 -0.6906
26 1 1.3352 3.4443 -0.3695
27 1 2.8408 1.2454 2.0950
28 1 2.5948 2.9874 1.5409
29 1 3.9953 3.6565 -0.2073
30 1 5.5180 1.6980 -1.7991
31 1 6.0893 2.4251 -0.2782
32 1 5.3564 3.9542 -2.8160
33 1 5.9277 4.6805 -1.2948
34 1 7.9487 6.3384 -3.8898
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000397435781.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:57:16
Heat of formation + Delta-G solvation = -17.385913 kcal
Electronic energy + Delta-G solvation = -12319.746737 eV
Core-core repulsion = 10251.643431 eV
Total energy + Delta-G solvation = -2068.103305 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 197.148 amu
Computer time = 0.19 seconds
Orbital eigenvalues (eV)
-39.86421 -36.50860 -34.70510 -32.72021 -30.25716 -28.86019 -26.09485 -24.59187
-22.47818 -22.30560 -19.46266 -18.50245 -16.71994 -16.49930 -16.24063 -15.68107
-15.27713 -14.68669 -14.25321 -13.97045 -13.48526 -13.32533 -13.08118 -12.94227
-12.84882 -12.58428 -12.46620 -12.12725 -11.95853 -11.62849 -11.49938 -11.32317
-11.17045 -10.57241 -10.43588 -9.01112 -8.21308 -6.33239 1.40136 1.42038
1.53031 2.39933 2.83792 3.12145 3.25440 3.91004 3.96799 4.06558
4.21720 4.44861 4.51145 4.58306 4.65298 4.79627 4.86721 4.92446
5.02958 5.05466 5.06737 5.16954 5.24802 5.37867 5.43108 5.44237
5.63334 5.65377 5.78251 6.14329 6.29357 6.50770 6.83708 7.36229
8.91009
Molecular weight = 197.15amu
Principal moments of inertia in cm(-1)
A = 0.076912 B = 0.005726 C = 0.005619
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 363.963751 B = 4889.147538 C = 4981.822091
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.085 4.085
3 C -0.114 4.114
4 C -0.106 4.106
5 C -0.186 4.186
6 C 0.008 3.992
7 H 0.102 0.898
8 N -0.663 5.663
9 C 0.087 3.913
10 C 0.032 3.968
11 C -0.546 4.546
12 H 0.060 0.940
13 C 0.001 3.999
14 N -0.932 5.932
15 Si 0.969 3.031
16 H -0.272 1.272
17 H -0.281 1.281
18 H -0.263 1.263
19 H 0.063 0.937
20 H 0.058 0.942
21 H 0.058 0.942
22 H 0.058 0.942
23 H 0.069 0.931
24 H 0.044 0.956
25 H 0.076 0.924
26 H 0.045 0.955
27 H 0.107 0.893
28 H 0.092 0.908
29 H 0.337 0.663
30 H 0.056 0.944
31 H 0.020 0.980
32 H -0.007 1.007
33 H -0.009 1.009
34 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.212 -9.705 8.188 16.939
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.122 4.122
3 C -0.115 4.115
4 C -0.163 4.163
5 C -0.225 4.225
6 C -0.102 4.102
7 H 0.120 0.880
8 N -0.292 5.292
9 C -0.041 4.041
10 C -0.006 4.006
11 C -0.584 4.584
12 H 0.079 0.921
13 C -0.197 4.197
14 N -0.572 5.572
15 Si 0.793 3.207
16 H -0.197 1.197
17 H -0.206 1.206
18 H -0.187 1.187
19 H 0.082 0.918
20 H 0.077 0.923
21 H 0.077 0.923
22 H 0.077 0.923
23 H 0.088 0.912
24 H 0.063 0.937
25 H 0.095 0.905
26 H 0.064 0.936
27 H 0.125 0.875
28 H 0.111 0.889
29 H 0.156 0.844
30 H 0.075 0.925
31 H 0.038 0.962
32 H 0.012 0.988
33 H 0.010 0.990
34 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -11.433 -9.740 7.492 16.784
hybrid contribution 1.451 0.467 0.349 1.564
sum -9.982 -9.273 7.841 15.719
Atomic orbital electron populations
1.21793 0.94447 1.02020 1.02128 1.21064 0.96900 0.92410 1.01871
1.21895 0.93002 0.97156 0.99435 1.21240 0.99109 0.96897 0.99073
1.23737 1.04575 1.02362 0.91813 1.22662 0.94183 0.95441 0.97954
0.88039 1.60197 1.20508 1.04168 1.44299 1.21797 0.86435 0.98830
0.97067 1.18922 0.94621 0.92785 0.94255 1.21604 0.98832 1.02765
1.35230 0.92131 1.25989 1.03215 0.94689 0.95809 1.70108 1.39154
1.07877 1.40078 0.85396 0.78700 0.77721 0.78903 1.19716 1.20605
1.18679 0.91797 0.92293 0.92344 0.92315 0.91193 0.93724 0.90486
0.93560 0.87465 0.88919 0.84374 0.92504 0.96193 0.98825 0.99025
0.92692
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.43 8.92 71.98 0.64 -1.79 16
2 C -0.08 -1.72 6.12 30.59 0.19 -1.53 16
3 C -0.11 -2.82 2.47 -52.18 -0.13 -2.95 16
4 C -0.11 -2.71 8.95 71.98 0.64 -2.06 16
5 C -0.19 -4.46 9.52 30.59 0.29 -4.17 16
6 C 0.01 0.25 6.01 44.91 0.27 0.52 16
7 H 0.10 3.03 7.90 -2.39 -0.02 3.01 16
8 N -0.66 -24.69 6.15 -491.57 -3.02 -27.71 16
9 C 0.09 3.83 5.48 86.30 0.47 4.30 16
10 C 0.03 1.74 5.23 29.85 0.16 1.89 16
11 C -0.55 -31.82 9.11 25.60 0.23 -31.58 16
12 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16
13 C 0.00 0.06 5.46 84.66 0.46 0.52 16
14 N -0.93 -57.74 13.29 21.45 0.28 -57.45 16
15 Si 0.97 44.73 29.54 68.60 2.03 46.76 16
16 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16
17 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16
18 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16
19 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16
20 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16
21 H 0.06 0.99 6.45 -2.39 -0.02 0.98 16
22 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16
23 H 0.07 1.27 7.90 -2.39 -0.02 1.25 16
24 H 0.04 1.31 8.14 -2.39 -0.02 1.30 16
25 H 0.08 1.60 5.59 -2.39 -0.01 1.59 16
26 H 0.05 1.22 7.90 -2.39 -0.02 1.20 16
27 H 0.11 2.16 8.05 -2.39 -0.02 2.15 16
28 H 0.09 2.22 7.99 -2.39 -0.02 2.20 16
29 H 0.34 12.31 8.52 -89.69 -0.76 11.55 16
30 H 0.06 2.49 8.14 -2.39 -0.02 2.48 16
31 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16
32 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16
33 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16
34 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16
Total: -1.00 -63.75 279.03 2.80 -60.95
By element:
Atomic # 1 Polarization: 14.02 SS G_CDS: 0.28 Total: 14.31 kcal
Atomic # 6 Polarization: -40.08 SS G_CDS: 3.23 Total: -36.85 kcal
Atomic # 7 Polarization: -82.43 SS G_CDS: -2.74 Total: -85.17 kcal
Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal
Total: -63.75 2.80 -60.95 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000397435781.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 43.562 kcal
(2) G-P(sol) polarization free energy of solvation -63.749 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.188 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.802 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.948 kcal
(6) G-S(sol) free energy of system = (1) + (5) -17.386 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.19 seconds