Wall clock time and date at job start Mon Mar 30 2020 01:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47217 * 2 1 4 4 C 1.53002 * 115.55853 * 34.31220 * 3 2 1 5 5 C 1.52999 * 117.50080 * 248.62644 * 3 2 1 6 6 C 1.52999 * 117.50292 * 180.02562 * 3 2 1 7 7 H 1.08996 * 117.52238 * 214.97275 * 6 3 2 8 8 N 1.46908 * 117.49578 * 0.02562 * 6 3 2 9 9 C 1.46894 * 110.99837 * 205.01707 * 8 6 3 10 10 H 1.09002 * 109.47104 * 324.99694 * 9 8 6 11 11 C 1.52997 * 109.47515 * 84.99962 * 9 8 6 12 12 C 1.50708 * 109.46991 * 205.00145 * 9 8 6 13 13 H 1.08000 * 119.99723 * 359.97438 * 12 9 8 14 14 C 1.37873 * 119.99930 * 179.97438 * 12 9 8 15 15 N 1.31509 * 120.00195 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 119.99968 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.46959 * 89.99935 * 16 14 12 18 18 H 1.48491 * 109.47193 * 210.00326 * 16 14 12 19 19 H 1.48498 * 109.47096 * 330.00479 * 16 14 12 20 20 H 1.09001 * 109.47214 * 60.00081 * 1 2 3 21 21 H 1.09005 * 109.47326 * 180.02562 * 1 2 3 22 22 H 1.08993 * 109.47207 * 299.99709 * 1 2 3 23 23 H 1.09008 * 109.46947 * 239.99943 * 2 1 3 24 24 H 1.08993 * 109.47530 * 120.00485 * 2 1 3 25 25 H 1.08999 * 109.46922 * 205.68979 * 4 3 2 26 26 H 1.08999 * 109.47520 * 325.68887 * 4 3 2 27 27 H 1.09002 * 109.47254 * 85.69288 * 4 3 2 28 28 H 1.09000 * 117.50164 * 145.02136 * 5 3 2 29 29 H 1.08997 * 117.51532 * 359.97438 * 5 3 2 30 30 H 1.00898 * 110.99816 * 81.05788 * 8 6 3 31 31 H 1.09002 * 109.47153 * 59.99762 * 11 9 8 32 32 H 1.09001 * 109.46832 * 299.99953 * 11 9 8 33 33 H 1.09004 * 109.47261 * 179.97438 * 11 9 8 34 34 H 0.97006 * 120.00358 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1852 2.4449 0.7781 5 6 2.7418 1.9437 -1.2638 6 6 3.5550 1.6562 -0.0006 7 1 3.9433 2.5108 0.5534 8 7 4.4086 0.4606 -0.0017 9 6 5.7262 0.7540 0.5778 10 1 6.0205 1.7701 0.3150 11 6 5.6548 0.6212 2.1003 12 6 6.7413 -0.2191 0.0357 13 1 6.4379 -0.9796 -0.6685 14 6 8.0573 -0.1384 0.4387 15 7 8.4267 0.7874 1.2966 16 14 9.3155 -1.3450 -0.2326 17 1 9.9201 -0.7917 -1.4710 18 1 10.3781 -1.5671 0.7806 19 1 8.6483 -2.6352 -0.5413 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5137 0.8899 23 1 1.8933 -0.5139 -0.8901 24 1 1.8934 -0.5139 0.8899 25 1 1.3351 3.4442 0.3696 26 1 0.1338 2.1707 0.6909 27 1 1.4776 2.4339 1.8281 28 1 2.5946 2.9875 -1.5409 29 1 2.8407 1.2459 -2.0952 30 1 4.4991 0.0818 -0.9325 31 1 5.3604 -0.3949 2.3630 32 1 4.9206 1.3251 2.4923 33 1 6.6326 0.8385 2.5302 34 1 9.3526 0.8440 1.5805 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397481437.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:22 Heat of formation + Delta-G solvation = 7.683324 kcal Electronic energy + Delta-G solvation = -12811.696680 eV Core-core repulsion = 10744.680458 eV Total energy + Delta-G solvation = -2067.016222 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.43706 -34.86754 -32.35578 -31.01262 -28.30599 -26.71331 -25.13657 -23.46514 -21.21868 -19.77682 -18.10515 -16.40034 -15.13871 -14.75028 -14.35017 -13.98519 -13.51906 -12.93299 -12.80331 -12.43406 -11.81016 -11.66638 -11.49652 -11.25612 -10.97832 -10.81201 -10.75419 -10.55729 -10.39591 -10.15956 -10.05833 -9.68374 -9.10844 -8.76360 -8.43282 -7.09468 -6.02319 -4.08848 3.29574 3.36206 3.40156 4.28529 4.40471 4.97765 5.15632 5.28636 5.31926 5.41935 5.56571 5.80846 5.84034 5.86064 6.05055 6.12145 6.17726 6.21148 6.38132 6.48270 6.51912 6.65049 6.85594 6.91365 7.18561 7.26176 7.55060 7.79022 7.91316 8.27698 8.41727 8.67953 9.02079 9.57099 11.04037 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.056843 B = 0.007907 C = 0.007609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.465312 B = 3540.154188 C = 3679.097837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.071 4.071 3 C -0.128 4.128 4 C -0.117 4.117 5 C -0.209 4.209 6 C 0.051 3.949 7 H 0.098 0.902 8 N -0.654 5.654 9 C 0.213 3.787 10 H 0.002 0.998 11 C -0.123 4.123 12 C -0.519 4.519 13 H 0.059 0.941 14 C 0.062 3.938 15 N -0.890 5.890 16 Si 0.897 3.103 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.274 1.274 20 H 0.048 0.952 21 H 0.047 0.953 22 H 0.054 0.946 23 H 0.059 0.941 24 H 0.070 0.930 25 H 0.049 0.951 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.332 0.668 31 H 0.030 0.970 32 H 0.005 0.995 33 H 0.080 0.920 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.288 1.397 -2.186 11.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.109 4.109 3 C -0.130 4.130 4 C -0.174 4.174 5 C -0.248 4.248 6 C -0.061 4.061 7 H 0.116 0.884 8 N -0.283 5.283 9 C 0.106 3.894 10 H 0.020 0.980 11 C -0.182 4.182 12 C -0.558 4.558 13 H 0.077 0.923 14 C -0.140 4.140 15 N -0.529 5.529 16 Si 0.724 3.276 17 H -0.208 1.208 18 H -0.212 1.212 19 H -0.199 1.199 20 H 0.067 0.933 21 H 0.066 0.934 22 H 0.073 0.927 23 H 0.077 0.923 24 H 0.089 0.911 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.101 0.899 29 H 0.106 0.894 30 H 0.151 0.849 31 H 0.050 0.950 32 H 0.024 0.976 33 H 0.098 0.902 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.335 1.194 -1.485 11.494 hybrid contribution 1.160 -0.036 -1.082 1.587 sum -10.176 1.157 -2.567 10.558 Atomic orbital electron populations 1.21879 0.97031 1.00692 1.01233 1.20787 0.93726 0.93827 1.02528 1.21749 0.95360 0.96021 0.99879 1.21415 0.99215 0.97145 0.99603 1.23668 1.07774 1.00930 0.92450 1.22619 0.90618 0.94730 0.98164 0.88419 1.60406 1.16468 1.25449 1.25970 1.19145 0.82895 0.95200 0.92210 0.97995 1.21708 1.00571 0.97929 0.97952 1.21267 0.92764 1.15670 1.26088 0.92257 1.24911 0.98388 0.95672 0.94998 1.69899 1.17323 1.33434 1.32216 0.86523 0.80996 0.81475 0.78565 1.20762 1.21181 1.19855 0.93285 0.93413 0.92687 0.92259 0.91147 0.93220 0.91982 0.92554 0.89865 0.89354 0.84863 0.95042 0.97631 0.90173 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 8.92 37.16 0.33 -1.50 16 2 C -0.07 -1.07 5.58 -26.73 -0.15 -1.22 16 3 C -0.13 -2.01 2.47 -154.51 -0.38 -2.39 16 4 C -0.12 -1.56 9.49 37.16 0.35 -1.21 16 5 C -0.21 -3.30 9.52 -26.76 -0.25 -3.56 16 6 C 0.05 0.95 5.72 -67.73 -0.39 0.57 16 7 H 0.10 1.94 7.77 -51.93 -0.40 1.54 16 8 N -0.65 -14.20 5.95 -100.98 -0.60 -14.80 16 9 C 0.21 5.47 2.50 -68.87 -0.17 5.30 16 10 H 0.00 0.07 7.73 -51.93 -0.40 -0.34 16 11 C -0.12 -3.13 9.19 37.16 0.34 -2.79 16 12 C -0.52 -14.38 8.59 -34.44 -0.30 -14.68 16 13 H 0.06 1.62 7.62 -52.49 -0.40 1.22 16 14 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 15 N -0.89 -25.64 11.32 55.43 0.63 -25.02 16 16 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 20 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 21 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.05 0.63 6.45 -51.93 -0.33 0.29 16 23 H 0.06 0.91 7.90 -51.92 -0.41 0.50 16 24 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.05 0.62 7.90 -51.93 -0.41 0.21 16 26 H 0.06 0.73 5.59 -51.93 -0.29 0.44 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.08 1.20 8.05 -51.93 -0.42 0.79 16 29 H 0.09 1.37 7.99 -51.93 -0.42 0.96 16 30 H 0.33 7.10 8.01 -39.29 -0.31 6.79 16 31 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.00 0.11 8.07 -51.93 -0.42 -0.31 16 33 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 34 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 LS Contribution 273.57 15.07 4.12 4.12 Total: -1.00 -28.00 273.57 -7.36 -35.36 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -5.78 Total: 3.80 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: -0.71 Total: -19.84 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 0.03 Total: -39.82 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.00 -7.36 -35.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397481437.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.046 kcal (2) G-P(sol) polarization free energy of solvation -28.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds